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The map label for this gene is ykfC [H]

Identifier: 156977670

GI number: 156977670

Start: 1615355

End: 1615963

Strand: Direct

Name: ykfC [H]

Synonym: VIBHAR_06458

Alternate gene names: 156977670

Gene position: 1615355-1615963 (Clockwise)

Preceding gene: 156977669

Following gene: 156977671

Centisome position: 73.29

GC content: 45.32

Gene sequence:

>609_bases
TTGCAAGAGAATTTGAAGAACTTTATTCAAGGAGAAACGCAAATGATGATTTCAAAAGAGATTAGTGCCTCTCCTGACAG
TGCTCAGTGGCAATCCATAAATTGGAAAGCCGTTGAATCCCATGTTTTAAAGCTTCAGATGCGTATTGCAAAGGCAACAC
GAGAAGGTAAACACGGCAAAGCGAAAGCATTGCAGTGGATACTGACTCACTCGCGCTCAGCAAAACTTCTTGCTGTTAAG
CGGGTATCACAAAATAAAGGCAGTAAAACGCCTGGAATTGACGGCGTTATCTGGAATACAGATACGCGCCGCATGAAAGC
AGTCAATCAATTGAGCAGAAAAGCTTATCTAGCCAAACCGCTCAAGCGTATCTACATCCCCAAGAAAAACGGCAAACTCA
GACCACTGGGTATCCCCTGTATGGTCGATAGAGCGCAGCAAGCGCTTCATCTTCTTGCACTAGAGCCAGTATCAGAAACA
CTTGCCGATCCTAACAGCTATGGATTTAGACCAAATCGAAGCACTGCTGATGCTATCGCGCAGTGCTTCAAGTGTCTGGC
ACTAAAGAAATCAGCTCAGTGGGTACTTGAGGGAGACATCAAAGCCTGA

Upstream 100 bases:

>100_bases
CAGGTAGAGGAGGTTGGAAAAAGCGAAGGCTGCATTGTAACGATACAGATACAGATCCTTATCTGGCACGAAAGTGGGCT
GACTTCCGACTGGTCTTCCG

Downstream 100 bases:

>100_bases
GGGCTCCCCACAACTAGCATAGAAGAATCATGTAGATAGCGTGAAAAGTAGGCAGATTCATTTTGATCGGCGATTATAGC
ATCAATTGAAAAGATATGAC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MQENLKNFIQGETQMMISKEISASPDSAQWQSINWKAVESHVLKLQMRIAKATREGKHGKAKALQWILTHSRSAKLLAVK
RVSQNKGSKTPGIDGVIWNTDTRRMKAVNQLSRKAYLAKPLKRIYIPKKNGKLRPLGIPCMVDRAQQALHLLALEPVSET
LADPNSYGFRPNRSTADAIAQCFKCLALKKSAQWVLEGDIKA

Sequences:

>Translated_202_residues
MQENLKNFIQGETQMMISKEISASPDSAQWQSINWKAVESHVLKLQMRIAKATREGKHGKAKALQWILTHSRSAKLLAVK
RVSQNKGSKTPGIDGVIWNTDTRRMKAVNQLSRKAYLAKPLKRIYIPKKNGKLRPLGIPCMVDRAQQALHLLALEPVSET
LADPNSYGFRPNRSTADAIAQCFKCLALKKSAQWVLEGDIKA
>Mature_202_residues
MQENLKNFIQGETQMMISKEISASPDSAQWQSINWKAVESHVLKLQMRIAKATREGKHGKAKALQWILTHSRSAKLLAVK
RVSQNKGSKTPGIDGVIWNTDTRRMKAVNQLSRKAYLAKPLKRIYIPKKNGKLRPLGIPCMVDRAQQALHLLALEPVSET
LADPNSYGFRPNRSTADAIAQCFKCLALKKSAQWVLEGDIKA

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 22629; Mature: 22629

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQENLKNFIQGETQMMISKEISASPDSAQWQSINWKAVESHVLKLQMRIAKATREGKHGK
CCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
AKALQWILTHSRSAKLLAVKRVSQNKGSKTPGIDGVIWNTDTRRMKAVNQLSRKAYLAKP
HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH
LKRIYIPKKNGKLRPLGIPCMVDRAQQALHLLALEPVSETLADPNSYGFRPNRSTADAIA
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHH
QCFKCLALKKSAQWVLEGDIKA
HHHHHHHHHHCCCEEEECCCCC
>Mature Secondary Structure
MQENLKNFIQGETQMMISKEISASPDSAQWQSINWKAVESHVLKLQMRIAKATREGKHGK
CCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH
AKALQWILTHSRSAKLLAVKRVSQNKGSKTPGIDGVIWNTDTRRMKAVNQLSRKAYLAKP
HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHH
LKRIYIPKKNGKLRPLGIPCMVDRAQQALHLLALEPVSETLADPNSYGFRPNRSTADAIA
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHH
QCFKCLALKKSAQWVLEGDIKA
HHHHHHHHHHCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]