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The map label for this gene is yedS [C]

Identifier: 156977945

GI number: 156977945

Start: 1875468

End: 1876460

Strand: Reverse

Name: yedS [C]

Synonym: VIBHAR_06741

Alternate gene names: 156977945

Gene position: 1876460-1875468 (Counterclockwise)

Preceding gene: 156977946

Following gene: 156977940

Centisome position: 85.14

GC content: 43.3

Gene sequence:

>993_bases
ATGTTAACAATGAAAATGAAAACTCTAGCCGTTGCAGTGGCGGCACTAGCATGTGGTTCTCAAGCTTTCGCAGCAGAAGT
TTACAACAGCGATGGCACATCAATGTCGATTGGTGGTCACTTTACCACTGATATTGGTGATAACGGCGACAATGTAGAAG
TCGGAGAAGTATCTCCTCGTATCAATATTGTCGGTAAACAAGATTTGGGGAATGGCCTAACTGTAGAAGCAAAAGGAGAA
TGGCAAACCAACCTTGTTGACGGTGGTGATACAACCTTTTCAACCCGTTTAGGTTACTTAGCTTTACACAGCGAAATGGG
TAAAGTGACCGTAGGCACGCAATGGTCTCCTTACTACAGTGTTGCAAGTTTAACGGATATGCCAATTAAATATGCAAACG
ATTTTCTTTACGATGGCGGTCGTTCGGGTTCATGGCGTTCGATTGGTACGGGCCGTGCAAACAAAATGCTAAGTTATTCA
AACAACTTCGATTTTGGTAATGATATGTCGTTGTACTTTGGCGTTGGTTGGCAAGGTGAAACTAACGCTGGAGGTTCTCA
GTTTGATGATCGCGGCCAGATTGCAGCAAGTTTAAGCTTCTCAGATTTCAATGTCGGTCTTGCATATACAGGTGGTGATG
TTGATTCGGAAAAACTAACCTCGACAGCTATTGCTGCAAGCTATGGTTCTTATGGCAAGGGTATTTATGTGGCGGGTGTA
TATGGTTTGAACGAGAACTTGTATGGTATGACGGACTCAGATCAAATCTCAGGTCTTCTAGCATATGGTCTAGATAATGG
CCTTAACTTTATCCTTTACTATGAAAATGTTGATCGCGATGACAATGTGTTAGACCCTAACCGCGATGTTTTAGCTCCTC
AAGTCGAGTACTCTGTGACCTCGAAGCTGAAAACTTTCGCTGGTTTTAGAACGCACATGGGCGACGATAAATCTGATGAC
GAATGGTCACTTGGTGCTCGTTACTACTTCTAA

Upstream 100 bases:

>100_bases
TTTGTTTCATTTATATTTCATTACTACCTTGTTATCTGTTCGTTGCGATTGATTTGTTTTATTTTGCTGTCGGGGCGAAC
CAATACAAACAACTATATGG

Downstream 100 bases:

>100_bases
TTAATAGGACAGTTTCTACTGCCTAAACACATTTATTGTGTTAACGCCTACTCGCTGTGAGTAGGCGTTTTTCTTTCTGT
TGGCTCATCTGAGTCATGTC

Product: hypothetical protein

Products: NA

Alternate protein names: Outer Membrane Protein; Porin Gram-Negative Type; Outer Membrane Protein N; Outer Membrane Protein OmpU; Tetrachloroethylene Dehalogenase; Outer Membrane Protein C; Outer Membrane Pore Protein

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MLTMKMKTLAVAVAALACGSQAFAAEVYNSDGTSMSIGGHFTTDIGDNGDNVEVGEVSPRINIVGKQDLGNGLTVEAKGE
WQTNLVDGGDTTFSTRLGYLALHSEMGKVTVGTQWSPYYSVASLTDMPIKYANDFLYDGGRSGSWRSIGTGRANKMLSYS
NNFDFGNDMSLYFGVGWQGETNAGGSQFDDRGQIAASLSFSDFNVGLAYTGGDVDSEKLTSTAIAASYGSYGKGIYVAGV
YGLNENLYGMTDSDQISGLLAYGLDNGLNFILYYENVDRDDNVLDPNRDVLAPQVEYSVTSKLKTFAGFRTHMGDDKSDD
EWSLGARYYF

Sequences:

>Translated_330_residues
MLTMKMKTLAVAVAALACGSQAFAAEVYNSDGTSMSIGGHFTTDIGDNGDNVEVGEVSPRINIVGKQDLGNGLTVEAKGE
WQTNLVDGGDTTFSTRLGYLALHSEMGKVTVGTQWSPYYSVASLTDMPIKYANDFLYDGGRSGSWRSIGTGRANKMLSYS
NNFDFGNDMSLYFGVGWQGETNAGGSQFDDRGQIAASLSFSDFNVGLAYTGGDVDSEKLTSTAIAASYGSYGKGIYVAGV
YGLNENLYGMTDSDQISGLLAYGLDNGLNFILYYENVDRDDNVLDPNRDVLAPQVEYSVTSKLKTFAGFRTHMGDDKSDD
EWSLGARYYF
>Mature_330_residues
MLTMKMKTLAVAVAALACGSQAFAAEVYNSDGTSMSIGGHFTTDIGDNGDNVEVGEVSPRINIVGKQDLGNGLTVEAKGE
WQTNLVDGGDTTFSTRLGYLALHSEMGKVTVGTQWSPYYSVASLTDMPIKYANDFLYDGGRSGSWRSIGTGRANKMLSYS
NNFDFGNDMSLYFGVGWQGETNAGGSQFDDRGQIAASLSFSDFNVGLAYTGGDVDSEKLTSTAIAASYGSYGKGIYVAGV
YGLNENLYGMTDSDQISGLLAYGLDNGLNFILYYENVDRDDNVLDPNRDVLAPQVEYSVTSKLKTFAGFRTHMGDDKSDD
EWSLGARYYF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Integral membrane protein. Outer membrane (By similarity) [C]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35555; Mature: 35555

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTMKMKTLAVAVAALACGSQAFAAEVYNSDGTSMSIGGHFTTDIGDNGDNVEVGEVSPR
CEEEEHHHHHHHHHHHHCCCHHEEEEEECCCCCEEEECCEEEECCCCCCCCEEEECCCCE
INIVGKQDLGNGLTVEAKGEWQTNLVDGGDTTFSTRLGYLALHSEMGKVTVGTQWSPYYS
EEEEECCCCCCCCEEEECCCEEEEEECCCCCEEHHHHEEEEEECCCCEEEECCCCCCCEE
VASLTDMPIKYANDFLYDGGRSGSWRSIGTGRANKMLSYSNNFDFGNDMSLYFGVGWQGE
EHHHCCCCHHHHCHHEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCC
TNAGGSQFDDRGQIAASLSFSDFNVGLAYTGGDVDSEKLTSTAIAASYGSYGKGIYVAGV
CCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEE
YGLNENLYGMTDSDQISGLLAYGLDNGLNFILYYENVDRDDNVLDPNRDVLAPQVEYSVT
EECCCCCCCCCCCHHHCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCHHHHH
SKLKTFAGFRTHMGDDKSDDEWSLGARYYF
HHHHHHHHHHHHCCCCCCCCCCCCCEEECC
>Mature Secondary Structure
MLTMKMKTLAVAVAALACGSQAFAAEVYNSDGTSMSIGGHFTTDIGDNGDNVEVGEVSPR
CEEEEHHHHHHHHHHHHCCCHHEEEEEECCCCCEEEECCEEEECCCCCCCCEEEECCCCE
INIVGKQDLGNGLTVEAKGEWQTNLVDGGDTTFSTRLGYLALHSEMGKVTVGTQWSPYYS
EEEEECCCCCCCCEEEECCCEEEEEECCCCCEEHHHHEEEEEECCCCEEEECCCCCCCEE
VASLTDMPIKYANDFLYDGGRSGSWRSIGTGRANKMLSYSNNFDFGNDMSLYFGVGWQGE
EHHHCCCCHHHHCHHEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCC
TNAGGSQFDDRGQIAASLSFSDFNVGLAYTGGDVDSEKLTSTAIAASYGSYGKGIYVAGV
CCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEE
YGLNENLYGMTDSDQISGLLAYGLDNGLNFILYYENVDRDDNVLDPNRDVLAPQVEYSVT
EECCCCCCCCCCCHHHCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCHHHHH
SKLKTFAGFRTHMGDDKSDDEWSLGARYYF
HHHHHHHHHHHHCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA