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The map label for this gene is csgA [H]

Identifier: 156977899

GI number: 156977899

Start: 1826046

End: 1826753

Strand: Reverse

Name: csgA [H]

Synonym: VIBHAR_06691

Alternate gene names: 156977899

Gene position: 1826753-1826046 (Counterclockwise)

Preceding gene: 156977900

Following gene: 156977897

Centisome position: 82.88

GC content: 46.47

Gene sequence:

>708_bases
ATGGAAATACTCATCATCGGTGGTAACGGTGGAATTGGTTTGGCGATGGTGCAAGAAGCCGCAGCTCGGTTCTCTCAAGC
TCGTGTGCATGCCACTTATCGTAAGAAGCAACCAGATTGGCAACACCCAAATGTCGTTTGGCATCAAGTGGATGTATCGC
AAGAAGGGGAGGTAAAAGCGTTCAGTGAGCAGATTGAACACGTCGATTGGTTGGTGAACTGCGTTGGTATGTTGCACACC
CAAGAAAAAGGTCCTGAGAAGAATCTTAATTCGCTCGACGCAGACTTTTTTCAGCAAACCATCATGGTTAATACTTTGCC
AAGTTTGCTGTTGGCGAAATACTTCACACCCAAGCTAAAACGCAGTACTGCACCTAAGTTTGCGACCATTTCGGCCAAAG
TTGGCAGCATTAGCGATAATCAGTTAGGTGGTTGGTACAGCTATCGAGCATCGAAAGCCGCATTAAACATGTTCCTCAAA
ACCATGTCGATCGAATGGCAAAGAATGGTGAAACATGGCACGGTGCTTTCACTTCATCCAGGTACTACGGACACAGCTTT
GTCGGCACCTTTTCAAACCAATGTGCCAGAAGGAAAGTTGTTCACGCCAGAGCGAGTTGCTAAGGATTTATTAGGCTTGA
TAGAAAAAGCATCCCCGCAAGATAGCGGGGTGTTTTGGGCTTATGATGGGACGTTATTGCCTTGGTAA

Upstream 100 bases:

>100_bases
TCGGGATGATTTTCCGCTCTTGGGACAACATGGAAGAACAACAACGCCAAGCGATACTCGATACCGCAGAGCATTACATA
GAAAACGTGGAGAATTTGTG

Downstream 100 bases:

>100_bases
GAGAACGCGCAAAAACGTTGATACAAAGGAAATAACGATCTCCAGAGAGGCTCGGAGTGACCTATGTTTTCGTTGATTTA
TTTCTTCGACAACGCTCAGA

Product: C factor cell-cell signaling protein

Products: NA

Alternate protein names: C signal [H]

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MEILIIGGNGGIGLAMVQEAAARFSQARVHATYRKKQPDWQHPNVVWHQVDVSQEGEVKAFSEQIEHVDWLVNCVGMLHT
QEKGPEKNLNSLDADFFQQTIMVNTLPSLLLAKYFTPKLKRSTAPKFATISAKVGSISDNQLGGWYSYRASKAALNMFLK
TMSIEWQRMVKHGTVLSLHPGTTDTALSAPFQTNVPEGKLFTPERVAKDLLGLIEKASPQDSGVFWAYDGTLLPW

Sequences:

>Translated_235_residues
MEILIIGGNGGIGLAMVQEAAARFSQARVHATYRKKQPDWQHPNVVWHQVDVSQEGEVKAFSEQIEHVDWLVNCVGMLHT
QEKGPEKNLNSLDADFFQQTIMVNTLPSLLLAKYFTPKLKRSTAPKFATISAKVGSISDNQLGGWYSYRASKAALNMFLK
TMSIEWQRMVKHGTVLSLHPGTTDTALSAPFQTNVPEGKLFTPERVAKDLLGLIEKASPQDSGVFWAYDGTLLPW
>Mature_235_residues
MEILIIGGNGGIGLAMVQEAAARFSQARVHATYRKKQPDWQHPNVVWHQVDVSQEGEVKAFSEQIEHVDWLVNCVGMLHT
QEKGPEKNLNSLDADFFQQTIMVNTLPSLLLAKYFTPKLKRSTAPKFATISAKVGSISDNQLGGWYSYRASKAALNMFLK
TMSIEWQRMVKHGTVLSLHPGTTDTALSAPFQTNVPEGKLFTPERVAKDLLGLIEKASPQDSGVFWAYDGTLLPW

Specific function: Cell-cell signaling protein required for fruiting body morphogenesis. Necessary for cellular aggregation, for spore differentiation, and for gene expression that is initiated after 6 hour of starvation [H]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To yeast YKL071W [H]

Homologues:

Organism=Drosophila melanogaster, GI24640547, Length=265, Percent_Identity=26.7924528301887, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: NA

Molecular weight: Translated: 26142; Mature: 26142

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEILIIGGNGGIGLAMVQEAAARFSQARVHATYRKKQPDWQHPNVVWHQVDVSQEGEVKA
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHH
FSEQIEHVDWLVNCVGMLHTQEKGPEKNLNSLDADFFQQTIMVNTLPSLLLAKYFTPKLK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
RSTAPKFATISAKVGSISDNQLGGWYSYRASKAALNMFLKTMSIEWQRMVKHGTVLSLHP
HCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
GTTDTALSAPFQTNVPEGKLFTPERVAKDLLGLIEKASPQDSGVFWAYDGTLLPW
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCC
>Mature Secondary Structure
MEILIIGGNGGIGLAMVQEAAARFSQARVHATYRKKQPDWQHPNVVWHQVDVSQEGEVKA
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHH
FSEQIEHVDWLVNCVGMLHTQEKGPEKNLNSLDADFFQQTIMVNTLPSLLLAKYFTPKLK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
RSTAPKFATISAKVGSISDNQLGGWYSYRASKAALNMFLKTMSIEWQRMVKHGTVLSLHP
HCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
GTTDTALSAPFQTNVPEGKLFTPERVAKDLLGLIEKASPQDSGVFWAYDGTLLPW
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152896; 2107980; 2118510; 1372277 [H]