BacMap

Definition	Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence.
Accession	NC_009784
Length	2,204,018

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The map label for this gene is ygfF [H]

Identifier: 156978045

GI number: 156978045

Start: 1960977

End: 1961708

Strand: Direct

Name: ygfF [H]

Synonym: VIBHAR_06849

Alternate gene names: 156978045

Gene position: 1960977-1961708 (Clockwise)

Preceding gene: 156978044

Following gene: 156978046

Centisome position: 88.97

GC content: 47.95

Gene sequence:

>732_bases
TTGCAGAAAGTAGTCATCATCACAGGCGCAAGCCGAGGCATCGGAGCCGCAACCGCCAAATTACTCGCCAAGCAAGGCTA
TGCCGTATGCGTTAACTATCGCACTCAAGCCGATGCTGCCGCGCAAGTTGTTGGTGAAATTGAGAAAAGTGACGGTAAAG
CCATCGCCATCAAAGCGGATGTTTCCGATGAGCAGCAGGTACTCTCATTGTTTGAAAAAACTGAACAAGTACTCGGAAAA
GTCACTCACCTCGTCAACAACGTGGGCATCTTATTCACTCAATCTCGTCTTGCGGACATGAGCCTTGAGCGATTCCAAAC
TGTGATGAATGCTAATGTGACGAGCTGTTTTCTTTGTTGTAGAGAAGCAGCAAAACGATTTGAATCTGACAATGCGATTG
TTAATGTTTCTTCTGCCGCATCCCGCTCTGGTGCGCCATTTGAATACGTTGATTACGCTGCCTCTAAAGGCGCAATGGAC
TCACTAACCAAAGGGTTATCTTTGGAATTAGCTGAGCAAAACATCCGTGTAAACGGTGTTCGGCCCGGCTGTATTTACAC
CGATATTCATGCCGATGGCGGCGAGCCGAATCGAGTCGACAGGCTCAGTGAAAAAATCCCTCTCAAACGAGGTGGCACGG
TAGATGAAGTGGCCAATGCCATCGCGTGGTTACTGAGTGATGAAGCTTCTTATGTCACTGGATCGTTTATCGATCTTGCA
GGCGGAAATTAA

Upstream 100 bases:

>100_bases
CGAGACCATCCCCGAAGCCTATGAAATAGGTGGGAAAAAGTACGCAGATAAGCTCTATTCATTACAAAAATAATATTCAC
GACAAAAATAAGGACGTGTT

Downstream 100 bases:

>100_bases
GGAGTAACAATGAAAATCAGACCAGCGACACCCGACGATCTCAACGCACTTTTTGATTTAAACAAACAGATCAACGAGCT
TCACCACCTTTATGCACCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MQKVVIITGASRGIGAATAKLLAKQGYAVCVNYRTQADAAAQVVGEIEKSDGKAIAIKADVSDEQQVLSLFEKTEQVLGK
VTHLVNNVGILFTQSRLADMSLERFQTVMNANVTSCFLCCREAAKRFESDNAIVNVSSAASRSGAPFEYVDYAASKGAMD
SLTKGLSLELAEQNIRVNGVRPGCIYTDIHADGGEPNRVDRLSEKIPLKRGGTVDEVANAIAWLLSDEASYVTGSFIDLA
GGN

Sequences:

>Translated_243_residues
MQKVVIITGASRGIGAATAKLLAKQGYAVCVNYRTQADAAAQVVGEIEKSDGKAIAIKADVSDEQQVLSLFEKTEQVLGK
VTHLVNNVGILFTQSRLADMSLERFQTVMNANVTSCFLCCREAAKRFESDNAIVNVSSAASRSGAPFEYVDYAASKGAMD
SLTKGLSLELAEQNIRVNGVRPGCIYTDIHADGGEPNRVDRLSEKIPLKRGGTVDEVANAIAWLLSDEASYVTGSFIDLA
GGN
>Mature_243_residues
MQKVVIITGASRGIGAATAKLLAKQGYAVCVNYRTQADAAAQVVGEIEKSDGKAIAIKADVSDEQQVLSLFEKTEQVLGK
VTHLVNNVGILFTQSRLADMSLERFQTVMNANVTSCFLCCREAAKRFESDNAIVNVSSAASRSGAPFEYVDYAASKGAMD
SLTKGLSLELAEQNIRVNGVRPGCIYTDIHADGGEPNRVDRLSEKIPLKRGGTVDEVANAIAWLLSDEASYVTGSFIDLA
GGN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=250, Percent_Identity=36, Blast_Score=124, Evalue=5e-29,
Organism=Homo sapiens, GI19923817, Length=250, Percent_Identity=31.2, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=33.469387755102, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=29.3172690763052, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=29.3172690763052, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=29.1497975708502, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI109715829, Length=256, Percent_Identity=28.515625, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=31.7073170731707, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI59889578, Length=202, Percent_Identity=28.7128712871287, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI40254986, Length=196, Percent_Identity=30.6122448979592, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI4503301, Length=251, Percent_Identity=27.8884462151394, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI66933014, Length=249, Percent_Identity=28.9156626506024, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=59.0163934426229, Blast_Score=289, Evalue=1e-79,
Organism=Escherichia coli, GI1789378, Length=240, Percent_Identity=32.0833333333333, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=31.7073170731707, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787905, Length=242, Percent_Identity=34.7107438016529, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787335, Length=242, Percent_Identity=32.2314049586777, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=30.5019305019305, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=30.2040816326531, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI2367365, Length=235, Percent_Identity=31.063829787234, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=29.5546558704453, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=27.1255060728745, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=28.6852589641434, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=30.46875, Blast_Score=75, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=36.2139917695473, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=35.3658536585366, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=34.2629482071713, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=34.2629482071713, Blast_Score=113, Evalue=8e-26,
Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=33.6065573770492, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=32.1285140562249, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17562906, Length=257, Percent_Identity=31.5175097276265, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=256, Percent_Identity=32.421875, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI17538480, Length=256, Percent_Identity=32.03125, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=31.9838056680162, Blast_Score=97, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=32.5490196078431, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI193204405, Length=257, Percent_Identity=31.1284046692607, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=30.4, Blast_Score=94, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=29.5719844357977, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17531453, Length=257, Percent_Identity=30.7392996108949, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=255, Percent_Identity=28.6274509803922, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562908, Length=257, Percent_Identity=31.1284046692607, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=255, Percent_Identity=30.5882352941176, Blast_Score=87, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=253, Percent_Identity=30.8300395256917, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=255, Percent_Identity=30.5882352941176, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI72000259, Length=255, Percent_Identity=29.8039215686275, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=202, Percent_Identity=34.1584158415842, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17551412, Length=257, Percent_Identity=28.4046692607004, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=256, Percent_Identity=29.6875, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17565030, Length=260, Percent_Identity=29.2307692307692, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=27.0992366412214, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17561272, Length=240, Percent_Identity=27.0833333333333, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=28.3524904214559, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17555612, Length=208, Percent_Identity=29.3269230769231, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=253, Percent_Identity=26.4822134387352, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=191, Percent_Identity=30.3664921465969, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=179, Percent_Identity=29.608938547486, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=249, Percent_Identity=28.1124497991968, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=240, Percent_Identity=27.9166666666667, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6322861, Length=190, Percent_Identity=32.1052631578947, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322067, Length=193, Percent_Identity=30.0518134715026, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=37.2, Blast_Score=129, Evalue=2e-30,
Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=38.6178861788618, Blast_Score=125, Evalue=2e-29,
Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=37.7510040160643, Blast_Score=124, Evalue=7e-29,
Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=37.246963562753, Blast_Score=122, Evalue=3e-28,
Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=35.8024691358025, Blast_Score=110, Evalue=7e-25,
Organism=Drosophila melanogaster, GI21355319, Length=244, Percent_Identity=32.7868852459016, Blast_Score=104, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24639444, Length=247, Percent_Identity=33.1983805668016, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24644337, Length=248, Percent_Identity=34.6774193548387, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI21357673, Length=245, Percent_Identity=28.1632653061224, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24584744, Length=190, Percent_Identity=33.1578947368421, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28574402, Length=192, Percent_Identity=32.2916666666667, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24641232, Length=202, Percent_Identity=30.1980198019802, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI161076933, Length=189, Percent_Identity=31.7460317460317, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24584748, Length=189, Percent_Identity=31.7460317460317, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28571387, Length=235, Percent_Identity=29.7872340425532, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI17737361, Length=253, Percent_Identity=28.4584980237154, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007236, Length=239, Percent_Identity=27.6150627615063, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI281364494, Length=200, Percent_Identity=28.5, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24663911, Length=232, Percent_Identity=28.0172413793103, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648693, Length=208, Percent_Identity=28.3653846153846, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355889, Length=208, Percent_Identity=28.3653846153846, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI18859837, Length=190, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25883; Mature: 25883

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS00061 ADH_SHORT ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKVVIITGASRGIGAATAKLLAKQGYAVCVNYRTQADAAAQVVGEIEKSDGKAIAIKAD
CCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEC
VSDEQQVLSLFEKTEQVLGKVTHLVNNVGILFTQSRLADMSLERFQTVMNANVTSCFLCC
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHH
REAAKRFESDNAIVNVSSAASRSGAPFEYVDYAASKGAMDSLTKGLSLELAEQNIRVNGV
HHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHCCCEEEEECCCEEECCC
RPGCIYTDIHADGGEPNRVDRLSEKIPLKRGGTVDEVANAIAWLLSDEASYVTGSFIDLA
CCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEECCCEEEEC
GGN
CCC
>Mature Secondary Structure
MQKVVIITGASRGIGAATAKLLAKQGYAVCVNYRTQADAAAQVVGEIEKSDGKAIAIKAD
CCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEC
VSDEQQVLSLFEKTEQVLGKVTHLVNNVGILFTQSRLADMSLERFQTVMNANVTSCFLCC
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHH
REAAKRFESDNAIVNVSSAASRSGAPFEYVDYAASKGAMDSLTKGLSLELAEQNIRVNGV
HHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHCCCEEEEECCCEEECCC
RPGCIYTDIHADGGEPNRVDRLSEKIPLKRGGTVDEVANAIAWLLSDEASYVTGSFIDLA
CCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEECCCEEEEC
GGN
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 7764507 [H]