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The map label for this gene is cspA [H]

Identifier: 156977630

GI number: 156977630

Start: 1581298

End: 1581510

Strand: Direct

Name: cspA [H]

Synonym: VIBHAR_06418

Alternate gene names: 156977630

Gene position: 1581298-1581510 (Clockwise)

Preceding gene: 156977627

Following gene: 156977631

Centisome position: 71.75

GC content: 40.38

Gene sequence:

>213_bases
ATGTCTGGTAAAGTAACTGGTTCAGTAAAATGGTTCAACGAAACTAAAGGTTTTGGTTTCCTAACTCAAGACAACGGCGG
CCAAGATGTATTCGTACACTTCAACGCTATCGTTGCTGACGGTTTCAAAACTTTGACTGAAGGTCAGAAAGTAAGCTTCA
ATGTAGAAGACGGTAAAAAAGGTCCTCAAGCGACTGAAGTTACTCCTCTATAA

Upstream 100 bases:

>100_bases
GTTCAGACTCCTGCGTAAAACTTCCTCTTGATTGCACATTCAATAGCTTAAAAAAGATCCACCACAATTCGTATATTATT
GTTTAATTTCAGAGGTTTTT

Downstream 100 bases:

>100_bases
GATAGCTTTTCTTGGTGCAGCATTTCCTCGCTGCACCAAACTCTCTACCCCTTCAAAAATTCCTCACACTTAACAACCCG
CAAGTATTCTTGCTCGGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSGKVTGSVKWFNETKGFGFLTQDNGGQDVFVHFNAIVADGFKTLTEGQKVSFNVEDGKKGPQATEVTPL

Sequences:

>Translated_70_residues
MSGKVTGSVKWFNETKGFGFLTQDNGGQDVFVHFNAIVADGFKTLTEGQKVSFNVEDGKKGPQATEVTPL
>Mature_69_residues
SGKVTGSVKWFNETKGFGFLTQDNGGQDVFVHFNAIVADGFKTLTEGQKVSFNVEDGKKGPQATEVTPL

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=67.1428571428571, Blast_Score=98, Evalue=1e-22,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=61.1940298507463, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1786841, Length=67, Percent_Identity=59.7014925373134, Blast_Score=89, Evalue=4e-20,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=58.5714285714286, Blast_Score=89, Evalue=6e-20,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=60, Blast_Score=88, Evalue=1e-19,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=59.7014925373134, Blast_Score=86, Evalue=5e-19,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=48.4375, Blast_Score=75, Evalue=7e-16,
Organism=Drosophila melanogaster, GI24658520, Length=62, Percent_Identity=46.7741935483871, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7538; Mature: 7407

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKVTGSVKWFNETKGFGFLTQDNGGQDVFVHFNAIVADGFKTLTEGQKVSFNVEDGKK
CCCCEEEEEEEECCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCC
GPQATEVTPL
CCCCCEECCC
>Mature Secondary Structure 
SGKVTGSVKWFNETKGFGFLTQDNGGQDVFVHFNAIVADGFKTLTEGQKVSFNVEDGKK
CCCEEEEEEEECCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCEEEEECCCCCC
GPQATEVTPL
CCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]