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The map label for this gene is tetD [H]

Identifier: 156977683

GI number: 156977683

Start: 1627791

End: 1628660

Strand: Reverse

Name: tetD [H]

Synonym: VIBHAR_06471

Alternate gene names: 156977683

Gene position: 1628660-1627791 (Counterclockwise)

Preceding gene: 156977685

Following gene: 156977682

Centisome position: 73.9

GC content: 47.01

Gene sequence:

>870_bases
ATGAGCCAGCAACAGGTTTCCAGAATCAATGATGTGTTGTTCTACATTCATCAAGACATCGGTAGAGAATTATCCGCCAA
AGAGCTGGCTGATGTAGCAGCGTATTCTGAGCAGCACTTCCACCGTATTTTTAAAGACGTTGTTGGGGAGTCAATTCACC
AATACGTTCGTCGCACCCGAATGGAATACGCCGCAAACCAGTTGATGTTTGATACCAAATCATCGGTATTGGAGATTGCC
AATAAGTGTGGTTTCAGCTCGGTATCTTCGTTCAGCCGTGCGTTCAAAGCCACGTTTGATATGTCTCCCGGCGCTTGGCG
TAAGCACGATTTGCAAGTCGCTGAGAAGCCATACCTCAAAGACCCAGAAGTGGCGGCGGGTTACCATCGAGTCGCGAAGC
GTACCTTACCGGAGCCAAAGATAGTTGAAGTGCCACAACGCTTTGCTGCTTACGTTCGTCATGAAGGCTACAACCGTTCT
ATTCGCAATGCTTGGTTGGTGCTAAAAGCTTGGGCGAACTCAGAGCATCGTGACTTTTCCACCCAATACGGTTTGCATCA
TTCTAATCCTGCTTGGGTTGAGTTAGATAAATGCCGCTACGTTGCTTGTATGGCAATTGATAAGCCGCTTAAGTATCGTG
GCGTTGTGAATCAAATGACCATTCCGGGTGGCTTACATGCGGTATTTCGACTTACTGGGGTGTATGGTGAATTGCTGCCG
CAGATCAGTATGGTATTAGAGAAATGGCTGCCCAATTCAGGCTTCAAACAACGCTCGACGCCAGCCTACGTGCACTACCA
TAAAAACCATTTCCTCAATCATGAAGAGGCGTTCGAGTTAGATTTCTATTTACCGATCAGCTTCTTTTAA

Upstream 100 bases:

>100_bases
GTTTTAGTTGAAAGATATTATATGGGAATTGTTAAACTTGGTGTGTCCATATATGCTGTTAAACATGTCCATTTATGCTA
TTTAAGTAAAACGCCCACTT

Downstream 100 bases:

>100_bases
CGAAAAATAGCGAAGCCATAAAGTAGGCTTTGAGCGGATGAGAAAGCCCACGATGTGCTTGTTTTATAGATACGTTTGTA
AATAGATGACAAACGGATGA

Product: hypothetical protein

Products: NA

Alternate protein names: ORFR [H]

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MSQQQVSRINDVLFYIHQDIGRELSAKELADVAAYSEQHFHRIFKDVVGESIHQYVRRTRMEYAANQLMFDTKSSVLEIA
NKCGFSSVSSFSRAFKATFDMSPGAWRKHDLQVAEKPYLKDPEVAAGYHRVAKRTLPEPKIVEVPQRFAAYVRHEGYNRS
IRNAWLVLKAWANSEHRDFSTQYGLHHSNPAWVELDKCRYVACMAIDKPLKYRGVVNQMTIPGGLHAVFRLTGVYGELLP
QISMVLEKWLPNSGFKQRSTPAYVHYHKNHFLNHEEAFELDFYLPISFF

Sequences:

>Translated_289_residues
MSQQQVSRINDVLFYIHQDIGRELSAKELADVAAYSEQHFHRIFKDVVGESIHQYVRRTRMEYAANQLMFDTKSSVLEIA
NKCGFSSVSSFSRAFKATFDMSPGAWRKHDLQVAEKPYLKDPEVAAGYHRVAKRTLPEPKIVEVPQRFAAYVRHEGYNRS
IRNAWLVLKAWANSEHRDFSTQYGLHHSNPAWVELDKCRYVACMAIDKPLKYRGVVNQMTIPGGLHAVFRLTGVYGELLP
QISMVLEKWLPNSGFKQRSTPAYVHYHKNHFLNHEEAFELDFYLPISFF
>Mature_288_residues
SQQQVSRINDVLFYIHQDIGRELSAKELADVAAYSEQHFHRIFKDVVGESIHQYVRRTRMEYAANQLMFDTKSSVLEIAN
KCGFSSVSSFSRAFKATFDMSPGAWRKHDLQVAEKPYLKDPEVAAGYHRVAKRTLPEPKIVEVPQRFAAYVRHEGYNRSI
RNAWLVLKAWANSEHRDFSTQYGLHHSNPAWVELDKCRYVACMAIDKPLKYRGVVNQMTIPGGLHAVFRLTGVYGELLPQ
ISMVLEKWLPNSGFKQRSTPAYVHYHKNHFLNHEEAFELDFYLPISFF

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=269, Percent_Identity=24.907063197026, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081928, Length=104, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33503; Mature: 33371

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQQQVSRINDVLFYIHQDIGRELSAKELADVAAYSEQHFHRIFKDVVGESIHQYVRRTR
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MEYAANQLMFDTKSSVLEIANKCGFSSVSSFSRAFKATFDMSPGAWRKHDLQVAEKPYLK
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHCCHHHCCCCCC
DPEVAAGYHRVAKRTLPEPKIVEVPQRFAAYVRHEGYNRSIRNAWLVLKAWANSEHRDFS
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHEEEEEECCCCCCCCCH
TQYGLHHSNPAWVELDKCRYVACMAIDKPLKYRGVVNQMTIPGGLHAVFRLTGVYGELLP
HHCCCCCCCCCEEEECCHHEEEEEECCCCHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHH
QISMVLEKWLPNSGFKQRSTPAYVHYHKNHFLNHEEAFELDFYLPISFF
HHHHHHHHHCCCCCCCCCCCCEEEEECCHHCCCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
SQQQVSRINDVLFYIHQDIGRELSAKELADVAAYSEQHFHRIFKDVVGESIHQYVRRTR
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MEYAANQLMFDTKSSVLEIANKCGFSSVSSFSRAFKATFDMSPGAWRKHDLQVAEKPYLK
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHCCHHHCCCCCC
DPEVAAGYHRVAKRTLPEPKIVEVPQRFAAYVRHEGYNRSIRNAWLVLKAWANSEHRDFS
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHEEEEEECCCCCCCCCH
TQYGLHHSNPAWVELDKCRYVACMAIDKPLKYRGVVNQMTIPGGLHAVFRLTGVYGELLP
HHCCCCCCCCCEEEECCHHEEEEEECCCCHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHH
QISMVLEKWLPNSGFKQRSTPAYVHYHKNHFLNHEEAFELDFYLPISFF
HHHHHHHHHCCCCCCCCCCCCEEEEECCHHCCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6094471; 6094472 [H]