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The map label for this gene is ykfC [H]

Identifier: 156977591

GI number: 156977591

Start: 1550823

End: 1551926

Strand: Reverse

Name: ykfC [H]

Synonym: VIBHAR_06379

Alternate gene names: 156977591

Gene position: 1551926-1550823 (Counterclockwise)

Preceding gene: 156977592

Following gene: 156977589

Centisome position: 70.41

GC content: 48.37

Gene sequence:

>1104_bases
GTGGGAATCCCCAAACCGAGTGGTGGCGTCAGACAACTAGGTATCCCAACAGTGCTCGATAGAATTGTCCAACAGGCAAT
CACCTCAGTACTGTCAGATATCTATGAAGCTAAGTTCTCCAATAGCAGTTACGGATTTAGACCCAACCGCAGTGCACATC
ATGCGCTAGCGGCAGCCAGTCGCTACATCCGAGAGGGGCGAGGTTATGTAGTAGATATCGACCTAGCGAAATACTTCGAT
ACCGTTAATCACGATAGACTGATGCACAGACTGTCAGAGGATATCGCGGATAAACGAGTGTTGAAGCTCATCAGGTCATA
TCTACAGGCAGGCATAATGCGAAACGGTTTAGTCGAACAGAGACAACGAGGGACACCACAGGGTGGTCCATTATCTCCGT
TGCTATCCAATATCGTATTAGATGAACTGGATAAAGAGCTAGAGCGTAGAGGGCATAAGTTCTGTCGATATGCAGACGAC
TGTCAAATCTATGTTGGTAGTGAGGAAGCCGCTTATCGAGTGAAAGAGTCGATAACGGAGTACTTGGAGCAAAAACTGAA
ACTCACGGTAAACCGAGAGAAAAGTGCAGCAACAAGAGTGACAGAGCGAACTTACCTAAGCCACCGCTTCGGGATAGATG
GGACAATCCATATATCGAAGCCAGCGCAAACTCAAATGAAGACGCGAGTGCGGCAGATAACGAAGCGAAACCGAGGTCGA
GAGTTAAAGGTGGTAATCGCCGAGTTAACTCAATACCTAAGAGGTTGGCAAGACTACTTCAAACTCGCCATACGGAAGAG
CAGCATGAAGCGCTTGGACGAATGGATACGGCGACGGCTAAGATGCTATCGACTTAAGCAACGCAAACACAGATACGGCA
TAGCGACATGGTTACAGCGACAAGGTGTAACAGAGCGTAATGCGTGGAAGTTAGCGATGTCAGATAAAGGTTGGTGGCGG
CTAGCATTAACGCCCCAGACAAATCACGCTATGCCAACAAAATGGTTCGAGGAGTTGGGTCTGTACTCGTTGCGAGATGG
GTATGAGTCACTAAAAGTATATTCGGAACCGCCGTATGCGACCCACGCTTGTACGGTGGTGTGA

Upstream 100 bases:

>100_bases
TATGTTGTTTAATAATCACTCAATTTTCGGGTAATTTGGTTTTCTGTCCGAATTACGCAACAAAGCCGATGGAAGCTACC
GACCTCAACCCGTTCTTGGT

Downstream 100 bases:

>100_bases
GAGGACGGAGGCCGTGAGGCCTCCTCCTACTCGATTTATTGATTGTTCTCGAGTTTTTCGCGGTATTGGTTTTGAAGAAT
GTACATGCGTTTTACATCGC

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MGIPKPSGGVRQLGIPTVLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALAAASRYIREGRGYVVDIDLAKYFD
TVNHDRLMHRLSEDIADKRVLKLIRSYLQAGIMRNGLVEQRQRGTPQGGPLSPLLSNIVLDELDKELERRGHKFCRYADD
CQIYVGSEEAAYRVKESITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRNRGR
ELKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQGVTERNAWKLAMSDKGWWR
LALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV

Sequences:

>Translated_367_residues
MGIPKPSGGVRQLGIPTVLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALAAASRYIREGRGYVVDIDLAKYFD
TVNHDRLMHRLSEDIADKRVLKLIRSYLQAGIMRNGLVEQRQRGTPQGGPLSPLLSNIVLDELDKELERRGHKFCRYADD
CQIYVGSEEAAYRVKESITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRNRGR
ELKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQGVTERNAWKLAMSDKGWWR
LALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV
>Mature_366_residues
GIPKPSGGVRQLGIPTVLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALAAASRYIREGRGYVVDIDLAKYFDT
VNHDRLMHRLSEDIADKRVLKLIRSYLQAGIMRNGLVEQRQRGTPQGGPLSPLLSNIVLDELDKELERRGHKFCRYADDC
QIYVGSEEAAYRVKESITEYLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRNRGRE
LKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQRQGVTERNAWKLAMSDKGWWRL
ALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYATHACTVV

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=149, Percent_Identity=39.5973154362416, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6226520, Length=298, Percent_Identity=29.8657718120805, Blast_Score=108, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 42678; Mature: 42546

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIPKPSGGVRQLGIPTVLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALAAAS
CCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
RYIREGRGYVVDIDLAKYFDTVNHDRLMHRLSEDIADKRVLKLIRSYLQAGIMRNGLVEQ
HHHHCCCCEEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
RQRGTPQGGPLSPLLSNIVLDELDKELERRGHKFCRYADDCQIYVGSEEAAYRVKESITE
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHH
YLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRNRGR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
ELKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYA
CCCCCCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHCCCHHHHCCHHHHHCCCCCCCC
THACTVV
CCCCCCC
>Mature Secondary Structure 
GIPKPSGGVRQLGIPTVLDRIVQQAITSVLSDIYEAKFSNSSYGFRPNRSAHHALAAAS
CCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
RYIREGRGYVVDIDLAKYFDTVNHDRLMHRLSEDIADKRVLKLIRSYLQAGIMRNGLVEQ
HHHHCCCCEEEEEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
RQRGTPQGGPLSPLLSNIVLDELDKELERRGHKFCRYADDCQIYVGSEEAAYRVKESITE
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHH
YLEQKLKLTVNREKSAATRVTERTYLSHRFGIDGTIHISKPAQTQMKTRVRQITKRNRGR
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
ELKVVIAELTQYLRGWQDYFKLAIRKSSMKRLDEWIRRRLRCYRLKQRKHRYGIATWLQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QGVTERNAWKLAMSDKGWWRLALTPQTNHAMPTKWFEELGLYSLRDGYESLKVYSEPPYA
CCCCCCCCEEEEECCCCEEEEEECCCCCCCCCHHHHHHCCCHHHHCCHHHHHCCCCCCCC
THACTVV
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]