| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
Click here to switch to the map view.
The map label for this gene is 156977809
Identifier: 156977809
GI number: 156977809
Start: 1740456
End: 1742060
Strand: Direct
Name: 156977809
Synonym: VIBHAR_06597
Alternate gene names: NA
Gene position: 1740456-1742060 (Clockwise)
Preceding gene: 156977808
Following gene: 156977810
Centisome position: 78.97
GC content: 51.15
Gene sequence:
>1605_bases GTGAAAGTTGCACGCTGGGTTCTTAGAGGGACGGCACTTGGTAACAAGTGTCGTCTACTCGACGATAAGATTGATACGCT GAAAGAGTCGATCCGCACTGCCGATGCCAACAAAGATGGCAAAGCAGACTTCACGCGCTACGACACTTTCTCTTTGTGGG ATACCTACCGCGCAGTTCAACCGCTGTCTTCGATTCTTGAGCCTGACCGCCTAGCCGACGTGGTGCTGTCTATGCTGTCT TACGCCGAAGAAGAATGGGTGGATGACAAAGGCAACGTGCGCAAAGGTCGCCTGCCTGAGTGGACATTCAAAGGCAACGA AACTGGCATGATGATGGGCATGCACTCAACGCCTGTGATTCATGATGTGTTGTCGAAAGGCTCACTAGAAAAACGCATGA TCGATCTTGGCTTCACAGAAGCAGAGCGCAAAGACGTTAAAGAACGTTTAGTTGAAGCGATGATCACTGACGCGCGCGCC GCAACGAGCCAAGGCGTAGCATGGATCAAAGAGTACGAAGAACAAGGTTACGTGCCAGCGCAATTGCACGACACTCCACC AGATTCTTACGGCGGTCACTCACCATTTAAAGACTCTTGGACAGCATCTTACTCGCTTGAGTACTCAATGAACGACTGGG CAATCGCGCAATCGATCAAAGAAGTGTTCGGTGAAGAAGATCCACGCTACACCGAGTTCGCTAACCGTTCTAAAAACTGG CAAGCGCAATTCGACTTCGGCGGTAAGCAGTACCAAGGTTGGTTCAAAGCCCGTGACTACGATGGCGAGTTTATCGATGC AGGTTGGGTAGACCCAATCACCGGTCGTGCGGTGGGTAAAGACTGGCGTCCAGACATGTTTAACTGGGCATTCTCTGAAT CGAACGGCTGGCAATACTCATTCAGTGTTCAGCACGACATTCATGGCTTGATTGACCTGATGACACGCTTCGATAAGACA CAAAACCCTGAAGCAGAACGCGGTGACTTGTTCGCAGCACGCTTAGATGAGTACTGGTCAACCTACCCAGACCGCAATGC TGGCGACAACCAATTCCCAGTGTTCAACACAGGTAACGTTGGTCAGCACGTACAAGGTAACGAACCAGATATCCACGTGC CGTACTTGTACAACTACGTGGGTCAACCTTGGAAAGGTCAGGCAGCCATCGCCGCAGCGACCAACATTTGCTACAAGAAC ACCGCTGACGGCATTTGTGGTAACGACGACTTCGGTACGCTCTCTGCGTGGTTCGTGTTCCGTGCACTTGGCTTCTACCC AGTGAACGCTTCTTCTGGCATCTACGAAATCGGTACTCCGCTGTTTGAAAGCGCGTCTATCGATGTCGGCAACAACCAGA AGTTCACCGTTACCGCGAAGAACGTTAGCCGCGAAAACATCTTCATTCAATCGGCTCGCTACAACGGCAAAGACTTCAAC CGCACTTACCTGACTCATGACGAAATCATGTACGGCGGTGAGTTGGAGTTCGTGATGGGCGACAAACCAAATCAACGTTG GGGCTCTCTAGAGCAAGATCTTCCACCAGCACAAGGCATCGGTGAGTTCTTGCATGAAGACGAGATGCCAGCAGGTTCTC GTTAA
Upstream 100 bases:
>100_bases AAAAAGGCAATGTCGTAACTCTTGGCATGAGCCTGCTCTCGCTGCTTTATAAGTTGCTGGGTGCCAATAGGTGCCTTCGT GAAGGCTTGAGCCTAGTGCG
Downstream 100 bases:
>100_bases TCCCAATAGTGACAACTCAGCCGGGGGAGCGCATCTCCCGGCTATCCCTACAAGAAAATTTTATAAGCAGTCCTTTATAA ACAGTCTCTTATAAACACTT
Product: alpha-1,2-mannosidase
Products: NA
Alternate protein names: Alpha-1 2-Mannosidase Family Protein; Glycoside Hydrolase Family; Sugar Hydrolase; Glycosyl Hydrolase Family; Secreted Protein; Glycoside Hydrolase Family Protein; Outer Membrane Protein; Exported Alpha-1 2-Mannosidase; Alpha-1 2-Mannosidase Protein; Immunoreactive; Antigen; Glycosyltransferase; Lipoprotein; Mannosidase
Number of amino acids: Translated: 534; Mature: 534
Protein sequence:
>534_residues MKVARWVLRGTALGNKCRLLDDKIDTLKESIRTADANKDGKADFTRYDTFSLWDTYRAVQPLSSILEPDRLADVVLSMLS YAEEEWVDDKGNVRKGRLPEWTFKGNETGMMMGMHSTPVIHDVLSKGSLEKRMIDLGFTEAERKDVKERLVEAMITDARA ATSQGVAWIKEYEEQGYVPAQLHDTPPDSYGGHSPFKDSWTASYSLEYSMNDWAIAQSIKEVFGEEDPRYTEFANRSKNW QAQFDFGGKQYQGWFKARDYDGEFIDAGWVDPITGRAVGKDWRPDMFNWAFSESNGWQYSFSVQHDIHGLIDLMTRFDKT QNPEAERGDLFAARLDEYWSTYPDRNAGDNQFPVFNTGNVGQHVQGNEPDIHVPYLYNYVGQPWKGQAAIAAATNICYKN TADGICGNDDFGTLSAWFVFRALGFYPVNASSGIYEIGTPLFESASIDVGNNQKFTVTAKNVSRENIFIQSARYNGKDFN RTYLTHDEIMYGGELEFVMGDKPNQRWGSLEQDLPPAQGIGEFLHEDEMPAGSR
Sequences:
>Translated_534_residues MKVARWVLRGTALGNKCRLLDDKIDTLKESIRTADANKDGKADFTRYDTFSLWDTYRAVQPLSSILEPDRLADVVLSMLS YAEEEWVDDKGNVRKGRLPEWTFKGNETGMMMGMHSTPVIHDVLSKGSLEKRMIDLGFTEAERKDVKERLVEAMITDARA ATSQGVAWIKEYEEQGYVPAQLHDTPPDSYGGHSPFKDSWTASYSLEYSMNDWAIAQSIKEVFGEEDPRYTEFANRSKNW QAQFDFGGKQYQGWFKARDYDGEFIDAGWVDPITGRAVGKDWRPDMFNWAFSESNGWQYSFSVQHDIHGLIDLMTRFDKT QNPEAERGDLFAARLDEYWSTYPDRNAGDNQFPVFNTGNVGQHVQGNEPDIHVPYLYNYVGQPWKGQAAIAAATNICYKN TADGICGNDDFGTLSAWFVFRALGFYPVNASSGIYEIGTPLFESASIDVGNNQKFTVTAKNVSRENIFIQSARYNGKDFN RTYLTHDEIMYGGELEFVMGDKPNQRWGSLEQDLPPAQGIGEFLHEDEMPAGSR >Mature_534_residues MKVARWVLRGTALGNKCRLLDDKIDTLKESIRTADANKDGKADFTRYDTFSLWDTYRAVQPLSSILEPDRLADVVLSMLS YAEEEWVDDKGNVRKGRLPEWTFKGNETGMMMGMHSTPVIHDVLSKGSLEKRMIDLGFTEAERKDVKERLVEAMITDARA ATSQGVAWIKEYEEQGYVPAQLHDTPPDSYGGHSPFKDSWTASYSLEYSMNDWAIAQSIKEVFGEEDPRYTEFANRSKNW QAQFDFGGKQYQGWFKARDYDGEFIDAGWVDPITGRAVGKDWRPDMFNWAFSESNGWQYSFSVQHDIHGLIDLMTRFDKT QNPEAERGDLFAARLDEYWSTYPDRNAGDNQFPVFNTGNVGQHVQGNEPDIHVPYLYNYVGQPWKGQAAIAAATNICYKN TADGICGNDDFGTLSAWFVFRALGFYPVNASSGIYEIGTPLFESASIDVGNNQKFTVTAKNVSRENIFIQSARYNGKDFN RTYLTHDEIMYGGELEFVMGDKPNQRWGSLEQDLPPAQGIGEFLHEDEMPAGSR
Specific function: Unknown
COG id: COG3537
COG function: function code G; Putative alpha-1,2-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60597; Mature: 60597
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVARWVLRGTALGNKCRLLDDKIDTLKESIRTADANKDGKADFTRYDTFSLWDTYRAVQ CCHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHH PLSSILEPDRLADVVLSMLSYAEEEWVDDKGNVRKGRLPEWTFKGNETGMMMGMHSTPVI HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEECCCCHHH HDVLSKGSLEKRMIDLGFTEAERKDVKERLVEAMITDARAATSQGVAWIKEYEEQGYVPA HHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCE QLHDTPPDSYGGHSPFKDSWTASYSLEYSMNDWAIAQSIKEVFGEEDPRYTEFANRSKNW EECCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCC QAQFDFGGKQYQGWFKARDYDGEFIDAGWVDPITGRAVGKDWRPDMFNWAFSESNGWQYS EEEECCCCCHHCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEE FSVQHDIHGLIDLMTRFDKTQNPEAERGDLFAARLDEYWSTYPDRNAGDNQFPVFNTGNV EECHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCC GQHVQGNEPDIHVPYLYNYVGQPWKGQAAIAAATNICYKNTADGICGNDDFGTLSAWFVF CCCCCCCCCCEECCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH RALGFYPVNASSGIYEIGTPLFESASIDVGNNQKFTVTAKNVSRENIFIQSARYNGKDFN HHHCCEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCCCCC RTYLTHDEIMYGGELEFVMGDKPNQRWGSLEQDLPPAQGIGEFLHEDEMPAGSR CEEEECCCEEECCEEEEEECCCCCCHHCCCHHCCCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MKVARWVLRGTALGNKCRLLDDKIDTLKESIRTADANKDGKADFTRYDTFSLWDTYRAVQ CCHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHHHHHHHHHH PLSSILEPDRLADVVLSMLSYAEEEWVDDKGNVRKGRLPEWTFKGNETGMMMGMHSTPVI HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEECCCCHHH HDVLSKGSLEKRMIDLGFTEAERKDVKERLVEAMITDARAATSQGVAWIKEYEEQGYVPA HHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCE QLHDTPPDSYGGHSPFKDSWTASYSLEYSMNDWAIAQSIKEVFGEEDPRYTEFANRSKNW EECCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCHHHHHCCCCCC QAQFDFGGKQYQGWFKARDYDGEFIDAGWVDPITGRAVGKDWRPDMFNWAFSESNGWQYS EEEECCCCCHHCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEE FSVQHDIHGLIDLMTRFDKTQNPEAERGDLFAARLDEYWSTYPDRNAGDNQFPVFNTGNV EECHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCCCCEEECCCC GQHVQGNEPDIHVPYLYNYVGQPWKGQAAIAAATNICYKNTADGICGNDDFGTLSAWFVF CCCCCCCCCCEECCHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH RALGFYPVNASSGIYEIGTPLFESASIDVGNNQKFTVTAKNVSRENIFIQSARYNGKDFN HHHCCEECCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCCCCCC RTYLTHDEIMYGGELEFVMGDKPNQRWGSLEQDLPPAQGIGEFLHEDEMPAGSR CEEEECCCEEECCEEEEEECCCCCCHHCCCHHCCCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA