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The map label for this gene is intR [H]

Identifier: 156978022

GI number: 156978022

Start: 1934303

End: 1935328

Strand: Reverse

Name: intR [H]

Synonym: VIBHAR_06819

Alternate gene names: 156978022

Gene position: 1935328-1934303 (Counterclockwise)

Preceding gene: 156978024

Following gene: 156978021

Centisome position: 87.81

GC content: 43.76

Gene sequence:

>1026_bases
TTGCAAATCACAACAAGAGCAGCCAAAGCTGCCAAGGAAATCGATATGAGTAACAGTCAGATTACTGTAACCCAGTACAT
TAAAAAGTTCTTACACAGCCGGAAGTTTGCGGTTAAACCTTCCACATTCATCTCCGAAAAATGCAAAGCTAATAAGCTTA
CTCGCTATTTCGGTTCGACGCCCATAGACGCTGTGCGTCATAGTGACATCATCGAAATGCTGGACGAGTTGCATGAGCGC
TATTCGAACAAGAGCATCAACGAATTTCTTACTATTCTAAGAGCAGTGTTTCTGCGTGCTGAGCGTGATGGTGTCGTTGA
TAGAAACCCAATGAACGGCATCAAAAATCTTAAAGCCATTAAGCCTATTCCAAATCCATTTACTAAAAAAGAGCTCAGTC
AACTCCATCAAACGCTGGGTTGTGAGCAGGGAAAAAATGCTGTTGAGCTCGATGTATACACGGGATTACGTATTAGTGAA
TTACTTGCTCTAAGTTGGGAGGATATTGATTGGGAAAATCGAGTTTTGTTGGTTCGTCGTGCCAAGGTACTTCAAAGCTA
TAAAACGACGAAGACGAAAGAATCAACACGTAAAGTCGAGCTGAATGAGTTAGCGATACAAGCTCTTAAAAGGCAGTGGG
CACTGACTGGTCAGCTCGAAGCGGTTAAGATATCAGTCTTGCAAGATGACAATAAATCTTACATAGAGGAACGCGTCCAC
ATTGTTTTTTACAACAGCCAGACTAACCAACCATTCCTTCACGCAGCTCAATTCAACAATACGTTCTTTCGTGCCTTCTT
GGAAAAGGCTGGGGTTGCTCATCGTGGCGTAGGGCAATTGCGTCATACCTTTGCCAGTCAAAACCTCACTGCTGGCATCG
CGAAAGATTGGATTGCGATGCAAATGGGGCACGCTGATACAAGCATGATTGATGACCACTATGGTCAGTGGATACCCGCA
GACTCCCCCAACTATTCGGCTTTGTTGCTTAAATCGATGGAACTAAATCAAGAAGCTACGATCTGA

Upstream 100 bases:

>100_bases
CTTGATCTTATTCTTCGCGCTAGGCGATTAGAATGCGGGTTTTATGGAGCGCTTACAGCATTTTCATATTTGATTTCCAT
TTTTTCGAGCGATATTCTGC

Downstream 100 bases:

>100_bases
TCGGCTACACCCATCAATCGTCGTAACCTCATGCCTAAACCTCGTTACAAAACAACTAACTGGAAGCAGTACAATAAAGC
CTTAATCAACCGTGGTTCTT

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MQITTRAAKAAKEIDMSNSQITVTQYIKKFLHSRKFAVKPSTFISEKCKANKLTRYFGSTPIDAVRHSDIIEMLDELHER
YSNKSINEFLTILRAVFLRAERDGVVDRNPMNGIKNLKAIKPIPNPFTKKELSQLHQTLGCEQGKNAVELDVYTGLRISE
LLALSWEDIDWENRVLLVRRAKVLQSYKTTKTKESTRKVELNELAIQALKRQWALTGQLEAVKISVLQDDNKSYIEERVH
IVFYNSQTNQPFLHAAQFNNTFFRAFLEKAGVAHRGVGQLRHTFASQNLTAGIAKDWIAMQMGHADTSMIDDHYGQWIPA
DSPNYSALLLKSMELNQEATI

Sequences:

>Translated_341_residues
MQITTRAAKAAKEIDMSNSQITVTQYIKKFLHSRKFAVKPSTFISEKCKANKLTRYFGSTPIDAVRHSDIIEMLDELHER
YSNKSINEFLTILRAVFLRAERDGVVDRNPMNGIKNLKAIKPIPNPFTKKELSQLHQTLGCEQGKNAVELDVYTGLRISE
LLALSWEDIDWENRVLLVRRAKVLQSYKTTKTKESTRKVELNELAIQALKRQWALTGQLEAVKISVLQDDNKSYIEERVH
IVFYNSQTNQPFLHAAQFNNTFFRAFLEKAGVAHRGVGQLRHTFASQNLTAGIAKDWIAMQMGHADTSMIDDHYGQWIPA
DSPNYSALLLKSMELNQEATI
>Mature_341_residues
MQITTRAAKAAKEIDMSNSQITVTQYIKKFLHSRKFAVKPSTFISEKCKANKLTRYFGSTPIDAVRHSDIIEMLDELHER
YSNKSINEFLTILRAVFLRAERDGVVDRNPMNGIKNLKAIKPIPNPFTKKELSQLHQTLGCEQGKNAVELDVYTGLRISE
LLALSWEDIDWENRVLLVRRAKVLQSYKTTKTKESTRKVELNELAIQALKRQWALTGQLEAVKISVLQDDNKSYIEERVH
IVFYNSQTNQPFLHAAQFNNTFFRAFLEKAGVAHRGVGQLRHTFASQNLTAGIAKDWIAMQMGHADTSMIDDHYGQWIPA
DSPNYSALLLKSMELNQEATI

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=280, Percent_Identity=31.7857142857143, Blast_Score=134, Evalue=9e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38941; Mature: 38941

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQITTRAAKAAKEIDMSNSQITVTQYIKKFLHSRKFAVKPSTFISEKCKANKLTRYFGST
CCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PIDAVRHSDIIEMLDELHERYSNKSINEFLTILRAVFLRAERDGVVDRNPMNGIKNLKAI
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
KPIPNPFTKKELSQLHQTLGCEQGKNAVELDVYTGLRISELLALSWEDIDWENRVLLVRR
CCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCEEHHHH
AKVLQSYKTTKTKESTRKVELNELAIQALKRQWALTGQLEAVKISVLQDDNKSYIEERVH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHCCEE
IVFYNSQTNQPFLHAAQFNNTFFRAFLEKAGVAHRGVGQLRHTFASQNLTAGIAKDWIAM
EEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
QMGHADTSMIDDHYGQWIPADSPNYSALLLKSMELNQEATI
HCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHCCCCCCC
>Mature Secondary Structure
MQITTRAAKAAKEIDMSNSQITVTQYIKKFLHSRKFAVKPSTFISEKCKANKLTRYFGST
CCCCHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PIDAVRHSDIIEMLDELHERYSNKSINEFLTILRAVFLRAERDGVVDRNPMNGIKNLKAI
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHC
KPIPNPFTKKELSQLHQTLGCEQGKNAVELDVYTGLRISELLALSWEDIDWENRVLLVRR
CCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCEEHHHH
AKVLQSYKTTKTKESTRKVELNELAIQALKRQWALTGQLEAVKISVLQDDNKSYIEERVH
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHCCEE
IVFYNSQTNQPFLHAAQFNNTFFRAFLEKAGVAHRGVGQLRHTFASQNLTAGIAKDWIAM
EEEEECCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
QMGHADTSMIDDHYGQWIPADSPNYSALLLKSMELNQEATI
HCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]