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The map label for this gene is hlyD [H]

Identifier: 156977666

GI number: 156977666

Start: 1611002

End: 1612375

Strand: Reverse

Name: hlyD [H]

Synonym: VIBHAR_06454

Alternate gene names: 156977666

Gene position: 1612375-1611002 (Counterclockwise)

Preceding gene: 156977667

Following gene: 156977665

Centisome position: 73.16

GC content: 52.26

Gene sequence:

>1374_bases
ATGTTCCCAATCATAGCTAAGGTCATTCGCGCCAAACAGGGCCAAACACACAGGAACCGACGCAATGCGCACGACTATGA
ATTTTTGCCGGCTTATCTTGAAATCATCGAAAAACCGCCTTCCCCTTGGTCGCGTCGGATCGCATTTACCATCGCGACCT
TTTTGCTCCTTGTGCTGATTTGGTCGATTGTCGGTCGTTTAGACATCCACGCGAGTGCCCAAGGGAAAGTGATGGTTTCC
AGTCACAGTAAAGTCATCCAGGCACTTGAGCAGGGCGAAGTCGTCGAAATTAACGTCCGCAATGGCCAGTTTGTGCGTCA
AGGAGATGTGTTGATCCAGCTCAATCCGGCCGGGGCCAACGCTGAATCGACACGACTGTCGGAGCAACACGTACGCTATC
AACTGAACAAAGCGCGCTTACTCGCACTCTTGTCGCCCAACCCAATGCAGAGTTTCACGCCGCCGCGTGAAGCCACGCCT
GCTCAAATTACGGCTAGCCAGCAACATCTGCAAAGTGAGTACCAAGAAACCCAACAGATGCTTGAGCGTCTCAACGCAGA
GCGAGATGTCAATCGCGCTGAGCTTGAAGCGAACCAACAAGGGATACAAGCCCTGAACAAGCTAAAGCAAAATATCGTCA
CGCGACTTCATGCTCGTCGCGCCCTGATGGAATCCAACGCCATTGCGCGTGTGGATTTGCTCGAACAAGAGAAGGAATGG
CTCGACGTCGAGCGTGACATCAGCAATATGCAAGCTCAGCAGGCAATATTGAAAGCTAAAGCCAGCAGCCTAGTGGAACA
AAGAGAGACGTTGTTGGCGCAAAAACGGCTCGAGTATTACGATGAACTCAACCAAATTGATGGCCAAATCGCTGAAATTG
AACAAGAGCTGATCAAAGCGAAAGAACGTCAACGGATCCAAGCTTTGCGCTCTCCAGTAGATGGCGTCGTTCAGCAGTTG
GCCATCCATACACTGGGTGGCGTTGCTTCCCCTGCTGAACCTTTGATGGTGATCGTGCCGCAAAATGCCGACTTGGAGGC
GGAGGTCAACATCTTAAACAAAGACGTTGGCTTTGTGATGGCGGGGCAACCGGTGGAAATTAAAATCGACAGCTTTCCGT
TTACGAAATACGGCACTATCCCCGGGGAGCTGTTGTATGTGTCTAAAGACGCGGTTGAGGATGAGCGACTTGGCCCGGTG
TTCCCCGCTCGGATCCGCCTAGAGCGCGATCAGATATTGGTCGATGACACCTGGGTTACCTTAGGCGCGGGAATGAGCCT
CAACGCGGAAATCAAAACGGGCTCGCGGCGGATCATCGAATACCTGCTTAGCCCACTTCAGCAGTATCAGTCGGAAGCGA
TGAGGGAACGCTAA

Upstream 100 bases:

>100_bases
GTAACCATCAACACTTGTTAGCCCAACAAGGCTGCTACGCCCGGTTATGGCATATCCAGCAAAACAAACAAGTGGAATCT
GTAGGTGAAGAGGTGTTGCC

Downstream 100 bases:

>100_bases
TGGACAAAAACGTCGCTTCAGGCCCGAGTGGTTTGCGCTGCTTAGCTTACATCGCCAAGCACTTCGATAAGTCCGTTGAA
CTGACTCATTTGCAGCATAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MFPIIAKVIRAKQGQTHRNRRNAHDYEFLPAYLEIIEKPPSPWSRRIAFTIATFLLLVLIWSIVGRLDIHASAQGKVMVS
SHSKVIQALEQGEVVEINVRNGQFVRQGDVLIQLNPAGANAESTRLSEQHVRYQLNKARLLALLSPNPMQSFTPPREATP
AQITASQQHLQSEYQETQQMLERLNAERDVNRAELEANQQGIQALNKLKQNIVTRLHARRALMESNAIARVDLLEQEKEW
LDVERDISNMQAQQAILKAKASSLVEQRETLLAQKRLEYYDELNQIDGQIAEIEQELIKAKERQRIQALRSPVDGVVQQL
AIHTLGGVASPAEPLMVIVPQNADLEAEVNILNKDVGFVMAGQPVEIKIDSFPFTKYGTIPGELLYVSKDAVEDERLGPV
FPARIRLERDQILVDDTWVTLGAGMSLNAEIKTGSRRIIEYLLSPLQQYQSEAMRER

Sequences:

>Translated_457_residues
MFPIIAKVIRAKQGQTHRNRRNAHDYEFLPAYLEIIEKPPSPWSRRIAFTIATFLLLVLIWSIVGRLDIHASAQGKVMVS
SHSKVIQALEQGEVVEINVRNGQFVRQGDVLIQLNPAGANAESTRLSEQHVRYQLNKARLLALLSPNPMQSFTPPREATP
AQITASQQHLQSEYQETQQMLERLNAERDVNRAELEANQQGIQALNKLKQNIVTRLHARRALMESNAIARVDLLEQEKEW
LDVERDISNMQAQQAILKAKASSLVEQRETLLAQKRLEYYDELNQIDGQIAEIEQELIKAKERQRIQALRSPVDGVVQQL
AIHTLGGVASPAEPLMVIVPQNADLEAEVNILNKDVGFVMAGQPVEIKIDSFPFTKYGTIPGELLYVSKDAVEDERLGPV
FPARIRLERDQILVDDTWVTLGAGMSLNAEIKTGSRRIIEYLLSPLQQYQSEAMRER
>Mature_457_residues
MFPIIAKVIRAKQGQTHRNRRNAHDYEFLPAYLEIIEKPPSPWSRRIAFTIATFLLLVLIWSIVGRLDIHASAQGKVMVS
SHSKVIQALEQGEVVEINVRNGQFVRQGDVLIQLNPAGANAESTRLSEQHVRYQLNKARLLALLSPNPMQSFTPPREATP
AQITASQQHLQSEYQETQQMLERLNAERDVNRAELEANQQGIQALNKLKQNIVTRLHARRALMESNAIARVDLLEQEKEW
LDVERDISNMQAQQAILKAKASSLVEQRETLLAQKRLEYYDELNQIDGQIAEIEQELIKAKERQRIQALRSPVDGVVQQL
AIHTLGGVASPAEPLMVIVPQNADLEAEVNILNKDVGFVMAGQPVEIKIDSFPFTKYGTIPGELLYVSKDAVEDERLGPV
FPARIRLERDQILVDDTWVTLGAGMSLNAEIKTGSRRIIEYLLSPLQQYQSEAMRER

Specific function: Involved in the transport of hemolysin A [H]

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003997
- InterPro:   IPR006143
- InterPro:   IPR006144
- InterPro:   IPR010129 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 51687; Mature: 51687

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS00543 HLYD_FAMILY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPIIAKVIRAKQGQTHRNRRNAHDYEFLPAYLEIIEKPPSPWSRRIAFTIATFLLLVLI
CCHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
WSIVGRLDIHASAQGKVMVSSHSKVIQALEQGEVVEINVRNGQFVRQGDVLIQLNPAGAN
HHHHHCCCEECCCCCCEEECCHHHHHHHHHCCCEEEEEECCCCEEEECCEEEEECCCCCC
AESTRLSEQHVRYQLNKARLLALLSPNPMQSFTPPREATPAQITASQQHLQSEYQETQQM
CHHHHHHHHHHHHHHCHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LERLNAERDVNRAELEANQQGIQALNKLKQNIVTRLHARRALMESNAIARVDLLEQEKEW
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LDVERDISNMQAQQAILKAKASSLVEQRETLLAQKRLEYYDELNQIDGQIAEIEQELIKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KERQRIQALRSPVDGVVQQLAIHTLGGVASPAEPLMVIVPQNADLEAEVNILNKDVGFVM
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEHEEEECCCCEEE
AGQPVEIKIDSFPFTKYGTIPGELLYVSKDAVEDERLGPVFPARIRLERDQILVDDTWVT
CCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHEEEECCEEEEECCEEE
LGAGMSLNAEIKTGSRRIIEYLLSPLQQYQSEAMRER
ECCCCEECCEECCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFPIIAKVIRAKQGQTHRNRRNAHDYEFLPAYLEIIEKPPSPWSRRIAFTIATFLLLVLI
CCHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
WSIVGRLDIHASAQGKVMVSSHSKVIQALEQGEVVEINVRNGQFVRQGDVLIQLNPAGAN
HHHHHCCCEECCCCCCEEECCHHHHHHHHHCCCEEEEEECCCCEEEECCEEEEECCCCCC
AESTRLSEQHVRYQLNKARLLALLSPNPMQSFTPPREATPAQITASQQHLQSEYQETQQM
CHHHHHHHHHHHHHHCHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LERLNAERDVNRAELEANQQGIQALNKLKQNIVTRLHARRALMESNAIARVDLLEQEKEW
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
LDVERDISNMQAQQAILKAKASSLVEQRETLLAQKRLEYYDELNQIDGQIAEIEQELIKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
KERQRIQALRSPVDGVVQQLAIHTLGGVASPAEPLMVIVPQNADLEAEVNILNKDVGFVM
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEHEEEECCCCEEE
AGQPVEIKIDSFPFTKYGTIPGELLYVSKDAVEDERLGPVFPARIRLERDQILVDDTWVT
CCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCHHEEEECCEEEEECCEEE
LGAGMSLNAEIKTGSRRIIEYLLSPLQQYQSEAMRER
ECCCCEECCEECCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3891743; 1495479 [H]