Click here to switch to the map view.

The map label for this gene is 156978096

Identifier: 156978096

GI number: 156978096

Start: 1999314

End: 2000060

Strand: Reverse

Name: 156978096

Synonym: VIBHAR_06900

Alternate gene names: NA

Gene position: 2000060-1999314 (Counterclockwise)

Preceding gene: 156978098

Following gene: 156978095

Centisome position: 90.75

GC content: 49.26

Gene sequence:

>747_bases
ATGTCTGAAACGACACTTAAAAACACGTACTTGGCTCGTGAGCGCGCAACGCAATCACTGATTACTCCTCACACTTACTA
CGCGCAGTTGGCGCATCGCATTAACCACTCTCCTCAATTTGAACATGGACGCGTCAAAGACAAGATGCCAAACGTGCCAA
GCCCTCAGTCTTTTTGGCAAGTGTGCTGGGCCTACATGGGCGGACGTTCGCCGCTCAGTCCCGATAACCAGTTGCCTTAT
TCATCGATAGAGCCGACGCGGTTTGAGCAGCGACAACAAGCGATGCGAGTCACTTGGCTAGGGCATTCCACTTTGATGAT
TGAGACCGATGGCGTGCGCATTTTGACTGACCCTGTATTCGACTATGCGTCGCCTTTGATTGCTAAAGCATGGTTTGAGC
GCAATATCCCTAATACAGCCGTACGTGATAGCTTGCCGATTCCGGATGTCATCGTGATCTCTCATGATCATTACGATCAC
CTCGAAGCTTCGACCATACGTTACTATTCTGATAAATCCGTAACATTTTACGTGCCACTCGGTGTCGGTAAGCATTTGAT
TCGTTGGGGTGTTAGGCCTGATAACGTGGTGGAGTTTGATTGGTGGGAGAGCGTTCATTACGCCAACGTTGAGTTGATAT
GCACGCCAGCCAATCACAACTCTGGGCGCACTTATCTGGATAAGAATTCGACCTTATGGGCATCTTGGGTTGTTAAAGGG
CAGCAAGAGACAGGCTTTGTTGCGTAA

Upstream 100 bases:

>100_bases
GAAACCTAATCTTCATCTTACGCCCTATTTTGGTCATGAAAAAGACATACAAGCAGGCTTAACTAAAACCATAGTTTAGT
GAACAAGACGTAGATAGGAC

Downstream 100 bases:

>100_bases
TTCGATGGAACTAAATCAGGAAGTTGCGATCTGATCGGCTAAGTCAACTAATCTTTGTAGCCTTATGTCGAAACCTCGTT
ATAAAACAACTAACTGGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MSETTLKNTYLARERATQSLITPHTYYAQLAHRINHSPQFEHGRVKDKMPNVPSPQSFWQVCWAYMGGRSPLSPDNQLPY
SSIEPTRFEQRQQAMRVTWLGHSTLMIETDGVRILTDPVFDYASPLIAKAWFERNIPNTAVRDSLPIPDVIVISHDHYDH
LEASTIRYYSDKSVTFYVPLGVGKHLIRWGVRPDNVVEFDWWESVHYANVELICTPANHNSGRTYLDKNSTLWASWVVKG
QQETGFVA

Sequences:

>Translated_248_residues
MSETTLKNTYLARERATQSLITPHTYYAQLAHRINHSPQFEHGRVKDKMPNVPSPQSFWQVCWAYMGGRSPLSPDNQLPY
SSIEPTRFEQRQQAMRVTWLGHSTLMIETDGVRILTDPVFDYASPLIAKAWFERNIPNTAVRDSLPIPDVIVISHDHYDH
LEASTIRYYSDKSVTFYVPLGVGKHLIRWGVRPDNVVEFDWWESVHYANVELICTPANHNSGRTYLDKNSTLWASWVVKG
QQETGFVA
>Mature_247_residues
SETTLKNTYLARERATQSLITPHTYYAQLAHRINHSPQFEHGRVKDKMPNVPSPQSFWQVCWAYMGGRSPLSPDNQLPYS
SIEPTRFEQRQQAMRVTWLGHSTLMIETDGVRILTDPVFDYASPLIAKAWFERNIPNTAVRDSLPIPDVIVISHDHYDHL
EASTIRYYSDKSVTFYVPLGVGKHLIRWGVRPDNVVEFDWWESVHYANVELICTPANHNSGRTYLDKNSTLWASWVVKGQ
QETGFVA

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To K.pneumoniae romA [H]

Homologues:

Organism=Homo sapiens, GI170932483, Length=179, Percent_Identity=36.8715083798883, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI170932481, Length=179, Percent_Identity=36.8715083798883, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17543104, Length=189, Percent_Identity=31.7460317460317, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17543102, Length=178, Percent_Identity=32.0224719101124, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17543100, Length=178, Percent_Identity=32.0224719101124, Blast_Score=100, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI25148824, Length=178, Percent_Identity=32.0224719101124, Blast_Score=100, Evalue=8e-22,
Organism=Saccharomyces cerevisiae, GI6325154, Length=147, Percent_Identity=38.0952380952381, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28562; Mature: 28431

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSETTLKNTYLARERATQSLITPHTYYAQLAHRINHSPQFEHGRVKDKMPNVPSPQSFWQ
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCHHHHHH
VCWAYMGGRSPLSPDNQLPYSSIEPTRFEQRQQAMRVTWLGHSTLMIETDGVRILTDPVF
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEECCEEEEEEECCEEEEECCHH
DYASPLIAKAWFERNIPNTAVRDSLPIPDVIVISHDHYDHLEASTIRYYSDKSVTFYVPL
HHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCEEEEECCCCEEEEEEC
GVGKHLIRWGVRPDNVVEFDWWESVHYANVELICTPANHNSGRTYLDKNSTLWASWVVKG
CCCHHHHHCCCCCCCEEEECCCCCEEECCEEEEEECCCCCCCCEEECCCCEEEEEEEEEC
QQETGFVA
CCCCCCCC
>Mature Secondary Structure 
SETTLKNTYLARERATQSLITPHTYYAQLAHRINHSPQFEHGRVKDKMPNVPSPQSFWQ
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCHHHHHH
VCWAYMGGRSPLSPDNQLPYSSIEPTRFEQRQQAMRVTWLGHSTLMIETDGVRILTDPVF
HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEECCEEEEEEECCEEEEECCHH
DYASPLIAKAWFERNIPNTAVRDSLPIPDVIVISHDHYDHLEASTIRYYSDKSVTFYVPL
HHHHHHHHHHHHHCCCCCCHHHCCCCCCEEEEEECCCCCCCCCCEEEEECCCCEEEEEEC
GVGKHLIRWGVRPDNVVEFDWWESVHYANVELICTPANHNSGRTYLDKNSTLWASWVVKG
CCCHHHHHCCCCCCCEEEECCCCCEEECCEEEEEECCCCCCCCEEECCCCEEEEEEEEEC
QQETGFVA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]