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The map label for this gene is yhcS [C]

Identifier: 156977891

GI number: 156977891

Start: 1819598

End: 1820506

Strand: Direct

Name: yhcS [C]

Synonym: VIBHAR_06683

Alternate gene names: 156977891

Gene position: 1819598-1820506 (Clockwise)

Preceding gene: 156977889

Following gene: 156977894

Centisome position: 82.56

GC content: 48.29

Gene sequence:

>909_bases
GTGAATGCCATTGCGTCACTGCCAGTATTTGTCGCTGTCGTCGAATGCGGCAGCTTTTCCCTTGCTGCCAAGCAGTTGAA
CCTCACCAAATCGGCGATCAGCAAACGCATTAATCAACTCGAAGATGACCTCGGTATTCGCTTGCTTAATCGCACCACAA
GAAAACTCAGCCTAACCGAAGCTGGACGTCGATACTTCGAGTACGCTTCACAAGCAGTAAACCTTACTCAACAAGGTGTC
GATGCCGTTTCCGAGTTGCAAGGCTCACCGCAAGGTAGGCTCAAAATCACAGCCCCGATGTCTTTTGGTGTTTTGCACGT
TGCGCCACTTATCAGCGAATTTCTTGCACGTTATCCGAAAGTTGAAGTTGATTTGCAGCTAGAAGATGCCATGGTGGATT
TGGTTGAGCAAGGCTTTGATTTGGGGGTTCGCATCGGCGAACTTGCGACTTCTAACCTTGTAGCGAAGCGCCTTGCTCCG
TGTAAAAGCGTATTGTGCGCCTCTCCCGAATACCTAGAAGAATTTGGCATACCAACCAAACCAAGTGATTTGGTTACGCA
CAACTGTTTGCGTTATTCGTATTTCCGAGGCGGCGTCGAGTGGATGTTTATCAACAGCGGTAACGAATATAAAGTGCTAC
CCAAAGGCAACTTTGTGGTCAACAACAGCGAAGCGATTCGCCAGTTGCTGTTGAGTGGGTCTGGTATCGCTCAATTGCCG
ACTTTTATTGCAGGGAAGGACTTTGCTGCTGGCAACTTAAAACCACTGATGGAAGAGTTCGCATTACCAGAACATGCCAT
CTATGCCGTATTCCCCGAACGCAAACACATGCCATTGAAAGTACGTGTCTTCATCGACTTCATCAGCGAGAAGCTTAGCA
CTGATACACCGTATTGGGATCGCTACTGA

Upstream 100 bases:

>100_bases
TTTTCTTCTTTTAGATAATCTCTATAATTGGAAAATGATTGTAGCGTTTTGCTCAACAATATAACTAATAATAGATCCTT
CAATAACCTAGGAGCACACC

Downstream 100 bases:

>100_bases
CAGGTTCTGACAACTCAGTTTGGAGAGTTGACAGGTGAAACCGTTCTATCGGTGCGGGCAGCCTTTATCGTAGGCCCTAC
GTAACGCCTTTGTTAACTCT

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNAIASLPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGRRYFEYASQAVNLTQQGV
DAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPKVEVDLQLEDAMVDLVEQGFDLGVRIGELATSNLVAKRLAP
CKSVLCASPEYLEEFGIPTKPSDLVTHNCLRYSYFRGGVEWMFINSGNEYKVLPKGNFVVNNSEAIRQLLLSGSGIAQLP
TFIAGKDFAAGNLKPLMEEFALPEHAIYAVFPERKHMPLKVRVFIDFISEKLSTDTPYWDRY

Sequences:

>Translated_302_residues
MNAIASLPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGRRYFEYASQAVNLTQQGV
DAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPKVEVDLQLEDAMVDLVEQGFDLGVRIGELATSNLVAKRLAP
CKSVLCASPEYLEEFGIPTKPSDLVTHNCLRYSYFRGGVEWMFINSGNEYKVLPKGNFVVNNSEAIRQLLLSGSGIAQLP
TFIAGKDFAAGNLKPLMEEFALPEHAIYAVFPERKHMPLKVRVFIDFISEKLSTDTPYWDRY
>Mature_302_residues
MNAIASLPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTEAGRRYFEYASQAVNLTQQGV
DAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPKVEVDLQLEDAMVDLVEQGFDLGVRIGELATSNLVAKRLAP
CKSVLCASPEYLEEFGIPTKPSDLVTHNCLRYSYFRGGVEWMFINSGNEYKVLPKGNFVVNNSEAIRQLLLSGSGIAQLP
TFIAGKDFAAGNLKPLMEEFALPEHAIYAVFPERKHMPLKVRVFIDFISEKLSTDTPYWDRY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=291, Percent_Identity=34.020618556701, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=36.6782006920415, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=33.3333333333333, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=33.445945945946, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=32.4137931034483, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=32.3333333333333, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=29.3515358361775, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1788706, Length=303, Percent_Identity=26.7326732673267, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=37.6068376068376, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1786448, Length=296, Percent_Identity=27.3648648648649, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789173, Length=297, Percent_Identity=27.6094276094276, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788481, Length=298, Percent_Identity=25.8389261744966, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI145693105, Length=155, Percent_Identity=29.6774193548387, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790011, Length=299, Percent_Identity=23.4113712374582, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790262, Length=248, Percent_Identity=26.2096774193548, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790783, Length=288, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787806, Length=137, Percent_Identity=29.9270072992701, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787601, Length=145, Percent_Identity=28.2758620689655, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=257, Percent_Identity=23.7354085603113, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788748, Length=149, Percent_Identity=28.1879194630872, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790208, Length=140, Percent_Identity=30.7142857142857, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787879, Length=139, Percent_Identity=30.2158273381295, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786508, Length=135, Percent_Identity=31.1111111111111, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33539; Mature: 33539

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIASLPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTE
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGRRYFEYASQAVNLTQQGVDAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC
VEVDLQLEDAMVDLVEQGFDLGVRIGELATSNLVAKRLAPCKSVLCASPEYLEEFGIPTK
EEEEEEHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
PSDLVTHNCLRYSYFRGGVEWMFINSGNEYKVLPKGNFVVNNSEAIRQLLLSGSGIAQLP
CHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCEEECCHHHHHHHHHCCCCHHHCC
TFIAGKDFAAGNLKPLMEEFALPEHAIYAVFPERKHMPLKVRVFIDFISEKLSTDTPYWD
HHHCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHCCCCCCCC
RY
CC
>Mature Secondary Structure
MNAIASLPVFVAVVECGSFSLAAKQLNLTKSAISKRINQLEDDLGIRLLNRTTRKLSLTE
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGRRYFEYASQAVNLTQQGVDAVSELQGSPQGRLKITAPMSFGVLHVAPLISEFLARYPK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC
VEVDLQLEDAMVDLVEQGFDLGVRIGELATSNLVAKRLAPCKSVLCASPEYLEEFGIPTK
EEEEEEHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCC
PSDLVTHNCLRYSYFRGGVEWMFINSGNEYKVLPKGNFVVNNSEAIRQLLLSGSGIAQLP
CHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCEEECCHHHHHHHHHCCCCHHHCC
TFIAGKDFAAGNLKPLMEEFALPEHAIYAVFPERKHMPLKVRVFIDFISEKLSTDTPYWD
HHHCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHCCCCCCCC
RY
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]