Click here to switch to the map view.

The map label for this gene is ydiK [H]

Identifier: 156977852

GI number: 156977852

Start: 1783707

End: 1784804

Strand: Direct

Name: ydiK [H]

Synonym: VIBHAR_06643

Alternate gene names: 156977852

Gene position: 1783707-1784804 (Clockwise)

Preceding gene: 156977851

Following gene: 156977854

Centisome position: 80.93

GC content: 48.91

Gene sequence:

>1098_bases
ATGGTGGAATCTGCTATACGAATCGGCTTGATTTTAATCTTGCTGATGTTTACGTACGACATCATCAAAGCTTTCATTCT
TCCTGTGATTTGGGGTGCCATCATCGCGGTAGCATTGATGCCAATCTGTATGAAGCTGGAAAGAGTGTACGGCGGGAAAC
GTGGTCTAGCCGCAACGACAATTGCATTGCTAGGTATCGCCCTTCTGGTGGCGCCTCTTGTCATGGTTTCGGGCTCGATT
GTTGATGGTGCAACTCACGCACTTGAAGTTCTGCAAAACGGCGACATCAAAATCCCTGGTCCAAAACCTTCTGTTGCTGA
ATGGCCTCTTGTCGGTGATAAGCTTTATGAAGTATGGACACTGTTTGCGACTAACTTAGAAAAAGCAATTCAAACCTTCA
TGCCACAAATCAAGTCGGGTCTAACGTCTCTGCTTGGCATGGTCGGTGGTGCTCTAGGTAGCTTGCTACTTTCTATCATT
TCACTAGCGATTGCTGCTGGCTTTATGACTTACTCGGAGTCAATCGCCTCTGGCTTGCGAACCGTTGCTGTGCGTACGGC
AGGTGATAACGCGAAGAGTTGGACAACGCTTATTGCCGCAACCATTAAGAGTGTATTGCTTGGCGTAGTGGGTGTTGCTG
CAATCCAAGCGCTACTGATTGGTGCGGGCTTCTTTATCTTTGGCGTTCCGGCAGCAGGCCTACTGACTCTGATTCTGATG
ATTCTTTGTATCGCTCAGCTCCCTGCACTGCTTGCTGTACTGCCGGTTTTTGGCTACATGTATATGACCAACGACACGAG
CACAGCAACCATGTTTACGGTTTGGGTTGTGGTCGCTGCGCTGTCTGAGAACTTGTTTAAACCAATGTTGATGGGCCGCG
GTGTTGATGTTCCAATGCCAGTGATTCTGCTTGGTGCTATCGGCGGCATGCTCTTCTACGGCATCGTTGGTCTGTTCTTG
GGTGCCGTTATCCTAGCAATTTGGTACGAACTGTTCGTTTGGTGGTTGAGCATTGAGAAAGCACAACAGCAAGAAGAGAG
CTTGCGAGAAGAGAAGGATCAAGCACAAGCCGAATCAGGACACGGTGCGGGCATCTAA

Upstream 100 bases:

>100_bases
GATTGTTGTTTCAAGTCTCGTCAGTTCCAACATTGAACATCAGGTAAACAAAAATGGATAAACAATCGGAAAAAATGAGA
GTAAGATTTTCATCAGTAAC

Downstream 100 bases:

>100_bases
TCTTTATTAATCACCTCATCAATTGAAACAAACCGCTGCCTTTGCAGCGGTTTGCGCAACTAAGTTCACATTTTCATTGT
TTGCTATCCGATTAAAATGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MVESAIRIGLILILLMFTYDIIKAFILPVIWGAIIAVALMPICMKLERVYGGKRGLAATTIALLGIALLVAPLVMVSGSI
VDGATHALEVLQNGDIKIPGPKPSVAEWPLVGDKLYEVWTLFATNLEKAIQTFMPQIKSGLTSLLGMVGGALGSLLLSII
SLAIAAGFMTYSESIASGLRTVAVRTAGDNAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLTLILM
ILCIAQLPALLAVLPVFGYMYMTNDTSTATMFTVWVVVAALSENLFKPMLMGRGVDVPMPVILLGAIGGMLFYGIVGLFL
GAVILAIWYELFVWWLSIEKAQQQEESLREEKDQAQAESGHGAGI

Sequences:

>Translated_365_residues
MVESAIRIGLILILLMFTYDIIKAFILPVIWGAIIAVALMPICMKLERVYGGKRGLAATTIALLGIALLVAPLVMVSGSI
VDGATHALEVLQNGDIKIPGPKPSVAEWPLVGDKLYEVWTLFATNLEKAIQTFMPQIKSGLTSLLGMVGGALGSLLLSII
SLAIAAGFMTYSESIASGLRTVAVRTAGDNAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLTLILM
ILCIAQLPALLAVLPVFGYMYMTNDTSTATMFTVWVVVAALSENLFKPMLMGRGVDVPMPVILLGAIGGMLFYGIVGLFL
GAVILAIWYELFVWWLSIEKAQQQEESLREEKDQAQAESGHGAGI
>Mature_365_residues
MVESAIRIGLILILLMFTYDIIKAFILPVIWGAIIAVALMPICMKLERVYGGKRGLAATTIALLGIALLVAPLVMVSGSI
VDGATHALEVLQNGDIKIPGPKPSVAEWPLVGDKLYEVWTLFATNLEKAIQTFMPQIKSGLTSLLGMVGGALGSLLLSII
SLAIAAGFMTYSESIASGLRTVAVRTAGDNAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLTLILM
ILCIAQLPALLAVLPVFGYMYMTNDTSTATMFTVWVVVAALSENLFKPMLMGRGVDVPMPVILLGAIGGMLFYGIVGLFL
GAVILAIWYELFVWWLSIEKAQQQEESLREEKDQAQAESGHGAGI

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=322, Percent_Identity=31.9875776397516, Blast_Score=159, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 38667; Mature: 38667

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVESAIRIGLILILLMFTYDIIKAFILPVIWGAIIAVALMPICMKLERVYGGKRGLAATT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IALLGIALLVAPLVMVSGSIVDGATHALEVLQNGDIKIPGPKPSVAEWPLVGDKLYEVWT
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHH
LFATNLEKAIQTFMPQIKSGLTSLLGMVGGALGSLLLSIISLAIAAGFMTYSESIASGLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVAVRTAGDNAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLTLILM
HHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ILCIAQLPALLAVLPVFGYMYMTNDTSTATMFTVWVVVAALSENLFKPMLMGRGVDVPMP
HHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
VILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWLSIEKAQQQEESLREEKDQAQAESG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HGAGI
CCCCC
>Mature Secondary Structure
MVESAIRIGLILILLMFTYDIIKAFILPVIWGAIIAVALMPICMKLERVYGGKRGLAATT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
IALLGIALLVAPLVMVSGSIVDGATHALEVLQNGDIKIPGPKPSVAEWPLVGDKLYEVWT
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHH
LFATNLEKAIQTFMPQIKSGLTSLLGMVGGALGSLLLSIISLAIAAGFMTYSESIASGLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVAVRTAGDNAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLTLILM
HHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
ILCIAQLPALLAVLPVFGYMYMTNDTSTATMFTVWVVVAALSENLFKPMLMGRGVDVPMP
HHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
VILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWLSIEKAQQQEESLREEKDQAQAESG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
HGAGI
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]