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The map label for this gene is ykfC [H]

Identifier: 156978002

GI number: 156978002

Start: 1918829

End: 1920298

Strand: Direct

Name: ykfC [H]

Synonym: VIBHAR_06798

Alternate gene names: 156978002

Gene position: 1918829-1920298 (Clockwise)

Preceding gene: 156978001

Following gene: 156978003

Centisome position: 87.06

GC content: 44.83

Gene sequence:

>1470_bases
ATGATTTCAAAAGAGATTAGTGCCTCTCCTGACAGTGCTCAGTGGTCATCCATAAATTGGAAAGCCGTTGAATCCCATGT
TTTAAAGCTTCAGATGCGTATTGCAAAGGCAACACGAGAAGGTAAACACGGCAAAGCGAAAGCATTGCAGTGGATACTGA
CTCACTCGCGCTCAGCAAAACTTCTTGCTGTTAAGCGGGTATCACAAAATAAAGGCAGTAAAACGCCTGGAATTGACGGC
GTTATCTGGAATACAGATACGCGCCGCATGAAAGCAGTCAATCAATTGAGCAGAAAAGCTTATCTAGCCAAACCGCTCAA
GCGTATCTACATCCCCAAGAAAAACGGCAAACTCAGACCACTGGGTATCCCCTGTATGGTCGATAGAGCGCAGCAAGCGC
TTCATCTTCTTGCACTAGAGCCAGTATCAGAAACACTTGCCGATCCTAACAGCTATGGATTTAGACCAAATCGAAGCACT
GCTGATGCTATCGCGCAGTGCTTCAAGTGTCTGGCACTAAAGAAATCAGCTCAGTGGGTACTTGAGGGAGACATCAAAGC
CTGTTTCGACAAGATTGGGCATCAATGGCTTATGAACAACATTGCCGTGGATAAACGCATGTTGGAACAATGGTTAAAGT
CTGGTTTTATGGACAAAGGGCTGTTCTATCGTACAGATGAGGGAACACCTCAAGGCGGGGTTATATCCCCCACCTTGATG
CTAATGACCCTTGCAGGAATTGAGCTGCGCATAAAGTCTACCGCTCTCAAAAAGGGGGCAAGAGCTAACTTTATTGGATA
CGCCGACGATTTCGTCGTCACCTGTGCTTCAAAGGAAGTGCTGGAGAACGATATCAAACCGTTGATTGCTGATTTCTTAG
CAGAAAGAGGCTTAACACTCTCCGAAGAGAAAACGCACATTACTCATATCAGTCGTGGTTTTGATTTCCTAGGTTTTAAC
CATAGGAAGTACAAAGGAAAATTGCTCATTAAACCGAGTAAATCCAACACACTGTTGTTCTTGAGTAACTTGCGCGAACT
CATCAAAAAGCACGCAACTATCCCCGTCAACGATTTAATCAAATTGATAAATCCGAAACTACGGGGCTGGTCGAATTACT
ATCGACACTGCGTGGCCAAACAGGTATTCGGATATGTAGGTCACAAGCTATTCCATACGCTATGGCACTGGGCTAAAAGG
CGTCATCCAACCAAATCGAGAACTTGGATCGCTCTTAAGTACTTCATCAACCGTCAAGGCCAATGGCAATTTCACGGTTG
GCAGAAGATCATGAATATGGATTGTCAGTTCAATCTGTTTCAAATAGCCAAGGTGCCAATAGAGAGACATGTGAAAATCA
GGAGTGCCGCAACGCCTTTTGACCCTCAATACCAAGAATACTTGGCAAAGAGAAAGTCAAAAAGGCAATGTCGTAACTCT
TGGCATGAGCCTGCTCTCGCTGCTTTATAA

Upstream 100 bases:

>100_bases
CAGATACAGATCCTTATCTGGCACGAAAGTGGGCTGACTTCCGACTGGTCTTCCGTTGCAAGAGAATTTGAAGAACTTTA
TTCAAGGAGAAACGCAAATG

Downstream 100 bases:

>100_bases
GTTGCTGGGTGCCAATAGGTGCCTTCGTGAAGGCTTGAGCCTAGTGCGGTGAAAGTTGCACGCTGGGTTCTTAGAGGGAC
GGCACTTGGTAACAAGTGTC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 489; Mature: 489

Protein sequence:

>489_residues
MISKEISASPDSAQWSSINWKAVESHVLKLQMRIAKATREGKHGKAKALQWILTHSRSAKLLAVKRVSQNKGSKTPGIDG
VIWNTDTRRMKAVNQLSRKAYLAKPLKRIYIPKKNGKLRPLGIPCMVDRAQQALHLLALEPVSETLADPNSYGFRPNRST
ADAIAQCFKCLALKKSAQWVLEGDIKACFDKIGHQWLMNNIAVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPTLM
LMTLAGIELRIKSTALKKGARANFIGYADDFVVTCASKEVLENDIKPLIADFLAERGLTLSEEKTHITHISRGFDFLGFN
HRKYKGKLLIKPSKSNTLLFLSNLRELIKKHATIPVNDLIKLINPKLRGWSNYYRHCVAKQVFGYVGHKLFHTLWHWAKR
RHPTKSRTWIALKYFINRQGQWQFHGWQKIMNMDCQFNLFQIAKVPIERHVKIRSAATPFDPQYQEYLAKRKSKRQCRNS
WHEPALAAL

Sequences:

>Translated_489_residues
MISKEISASPDSAQWSSINWKAVESHVLKLQMRIAKATREGKHGKAKALQWILTHSRSAKLLAVKRVSQNKGSKTPGIDG
VIWNTDTRRMKAVNQLSRKAYLAKPLKRIYIPKKNGKLRPLGIPCMVDRAQQALHLLALEPVSETLADPNSYGFRPNRST
ADAIAQCFKCLALKKSAQWVLEGDIKACFDKIGHQWLMNNIAVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPTLM
LMTLAGIELRIKSTALKKGARANFIGYADDFVVTCASKEVLENDIKPLIADFLAERGLTLSEEKTHITHISRGFDFLGFN
HRKYKGKLLIKPSKSNTLLFLSNLRELIKKHATIPVNDLIKLINPKLRGWSNYYRHCVAKQVFGYVGHKLFHTLWHWAKR
RHPTKSRTWIALKYFINRQGQWQFHGWQKIMNMDCQFNLFQIAKVPIERHVKIRSAATPFDPQYQEYLAKRKSKRQCRNS
WHEPALAAL
>Mature_489_residues
MISKEISASPDSAQWSSINWKAVESHVLKLQMRIAKATREGKHGKAKALQWILTHSRSAKLLAVKRVSQNKGSKTPGIDG
VIWNTDTRRMKAVNQLSRKAYLAKPLKRIYIPKKNGKLRPLGIPCMVDRAQQALHLLALEPVSETLADPNSYGFRPNRST
ADAIAQCFKCLALKKSAQWVLEGDIKACFDKIGHQWLMNNIAVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPTLM
LMTLAGIELRIKSTALKKGARANFIGYADDFVVTCASKEVLENDIKPLIADFLAERGLTLSEEKTHITHISRGFDFLGFN
HRKYKGKLLIKPSKSNTLLFLSNLRELIKKHATIPVNDLIKLINPKLRGWSNYYRHCVAKQVFGYVGHKLFHTLWHWAKR
RHPTKSRTWIALKYFINRQGQWQFHGWQKIMNMDCQFNLFQIAKVPIERHVKIRSAATPFDPQYQEYLAKRKSKRQCRNS
WHEPALAAL

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226520, Length=319, Percent_Identity=27.8996865203762, Blast_Score=98, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6226521, Length=327, Percent_Identity=24.1590214067278, Blast_Score=94, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 56005; Mature: 56005

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISKEISASPDSAQWSSINWKAVESHVLKLQMRIAKATREGKHGKAKALQWILTHSRSAK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCH
LLAVKRVSQNKGSKTPGIDGVIWNTDTRRMKAVNQLSRKAYLAKPLKRIYIPKKNGKLRP
HHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
LGIPCMVDRAQQALHLLALEPVSETLADPNSYGFRPNRSTADAIAQCFKCLALKKSAQWV
CCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE
LEGDIKACFDKIGHQWLMNNIAVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPTLM
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHH
LMTLAGIELRIKSTALKKGARANFIGYADDFVVTCASKEVLENDIKPLIADFLAERGLTL
HHHHHCCEEEEEHHHHHCCCCCCCCEECCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCC
SEEKTHITHISRGFDFLGFNHRKYKGKLLIKPSKSNTLLFLSNLRELIKKHATIPVNDLI
CCCHHHHHHHHCCCHHCCCCCCEECCEEEEEECCCCCEEEHHHHHHHHHHCCCCCHHHHH
KLINPKLRGWSNYYRHCVAKQVFGYVGHKLFHTLWHWAKRRHPTKSRTWIALKYFINRQG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
QWQFHGWQKIMNMDCQFNLFQIAKVPIERHVKIRSAATPFDPQYQEYLAKRKSKRQCRNS
CEEEHHHHHHHCCCCCCCHHHHHHCCHHHCEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
WHEPALAAL
CCCCHHHCC
>Mature Secondary Structure
MISKEISASPDSAQWSSINWKAVESHVLKLQMRIAKATREGKHGKAKALQWILTHSRSAK
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCH
LLAVKRVSQNKGSKTPGIDGVIWNTDTRRMKAVNQLSRKAYLAKPLKRIYIPKKNGKLRP
HHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
LGIPCMVDRAQQALHLLALEPVSETLADPNSYGFRPNRSTADAIAQCFKCLALKKSAQWV
CCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEE
LEGDIKACFDKIGHQWLMNNIAVDKRMLEQWLKSGFMDKGLFYRTDEGTPQGGVISPTLM
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCHHHHH
LMTLAGIELRIKSTALKKGARANFIGYADDFVVTCASKEVLENDIKPLIADFLAERGLTL
HHHHHCCEEEEEHHHHHCCCCCCCCEECCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCC
SEEKTHITHISRGFDFLGFNHRKYKGKLLIKPSKSNTLLFLSNLRELIKKHATIPVNDLI
CCCHHHHHHHHCCCHHCCCCCCEECCEEEEEECCCCCEEEHHHHHHHHHHCCCCCHHHHH
KLINPKLRGWSNYYRHCVAKQVFGYVGHKLFHTLWHWAKRRHPTKSRTWIALKYFINRQG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
QWQFHGWQKIMNMDCQFNLFQIAKVPIERHVKIRSAATPFDPQYQEYLAKRKSKRQCRNS
CEEEHHHHHHHCCCCCCCHHHHHHCCHHHCEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
WHEPALAAL
CCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]