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The map label for this gene is ykfC [H]

Identifier: 156978065

GI number: 156978065

Start: 1976010

End: 1977482

Strand: Direct

Name: ykfC [H]

Synonym: VIBHAR_06869

Alternate gene names: 156978065

Gene position: 1976010-1977482 (Clockwise)

Preceding gene: 156978064

Following gene: 156978066

Centisome position: 89.65

GC content: 45.62

Gene sequence:

>1473_bases
ATGATCTCTTCTCATGAAGTGAGTGCCCCTTCTGGCAGCGCCCAATGGCAATCCATCGACTGGAAAGCGGTTGAGCGCCA
TGTGTTAAGGCTCCAGATGCGCATTGCAAAAGCAATCCGAGAAGGTAAACACGGTAAGGCGAAAGCACTACAGTGGATAC
TGACTCACTCGAAAGCAGCAAAACTTCTCGCTGTTCGTCGAGTATCACAAAACAAAGGCAGTAAAACGCCAGGAATTGAC
GGTGACATCTGGAACACCGATGCACGTCGAATGGCGGCAGTCAGCTTACTGAGCAGAAAAGGCTATCGAGCCAAACCGCT
CAGAAGAATCTATATCCCGAAGAAAAACGGCAAACTTAGACCATTAAGTATCCCGTGCATGATAGACCGAGCGCAACAAG
CGTTACATCTTCTAGCACTAGAACCTATATCGGAAACAATTGCCGACCCTAACAGCTATGGCTTTAGACCTAACCGAAGC
GCAGCCGATGCAATACAGCAGTGCTTCAAATGCCTGTGCAAAAAGGGAGCAGCACAATGGGTTCTTGAGGGGGATATCAA
AGCTTGTTTCGACAAGATAGGTCACCAGTGGCTACTTGATAATGTCCCGACAGACAAAAGGATGCTCAAGCAATGGCTGG
AATGTGGCTATATAGACAAAGGGCTATTCTACAAAACGGCAGAGGGAACACCACAAGGCGGGATAATTTCACCCACCCTG
ATGTTGCTCACTCTTGTCGGACTAGAAAAGTTAATTAAGTCTATCGCTCGCAAGACAGGCAGCAGAGTAAACTTTATAGG
TTATGCTGACGACTTTGTTATCACGGGGTCTTCAAAGGAAGTCCTAGTGAATGACATTAAGCCGCAACTGATGGCTTTCT
TACAAGAAAGAGGTTTAGCGCTTTCTGAAGAGAAAACGCATGTGACTCATATTAATGATGGCTTCGACTTTCTTGGCTTT
AACGCCAGAAAGCATAAAGGAAAACTGCTCATTAAACCGAGTAAGTCCAACGTATTATCATTCTTACGAAACATGCGTGA
CCTCATTAGAAAACACGCAACAATCCCAGTAGCCGATCTCATCAAGATGATGAATCCAAAACTACGAGGATGGGCGAATT
ACTATCGCCATTGTGTTGCTAAACAAACCTTCGGCTATGTTGGACATCAGATGTTTCTAGCGTTATGGCGATGGTCAGTC
AGGCGTCACCCAAACAAGGGACGTAAATGGATCGCACACAAGTACTTTCTAAACTATCAAGGGCAATGGATTTTCCATGG
CTGGTTTAAAAAGGATGGACTGTATGGCGTGATCCGACTGTTTCAAATCGGTCAAGTGCCAATCAAACGACATGTAAAAA
TCATGAGCCAAGCGACCCCGTTCGATCCTTTTTGGGAAGGTTTTCTCAATGAACGTAAGGTGAAAAATACAGGTCGTAAC
TCATGGTTTGCTCCTGTCGCCACTGCTTTGTGA

Upstream 100 bases:

>100_bases
ATGCAGATACAGACGGATGTCTGACACGAAAGTGTGCCCACTTCCAACTGGTCTCCCATTGCAAGATGATTTGGAAAACT
TTATTTAAGAAGGAACGCAG

Downstream 100 bases:

>100_bases
GTTGCTGGGTAACAATAACGCCTTAGTGGAGGCTTGAGCCGTATGCAGTGAAAGTTGCACGTACGGTTCTTAGGAGGGCG
GCATCTGGTAACAGGTGTCG

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 490; Mature: 490

Protein sequence:

>490_residues
MISSHEVSAPSGSAQWQSIDWKAVERHVLRLQMRIAKAIREGKHGKAKALQWILTHSKAAKLLAVRRVSQNKGSKTPGID
GDIWNTDARRMAAVSLLSRKGYRAKPLRRIYIPKKNGKLRPLSIPCMIDRAQQALHLLALEPISETIADPNSYGFRPNRS
AADAIQQCFKCLCKKGAAQWVLEGDIKACFDKIGHQWLLDNVPTDKRMLKQWLECGYIDKGLFYKTAEGTPQGGIISPTL
MLLTLVGLEKLIKSIARKTGSRVNFIGYADDFVITGSSKEVLVNDIKPQLMAFLQERGLALSEEKTHVTHINDGFDFLGF
NARKHKGKLLIKPSKSNVLSFLRNMRDLIRKHATIPVADLIKMMNPKLRGWANYYRHCVAKQTFGYVGHQMFLALWRWSV
RRHPNKGRKWIAHKYFLNYQGQWIFHGWFKKDGLYGVIRLFQIGQVPIKRHVKIMSQATPFDPFWEGFLNERKVKNTGRN
SWFAPVATAL

Sequences:

>Translated_490_residues
MISSHEVSAPSGSAQWQSIDWKAVERHVLRLQMRIAKAIREGKHGKAKALQWILTHSKAAKLLAVRRVSQNKGSKTPGID
GDIWNTDARRMAAVSLLSRKGYRAKPLRRIYIPKKNGKLRPLSIPCMIDRAQQALHLLALEPISETIADPNSYGFRPNRS
AADAIQQCFKCLCKKGAAQWVLEGDIKACFDKIGHQWLLDNVPTDKRMLKQWLECGYIDKGLFYKTAEGTPQGGIISPTL
MLLTLVGLEKLIKSIARKTGSRVNFIGYADDFVITGSSKEVLVNDIKPQLMAFLQERGLALSEEKTHVTHINDGFDFLGF
NARKHKGKLLIKPSKSNVLSFLRNMRDLIRKHATIPVADLIKMMNPKLRGWANYYRHCVAKQTFGYVGHQMFLALWRWSV
RRHPNKGRKWIAHKYFLNYQGQWIFHGWFKKDGLYGVIRLFQIGQVPIKRHVKIMSQATPFDPFWEGFLNERKVKNTGRN
SWFAPVATAL
>Mature_490_residues
MISSHEVSAPSGSAQWQSIDWKAVERHVLRLQMRIAKAIREGKHGKAKALQWILTHSKAAKLLAVRRVSQNKGSKTPGID
GDIWNTDARRMAAVSLLSRKGYRAKPLRRIYIPKKNGKLRPLSIPCMIDRAQQALHLLALEPISETIADPNSYGFRPNRS
AADAIQQCFKCLCKKGAAQWVLEGDIKACFDKIGHQWLLDNVPTDKRMLKQWLECGYIDKGLFYKTAEGTPQGGIISPTL
MLLTLVGLEKLIKSIARKTGSRVNFIGYADDFVITGSSKEVLVNDIKPQLMAFLQERGLALSEEKTHVTHINDGFDFLGF
NARKHKGKLLIKPSKSNVLSFLRNMRDLIRKHATIPVADLIKMMNPKLRGWANYYRHCVAKQTFGYVGHQMFLALWRWSV
RRHPNKGRKWIAHKYFLNYQGQWIFHGWFKKDGLYGVIRLFQIGQVPIKRHVKIMSQATPFDPFWEGFLNERKVKNTGRN
SWFAPVATAL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=361, Percent_Identity=28.5318559556787, Blast_Score=107, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6226521, Length=329, Percent_Identity=26.1398176291793, Blast_Score=99, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 55905; Mature: 55905

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSHEVSAPSGSAQWQSIDWKAVERHVLRLQMRIAKAIREGKHGKAKALQWILTHSKAA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
KLLAVRRVSQNKGSKTPGIDGDIWNTDARRMAAVSLLSRKGYRAKPLRRIYIPKKNGKLR
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
PLSIPCMIDRAQQALHLLALEPISETIADPNSYGFRPNRSAADAIQQCFKCLCKKGAAQW
EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
VLEGDIKACFDKIGHQWLLDNVPTDKRMLKQWLECGYIDKGLFYKTAEGTPQGGIISPTL
EEECCHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHH
MLLTLVGLEKLIKSIARKTGSRVNFIGYADDFVITGSSKEVLVNDIKPQLMAFLQERGLA
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCHHHHCCHHHHHHHHHCCCC
LSEEKTHVTHINDGFDFLGFNARKHKGKLLIKPSKSNVLSFLRNMRDLIRKHATIPVADL
CCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHH
IKMMNPKLRGWANYYRHCVAKQTFGYVGHQMFLALWRWSVRRHPNKGRKWIAHKYFLNYQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEECCC
GQWIFHGWFKKDGLYGVIRLFQIGQVPIKRHVKIMSQATPFDPFWEGFLNERKVKNTGRN
CCEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHCCHHHHCCCCC
SWFAPVATAL
CCCCHHHHCC
>Mature Secondary Structure
MISSHEVSAPSGSAQWQSIDWKAVERHVLRLQMRIAKAIREGKHGKAKALQWILTHSKAA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
KLLAVRRVSQNKGSKTPGIDGDIWNTDARRMAAVSLLSRKGYRAKPLRRIYIPKKNGKLR
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
PLSIPCMIDRAQQALHLLALEPISETIADPNSYGFRPNRSAADAIQQCFKCLCKKGAAQW
EEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCE
VLEGDIKACFDKIGHQWLLDNVPTDKRMLKQWLECGYIDKGLFYKTAEGTPQGGIISPTL
EEECCHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHH
MLLTLVGLEKLIKSIARKTGSRVNFIGYADDFVITGSSKEVLVNDIKPQLMAFLQERGLA
HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCHHHHCCHHHHHHHHHCCCC
LSEEKTHVTHINDGFDFLGFNARKHKGKLLIKPSKSNVLSFLRNMRDLIRKHATIPVADL
CCCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHH
IKMMNPKLRGWANYYRHCVAKQTFGYVGHQMFLALWRWSVRRHPNKGRKWIAHKYFLNYQ
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEECCC
GQWIFHGWFKKDGLYGVIRLFQIGQVPIKRHVKIMSQATPFDPFWEGFLNERKVKNTGRN
CCEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHCCHHHHCCCCC
SWFAPVATAL
CCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]