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The map label for this gene is uup [H]

Identifier: 156977601

GI number: 156977601

Start: 1558750

End: 1560060

Strand: Reverse

Name: uup [H]

Synonym: VIBHAR_06389

Alternate gene names: 156977601

Gene position: 1560060-1558750 (Counterclockwise)

Preceding gene: 156977603

Following gene: 156977600

Centisome position: 70.78

GC content: 48.97

Gene sequence:

>1311_bases
ATGCCAGTTTTACAGGCTTACAATATCAGTCATCAATTTGGTAACGGCGAAACACTGTTTCAGCAAATCTCATGTTCTAT
GACCAAACGTCGTGTTGGGTTAGTCGGACGCAACGGTGTCGGAAAATCGGTGTTTGCATCGATACTTAGTGGTGAGCAAG
CCCCGACCAGCGGTACAGTAACCTTACCAAGGTCCTTTGCGGTGTATCGCCAGCAACCATCTCACTTGTTGGGGGGAGAG
CTGTCGATTGCCCAGTTTTTAGCAAAGGACAAAGTGCTAAGAGCGCTCAAGCAGATCGAAATGGGCGATTGCTCTGAATA
TTTGTTTGAGGTAGTGGGCGAACAATGGGGTTTGCCGATTCAACTTGCTAAGCAGCTTACAGATATGGGCTTACCGCCCC
TGCCTGATTTTCCGTGCGCACTATTAAGCGCCGGACAGCTAGCGCGTTTGCAACTGTGGCAGTTGTTCGACAGCGAAGTG
GAATTGCTGATCCTTGATGAACCGTCGAACCACCTCGATAAGCACGCCAAGCAGTGGTTGATTCATTCGATGCGCAGTTT
CTCAGGCGCGATTCTGCTCATCAGTCACGACCGAGAATTGCTGCGCGAGATGGAAGAAATCTGGGAGCTATCCGGTTTAG
GTTTGCAAGTGTTTGGCGGCAATTACGATGTGTATGCCGAGCAAAAGCGAACAGAACTGCAAGCGGTGGAACGTCAATTA
GCCAGCGTCGAAAAGCAACAGAAATACTTGGAAGAACAAGCTCAGCGCAATCGCGAGAGAGCGGAGCAAAGAGCGGCTCA
GGGTATCAAGCTGAGAAAGGATGGCAGTCAGCCAAAGATCTTACTTGATGGAATGAAAGACAAAGCCACAGCCCGAGCTG
CCAGTCGCAATAAGAATGAGCAACTTCGCCAAGCGCATCTACAGGAGAAAGAGCAAAGCTTGCGAGCGCGTAAAGAGCAA
ATCAAAGGGCAAAAACTGTATTTGGCAGACAGTCAAAGCCGCTCACGAAAAGTCGTATCGTTATTAGAAGCCGTGTTGCC
ATTTGGGACTGCTCAACCTATTACTGCGCAAGTTCATGCGAATGATAAGGTACATTTGCTGGGCAAAAATGGATGCGGTA
AATCGACCTTACTGAAAACCCTGTTGGGCGAGTTCTCATTGCAAAGTGGTGAGCAGCAAGTCAATACGCCGCTTTATTAC
CTCGACCAGCACTTTGGTGTGATACAACCCGAACTCTCCATGTTGGAAAACCTGACGCAACATTGTGAGGGGATGAAAGA
GAGCGATGCCAGAACATTACTATACCCGTGA

Upstream 100 bases:

>100_bases
CTGTTTGAATCGTTTTTATGGGCGAGTGTCATTGCATCGATCTCATCTCTAGATTTATCTCAAGCTACGGCTGTTGTCCC
TGTCATACAGTAGGCAAATT

Downstream 100 bases:

>100_bases
TCATTGAAGATGCTTGATTTCTCATTAATTCAGGATCATGCTACGCACCATGAAAATTGTACTGACTCCTGAACAAAAGC
AGCAACTCGAACAGATGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MPVLQAYNISHQFGNGETLFQQISCSMTKRRVGLVGRNGVGKSVFASILSGEQAPTSGTVTLPRSFAVYRQQPSHLLGGE
LSIAQFLAKDKVLRALKQIEMGDCSEYLFEVVGEQWGLPIQLAKQLTDMGLPPLPDFPCALLSAGQLARLQLWQLFDSEV
ELLILDEPSNHLDKHAKQWLIHSMRSFSGAILLISHDRELLREMEEIWELSGLGLQVFGGNYDVYAEQKRTELQAVERQL
ASVEKQQKYLEEQAQRNRERAEQRAAQGIKLRKDGSQPKILLDGMKDKATARAASRNKNEQLRQAHLQEKEQSLRARKEQ
IKGQKLYLADSQSRSRKVVSLLEAVLPFGTAQPITAQVHANDKVHLLGKNGCGKSTLLKTLLGEFSLQSGEQQVNTPLYY
LDQHFGVIQPELSMLENLTQHCEGMKESDARTLLYP

Sequences:

>Translated_436_residues
MPVLQAYNISHQFGNGETLFQQISCSMTKRRVGLVGRNGVGKSVFASILSGEQAPTSGTVTLPRSFAVYRQQPSHLLGGE
LSIAQFLAKDKVLRALKQIEMGDCSEYLFEVVGEQWGLPIQLAKQLTDMGLPPLPDFPCALLSAGQLARLQLWQLFDSEV
ELLILDEPSNHLDKHAKQWLIHSMRSFSGAILLISHDRELLREMEEIWELSGLGLQVFGGNYDVYAEQKRTELQAVERQL
ASVEKQQKYLEEQAQRNRERAEQRAAQGIKLRKDGSQPKILLDGMKDKATARAASRNKNEQLRQAHLQEKEQSLRARKEQ
IKGQKLYLADSQSRSRKVVSLLEAVLPFGTAQPITAQVHANDKVHLLGKNGCGKSTLLKTLLGEFSLQSGEQQVNTPLYY
LDQHFGVIQPELSMLENLTQHCEGMKESDARTLLYP
>Mature_435_residues
PVLQAYNISHQFGNGETLFQQISCSMTKRRVGLVGRNGVGKSVFASILSGEQAPTSGTVTLPRSFAVYRQQPSHLLGGEL
SIAQFLAKDKVLRALKQIEMGDCSEYLFEVVGEQWGLPIQLAKQLTDMGLPPLPDFPCALLSAGQLARLQLWQLFDSEVE
LLILDEPSNHLDKHAKQWLIHSMRSFSGAILLISHDRELLREMEEIWELSGLGLQVFGGNYDVYAEQKRTELQAVERQLA
SVEKQQKYLEEQAQRNRERAEQRAAQGIKLRKDGSQPKILLDGMKDKATARAASRNKNEQLRQAHLQEKEQSLRARKEQI
KGQKLYLADSQSRSRKVVSLLEAVLPFGTAQPITAQVHANDKVHLLGKNGCGKSTLLKTLLGEFSLQSGEQQVNTPLYYL
DQHFGVIQPELSMLENLTQHCEGMKESDARTLLYP

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=228, Percent_Identity=27.6315789473684, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI27881506, Length=245, Percent_Identity=28.1632653061224, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI10947137, Length=245, Percent_Identity=28.1632653061224, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI69354671, Length=247, Percent_Identity=27.1255060728745, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI10947135, Length=247, Percent_Identity=27.1255060728745, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1787182, Length=414, Percent_Identity=31.1594202898551, Blast_Score=138, Evalue=7e-34,
Organism=Escherichia coli, GI1787041, Length=467, Percent_Identity=26.5524625267666, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789751, Length=401, Percent_Identity=27.1820448877805, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI2367384, Length=399, Percent_Identity=25.062656641604, Blast_Score=76, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17559834, Length=430, Percent_Identity=24.6511627906977, Blast_Score=95, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17553372, Length=438, Percent_Identity=26.4840182648402, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17555318, Length=249, Percent_Identity=26.9076305220884, Blast_Score=75, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6320874, Length=208, Percent_Identity=28.3653846153846, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24641342, Length=397, Percent_Identity=28.463476070529, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24666836, Length=395, Percent_Identity=24.8101265822785, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24642252, Length=411, Percent_Identity=23.8442822384428, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI18859989, Length=411, Percent_Identity=23.8442822384428, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 48939; Mature: 48808

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVLQAYNISHQFGNGETLFQQISCSMTKRRVGLVGRNGVGKSVFASILSGEQAPTSGTV
CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCEE
TLPRSFAVYRQQPSHLLGGELSIAQFLAKDKVLRALKQIEMGDCSEYLFEVVGEQWGLPI
ECCCHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
QLAKQLTDMGLPPLPDFPCALLSAGQLARLQLWQLFDSEVELLILDEPSNHLDKHAKQWL
HHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH
IHSMRSFSGAILLISHDRELLREMEEIWELSGLGLQVFGGNYDVYAEQKRTELQAVERQL
HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEHHHHHHHHHHHHHHH
ASVEKQQKYLEEQAQRNRERAEQRAAQGIKLRKDGSQPKILLDGMKDKATARAASRNKNE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEECCCCHHHHHHHHHCCHHH
QLRQAHLQEKEQSLRARKEQIKGQKLYLADSQSRSRKVVSLLEAVLPFGTAQPITAQVHA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEC
NDKVHLLGKNGCGKSTLLKTLLGEFSLQSGEQQVNTPLYYLDQHFGVIQPELSMLENLTQ
CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCHHHHHHHHHHH
HCEGMKESDARTLLYP
HHCCCCCCCCCEECCC
>Mature Secondary Structure 
PVLQAYNISHQFGNGETLFQQISCSMTKRRVGLVGRNGVGKSVFASILSGEQAPTSGTV
CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCEE
TLPRSFAVYRQQPSHLLGGELSIAQFLAKDKVLRALKQIEMGDCSEYLFEVVGEQWGLPI
ECCCHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHH
QLAKQLTDMGLPPLPDFPCALLSAGQLARLQLWQLFDSEVELLILDEPSNHLDKHAKQWL
HHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH
IHSMRSFSGAILLISHDRELLREMEEIWELSGLGLQVFGGNYDVYAEQKRTELQAVERQL
HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEEHHHHHHHHHHHHHHH
ASVEKQQKYLEEQAQRNRERAEQRAAQGIKLRKDGSQPKILLDGMKDKATARAASRNKNE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEECCCCHHHHHHHHHCCHHH
QLRQAHLQEKEQSLRARKEQIKGQKLYLADSQSRSRKVVSLLEAVLPFGTAQPITAQVHA
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEC
NDKVHLLGKNGCGKSTLLKTLLGEFSLQSGEQQVNTPLYYLDQHFGVIQPELSMLENLTQ
CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCCHHHHHHHHHHH
HCEGMKESDARTLLYP
HHCCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Endonuclease; Excision [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 9139905; 7751275 [H]