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The map label for this gene is torY [H]

Identifier: 156978043

GI number: 156978043

Start: 1959072

End: 1960166

Strand: Reverse

Name: torY [H]

Synonym: VIBHAR_06847

Alternate gene names: 156978043

Gene position: 1960166-1959072 (Counterclockwise)

Preceding gene: 156978049

Following gene: 156978042

Centisome position: 88.94

GC content: 47.67

Gene sequence:

>1095_bases
ATGTTGATTAAAAAACGTTATATCGCCGCAATGGTGGCAGTGGGTATTGGTGTGGGCTGGCTAACTTTAGGTGGCACCGC
AGCAGTGATGCATTACACATCCGACACTGGGTTCTGTCTCTCTTGTCACTCTATGGAAATCCCTTACAAAGAGTATCAAG
GCTCAGTGCACTTTAGTAACGCTAAAGGTATTCGCGCAGAATGTTCGGACTGCCACATTCCGAAAGAGCCAATGGATTAC
TTGGTCACTAAGATCCGCGCTTCAAAAGACATCTACCATGAGTTTGTAACAGGTAAGATCGACACGCCAGAGAAGTACGA
AGCACACCGTACTGAACTTGCAGAGATGGTTTGGGAGCAGTTCCGTGAAAACGATTCGGCAACCTGTCGTTCTTGTCACG
ACTTCGATGCAATGGAAGAGTTCGAGCAATCACGTGATGCGGCGAAGATGCACGCATACGGCAAAGCGAATGACCAAACG
TGTATCGACTGTCACAAAGGCGTAGCGCACTTCGCTCCAGAAGCGGAACTTGATAGCAAAGCGTTTGAAACACTGATGAG
CTTTACAACCAAGACAGCAGCAGACGCGAAAGTGGTTTACCCAGTGACGTCAATCAACATGGGTGACTTTGGTACGGTGA
ATCCAACAACCAAACTGAACGTTGTAAAAGCGGACGGTGACAACCGCACCGTTAAGATCAATGCATTCCAAATGAAAGGT
GCTGAGCAAGTGCTTTACATGGGTGAAGGTCAACGCGCGATTGTTGCAACACTATCTGAACAAGGCCAACAAGCAGTTGA
AGCTGGCGAGTTCAAAGCAGACGTATACGGCAACGAGTGGCGCCCTGTTTCTCTAACGGCAACGATCGATTCTCCAGTGG
TTGATATGCTAGAGCCGGTTTGGTCATATGCAGAAGAGTTGGACAACGTTTACTGTGCAACTTGTCACGCGAAAATTCCT
TCAAATCACTTCACGGTGAACGCATGGGGTCCTGTAGCGAAGAGTATGGGTGATCGCACTGATATTTCAGCAGAAAACCT
AGAAATTTTGACTAAGTTCTTCCAGCACCAGGCGAAAGATGTGGTTGGTCACTAA

Upstream 100 bases:

>100_bases
CCACCTAGGGTGTACGTATGACTCAGATCAATTACCAGATACTACTAAAGAGGTAAATATGCGACAAAGTATGTGAATTT
GTGAGTATTTATTTCTAATT

Downstream 100 bases:

>100_bases
TAGAGAAATAGAAGGATAAGATTATGACTAATTTAACTCGTCGCGGATTTCTAAAAGGCACTGGTCTTACTGCTGGTGCA
CTCGCATTCACTTCAATGAC

Product: cytochrome c protein, subunit of nitrate reductase

Products: H2O; trimethylamine; NAD [C]

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MLIKKRYIAAMVAVGIGVGWLTLGGTAAVMHYTSDTGFCLSCHSMEIPYKEYQGSVHFSNAKGIRAECSDCHIPKEPMDY
LVTKIRASKDIYHEFVTGKIDTPEKYEAHRTELAEMVWEQFRENDSATCRSCHDFDAMEEFEQSRDAAKMHAYGKANDQT
CIDCHKGVAHFAPEAELDSKAFETLMSFTTKTAADAKVVYPVTSINMGDFGTVNPTTKLNVVKADGDNRTVKINAFQMKG
AEQVLYMGEGQRAIVATLSEQGQQAVEAGEFKADVYGNEWRPVSLTATIDSPVVDMLEPVWSYAEELDNVYCATCHAKIP
SNHFTVNAWGPVAKSMGDRTDISAENLEILTKFFQHQAKDVVGH

Sequences:

>Translated_364_residues
MLIKKRYIAAMVAVGIGVGWLTLGGTAAVMHYTSDTGFCLSCHSMEIPYKEYQGSVHFSNAKGIRAECSDCHIPKEPMDY
LVTKIRASKDIYHEFVTGKIDTPEKYEAHRTELAEMVWEQFRENDSATCRSCHDFDAMEEFEQSRDAAKMHAYGKANDQT
CIDCHKGVAHFAPEAELDSKAFETLMSFTTKTAADAKVVYPVTSINMGDFGTVNPTTKLNVVKADGDNRTVKINAFQMKG
AEQVLYMGEGQRAIVATLSEQGQQAVEAGEFKADVYGNEWRPVSLTATIDSPVVDMLEPVWSYAEELDNVYCATCHAKIP
SNHFTVNAWGPVAKSMGDRTDISAENLEILTKFFQHQAKDVVGH
>Mature_364_residues
MLIKKRYIAAMVAVGIGVGWLTLGGTAAVMHYTSDTGFCLSCHSMEIPYKEYQGSVHFSNAKGIRAECSDCHIPKEPMDY
LVTKIRASKDIYHEFVTGKIDTPEKYEAHRTELAEMVWEQFRENDSATCRSCHDFDAMEEFEQSRDAAKMHAYGKANDQT
CIDCHKGVAHFAPEAELDSKAFETLMSFTTKTAADAKVVYPVTSINMGDFGTVNPTTKLNVVKADGDNRTVKINAFQMKG
AEQVLYMGEGQRAIVATLSEQGQQAVEAGEFKADVYGNEWRPVSLTATIDSPVVDMLEPVWSYAEELDNVYCATCHAKIP
SNHFTVNAWGPVAKSMGDRTDISAENLEILTKFFQHQAKDVVGH

Specific function: Part of the anaerobic respiratory chain of trimethylamine-N-oxide reductase TorZ. Required for electron transfer to the TorZ terminal enzyme [H]

COG id: COG3005

COG function: function code C; Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TorC/TorY family [H]

Homologues:

Organism=Escherichia coli, GI1788181, Length=335, Percent_Identity=53.7313432835821, Blast_Score=400, Evalue=1e-113,
Organism=Escherichia coli, GI1787230, Length=365, Percent_Identity=37.5342465753425, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI1788530, Length=168, Percent_Identity=41.6666666666667, Blast_Score=152, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009154
- InterPro:   IPR011031
- InterPro:   IPR005126 [H]

Pfam domain/function: PF03264 Cytochrom_NNT [H]

EC number: NA

Molecular weight: Translated: 40373; Mature: 40373

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKKRYIAAMVAVGIGVGWLTLGGTAAVMHYTSDTGFCLSCHSMEIPYKEYQGSVHFSN
CCCHHHHHHHHHHHHHCHHHEEECCCEEEEEEECCCCEEEEECCCCCCHHHHCCCEEECC
AKGIRAECSDCHIPKEPMDYLVTKIRASKDIYHEFVTGKIDTPEKYEAHRTELAEMVWEQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
FRENDSATCRSCHDFDAMEEFEQSRDAAKMHAYGKANDQTCIDCHKGVAHFAPEAELDSK
HHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHCCCCCCCCHH
AFETLMSFTTKTAADAKVVYPVTSINMGDFGTVNPTTKLNVVKADGDNRTVKINAFQMKG
HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECC
AEQVLYMGEGQRAIVATLSEQGQQAVEAGEFKADVYGNEWRPVSLTATIDSPVVDMLEPV
CCEEEEECCCCEEEEHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCHHHHHHHHH
WSYAEELDNVYCATCHAKIPSNHFTVNAWGPVAKSMGDRTDISAENLEILTKFFQHQAKD
HHHHHHHCCEEEEEEECCCCCCCEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VVGH
HCCC
>Mature Secondary Structure
MLIKKRYIAAMVAVGIGVGWLTLGGTAAVMHYTSDTGFCLSCHSMEIPYKEYQGSVHFSN
CCCHHHHHHHHHHHHHCHHHEEECCCEEEEEEECCCCEEEEECCCCCCHHHHCCCEEECC
AKGIRAECSDCHIPKEPMDYLVTKIRASKDIYHEFVTGKIDTPEKYEAHRTELAEMVWEQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
FRENDSATCRSCHDFDAMEEFEQSRDAAKMHAYGKANDQTCIDCHKGVAHFAPEAELDSK
HHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHCCCCCCCCHH
AFETLMSFTTKTAADAKVVYPVTSINMGDFGTVNPTTKLNVVKADGDNRTVKINAFQMKG
HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECC
AEQVLYMGEGQRAIVATLSEQGQQAVEAGEFKADVYGNEWRPVSLTATIDSPVVDMLEPV
CCEEEEECCCCEEEEHHHHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCHHHHHHHHH
WSYAEELDNVYCATCHAKIPSNHFTVNAWGPVAKSMGDRTDISAENLEILTKFFQHQAKD
HHHHHHHCCEEEEEEECCCCCCCEEEEECCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
VVGH
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: trimethylamine-N-oxide; NADH [C]

Specific reaction: trimethylamine-N-oxide + NADH = H2O + trimethylamine + NAD [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]