| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
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The map label for this gene is sam [H]
Identifier: 156977781
GI number: 156977781
Start: 1718507
End: 1719442
Strand: Direct
Name: sam [H]
Synonym: VIBHAR_06569
Alternate gene names: 156977781
Gene position: 1718507-1719442 (Clockwise)
Preceding gene: 156977779
Following gene: 156977782
Centisome position: 77.97
GC content: 48.4
Gene sequence:
>936_bases TTGGCAAAGAATGAGGAGAGGAATAAAGTGAAAGTCACATCTGTCGGTGCAGCCATGCTGCTATTAATCGTTGGTAACCT AGTTGCGGTGCTCTCAGACGCTTTGATCAAAAGTGTCGGTAATGAAGTGCCGGTTTTTCAGTTTGTGTTTTACCGACAAT TGTCAGCTGTGATGATGTTATTACCCGTATATTTACTCACTAAACAAGCCCCATTAATGGAAGGCTTCAAGTGGCATGCA GTTCGTGCGCACGTTTGGTTAACTGGCGCGATTTTCATGGTGTTTGCCATCTCGTCGATGCCACTCGCCACCGCGAACGC GATCTTCTATGCCGCTCCTTTGATCATGTTGCCACTGGCGGCCATCTTCTTTGGAGAAAAGCTTTCCGGTCAATCCATTG CGGCGGCAGTGATGGGCTTTGCAGGCGTGCTTGTGATTATTCGTCCCGATCAGATTGATTGGGCGGCACTATCGGCATTG GTTGTCGCAGTCACATTGGCGATCAACAACCTGCTGATCCGCAAACTGCCAAAGAACCAATCTGTCCCACACACACTGTT GATGACTAACCTAGCCGGCATCCCGGTATCATTGTTGTTGGTGTTTATTGAAGGTGAAGCATGGGATTGGAGTTCCTTCC CTATTGCGGCAGGTTCAAGCTTGTTCATCATGATTTATGCAGCAACCTGTGTGTTGGCTTATCGCTCTATCGATAGCAAC AAAATTGCCAGCGCAGAATACAGCGGCTTGATTGGTGCAGTAATCGTTGGTTTGATTTGGTTTGGTGAAGTGCCAGATAT CTTTATGGCAATTGGCACAGTGATGATTGTGGTGCCTCTGGTTTGGTTGTCTAAGCGCGAACGCCGCAAGCAAAAACAAG CCCAAGCTGCAAAACTCGCTGAAGAGCAACAGCACCACCAAGCACCTGTGGCGTAG
Upstream 100 bases:
>100_bases ACAGTGGACCGCTCTAAGAGGTGGTAGTTTCATTATCTAAAAATCTCATACTTAAACCAATAAATATCATTTCACTTCAT CCTATGACATCACCTACTCT
Downstream 100 bases:
>100_bases ACGAAACCGAAACAAGGGGCAATTCACTGTCCCTTGTTGTTTGGTAACAACTGCTATAGTTAAAAACGTAAATAATAAAA CTAGGGCAGTACTGAATTCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MAKNEERNKVKVTSVGAAMLLLIVGNLVAVLSDALIKSVGNEVPVFQFVFYRQLSAVMMLLPVYLLTKQAPLMEGFKWHA VRAHVWLTGAIFMVFAISSMPLATANAIFYAAPLIMLPLAAIFFGEKLSGQSIAAAVMGFAGVLVIIRPDQIDWAALSAL VVAVTLAINNLLIRKLPKNQSVPHTLLMTNLAGIPVSLLLVFIEGEAWDWSSFPIAAGSSLFIMIYAATCVLAYRSIDSN KIASAEYSGLIGAVIVGLIWFGEVPDIFMAIGTVMIVVPLVWLSKRERRKQKQAQAAKLAEEQQHHQAPVA
Sequences:
>Translated_311_residues MAKNEERNKVKVTSVGAAMLLLIVGNLVAVLSDALIKSVGNEVPVFQFVFYRQLSAVMMLLPVYLLTKQAPLMEGFKWHA VRAHVWLTGAIFMVFAISSMPLATANAIFYAAPLIMLPLAAIFFGEKLSGQSIAAAVMGFAGVLVIIRPDQIDWAALSAL VVAVTLAINNLLIRKLPKNQSVPHTLLMTNLAGIPVSLLLVFIEGEAWDWSSFPIAAGSSLFIMIYAATCVLAYRSIDSN KIASAEYSGLIGAVIVGLIWFGEVPDIFMAIGTVMIVVPLVWLSKRERRKQKQAQAAKLAEEQQHHQAPVA >Mature_310_residues AKNEERNKVKVTSVGAAMLLLIVGNLVAVLSDALIKSVGNEVPVFQFVFYRQLSAVMMLLPVYLLTKQAPLMEGFKWHAV RAHVWLTGAIFMVFAISSMPLATANAIFYAAPLIMLPLAAIFFGEKLSGQSIAAAVMGFAGVLVIIRPDQIDWAALSALV VAVTLAINNLLIRKLPKNQSVPHTLLMTNLAGIPVSLLLVFIEGEAWDWSSFPIAAGSSLFIMIYAATCVLAYRSIDSNK IASAEYSGLIGAVIVGLIWFGEVPDIFMAIGTVMIVVPLVWLSKRERRKQKQAQAAKLAEEQQHHQAPVA
Specific function: Transports S-adenosylmethionine [H]
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 33744; Mature: 33613
Theoretical pI: Translated: 9.77; Mature: 9.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKNEERNKVKVTSVGAAMLLLIVGNLVAVLSDALIKSVGNEVPVFQFVFYRQLSAVMML CCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LPVYLLTKQAPLMEGFKWHAVRAHVWLTGAIFMVFAISSMPLATANAIFYAAPLIMLPLA HHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH AIFFGEKLSGQSIAAAVMGFAGVLVIIRPDQIDWAALSALVVAVTLAINNLLIRKLPKNQ HHHHCCCCCCHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC SVPHTLLMTNLAGIPVSLLLVFIEGEAWDWSSFPIAAGSSLFIMIYAATCVLAYRSIDSN CCCHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC KIASAEYSGLIGAVIVGLIWFGEVPDIFMAIGTVMIVVPLVWLSKRERRKQKQAQAAKLA CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEQQHHQAPVA HHHHHCCCCCC >Mature Secondary Structure AKNEERNKVKVTSVGAAMLLLIVGNLVAVLSDALIKSVGNEVPVFQFVFYRQLSAVMML CCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH LPVYLLTKQAPLMEGFKWHAVRAHVWLTGAIFMVFAISSMPLATANAIFYAAPLIMLPLA HHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH AIFFGEKLSGQSIAAAVMGFAGVLVIIRPDQIDWAALSALVVAVTLAINNLLIRKLPKNQ HHHHCCCCCCHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC SVPHTLLMTNLAGIPVSLLLVFIEGEAWDWSSFPIAAGSSLFIMIYAATCVLAYRSIDSN CCCHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC KIASAEYSGLIGAVIVGLIWFGEVPDIFMAIGTVMIVVPLVWLSKRERRKQKQAQAAKLA CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EEQQHHQAPVA HHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA