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The map label for this gene is sgrR [H]

Identifier: 156977537

GI number: 156977537

Start: 1498136

End: 1499746

Strand: Reverse

Name: sgrR [H]

Synonym: VIBHAR_06325

Alternate gene names: 156977537

Gene position: 1499746-1498136 (Counterclockwise)

Preceding gene: 156977538

Following gene: 156977535

Centisome position: 68.05

GC content: 46.8

Gene sequence:

>1611_bases
ATGCAGGCACTAATGTGGTTAAGTTGGCAGCCAAAAGCGGGCCGCAATCAGCGTTCGACATTGCTGCTAAATATAGAGTT
AAGCGCGCTAAAAGAGAGTTTAGCTTTGGAGCGCATTAAGCTGGGGAAGTACGAAAAAGCGCTAGCGATTCTCGATGAAG
ACGAAACTGCATTTGGACGTTTGCTCAAAACCACTTCAGGTGCATCGGTTCAAGAAGGTCGACTCAATATCCAGCTGACT
TATAAGCGTATGTTTGAACGTATAGTCCCTCACCAACTTCACCGCAGCAGTGAGCGCTTCTTTCTGCGCCAAATCTATTG
TTGCTTGGTATCTAGTGACTACAACGGTGTGGTAAAGCCAGAGTTGGCCCACCATTGGCGCTATGATGAGAAGAGCTTTG
AGTGGACATTTTACCTTCGCCCCGGTCTAACGTTTCATAATGGGGCGCCGATTGATGCTGATACCGTGGTGAGTCTATTT
GCCAAACTGAGTTCGTTGGAGTATTACCAGAAAGAGCTGGCTCACGTTACCGACATCACTGCACCAAACCCTCTTAAAGT
AGTGTTTACCCTGAGCAAGCCAGATTTGGGTTTAGCAGGGCTTATATCTGGGGTGAAATACGGCATTCAACCCGTTAGCC
AAGTAAACGTAGCCAACAACAACTTGGTGATTGGTAGTGGCCCGTTTTCGGTGATTGAGCACAATGCGAATCGACTAAAG
CTAAAAGCTTTCGATGCTTATTACGCCTGCCGTGTACTTACCGACATAGTGACGATTTGGATCGTCAACGATGAGAAAAT
GGAGAACCCGTCACTCACTGGTAGTGTGCCTATCAACGTTAGTGAAACTTTATGCGGTCATTATGTTTCGACTCAAGATG
ACAAGGCCCCTCATGATGGTCAACACACTCGAACTGAAGATGGTTGCTTGTTTGCTCTGTTCAACCATCATGCTAAACAG
CCTTTGTCTCGTGCTCAGCGCCGTTATATTGCGGAGTTGATTCAACCTGAGCATTTGGCAGAAGCGATGCGAAAAGAAAA
TACAGTGTTTCGCAGCGTGCCTGCTTCCAACTTACTACCTAGTTGGAAGCCTGTTTTACGTCCTTTTGGGGGCAGAACCA
AGTTACCGAAGACCATCACTATCGCGGGTTACAATTACACTGCGCTTCGTCGCTGCGCTCGTGCTATCTCTTCTCTGCTG
GCATTGGAAGGCTGTAAAGTTGAGACGATCATGTATTCCTACAGAGAGCTAAATGAAAAAGCAGAAAATGGAACGCTAGA
CGAGACGCTGGTAGTGACTAACACCACTTCTGATGACAGCCGTCATGTCTCCGCTTTTACTAACTTCTTTAGCAATGATG
TTTTGTACCATACATTAGGTGAAGAAAATGCGTGGTGGCTTGATGAGCAGTTGGAAAAGGTGAGGTCGTTGGTTCCCCTT
GAAGATTACTTAGTTGCGCTTGAGCCTATTGCTTCAACACTGGTCAGTGAATACTGGATCGCACCAATGTTCCACCATAC
TCAGACACTGCGTTTCCAAGGTGTTTTAGAAGACGTCGCTCTCACTAATTGGGGGTGGCCGGATATTCGATCAGTGTGGT
CAGCAGATTAG

Upstream 100 bases:

>100_bases
GACACCATTAGGTGTTGGTAGTGAAGTCAAAACCACGTTGCAGGAAGTGGCAGATTTGCTGTTCACTTCTCCTCGTCATG
CGCGCAGCTTGTTGTCGCAA

Downstream 100 bases:

>100_bases
TGAAATTCGCGTCCTTCTAGGTCTGTATTAATACATACTTCGATATTGTGTATGTAAATTCGTTACAGCGGTGACTCTAC
CACAACAAACTTGCGTTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 536

Protein sequence:

>536_residues
MQALMWLSWQPKAGRNQRSTLLLNIELSALKESLALERIKLGKYEKALAILDEDETAFGRLLKTTSGASVQEGRLNIQLT
YKRMFERIVPHQLHRSSERFFLRQIYCCLVSSDYNGVVKPELAHHWRYDEKSFEWTFYLRPGLTFHNGAPIDADTVVSLF
AKLSSLEYYQKELAHVTDITAPNPLKVVFTLSKPDLGLAGLISGVKYGIQPVSQVNVANNNLVIGSGPFSVIEHNANRLK
LKAFDAYYACRVLTDIVTIWIVNDEKMENPSLTGSVPINVSETLCGHYVSTQDDKAPHDGQHTRTEDGCLFALFNHHAKQ
PLSRAQRRYIAELIQPEHLAEAMRKENTVFRSVPASNLLPSWKPVLRPFGGRTKLPKTITIAGYNYTALRRCARAISSLL
ALEGCKVETIMYSYRELNEKAENGTLDETLVVTNTTSDDSRHVSAFTNFFSNDVLYHTLGEENAWWLDEQLEKVRSLVPL
EDYLVALEPIASTLVSEYWIAPMFHHTQTLRFQGVLEDVALTNWGWPDIRSVWSAD

Sequences:

>Translated_536_residues
MQALMWLSWQPKAGRNQRSTLLLNIELSALKESLALERIKLGKYEKALAILDEDETAFGRLLKTTSGASVQEGRLNIQLT
YKRMFERIVPHQLHRSSERFFLRQIYCCLVSSDYNGVVKPELAHHWRYDEKSFEWTFYLRPGLTFHNGAPIDADTVVSLF
AKLSSLEYYQKELAHVTDITAPNPLKVVFTLSKPDLGLAGLISGVKYGIQPVSQVNVANNNLVIGSGPFSVIEHNANRLK
LKAFDAYYACRVLTDIVTIWIVNDEKMENPSLTGSVPINVSETLCGHYVSTQDDKAPHDGQHTRTEDGCLFALFNHHAKQ
PLSRAQRRYIAELIQPEHLAEAMRKENTVFRSVPASNLLPSWKPVLRPFGGRTKLPKTITIAGYNYTALRRCARAISSLL
ALEGCKVETIMYSYRELNEKAENGTLDETLVVTNTTSDDSRHVSAFTNFFSNDVLYHTLGEENAWWLDEQLEKVRSLVPL
EDYLVALEPIASTLVSEYWIAPMFHHTQTLRFQGVLEDVALTNWGWPDIRSVWSAD
>Mature_536_residues
MQALMWLSWQPKAGRNQRSTLLLNIELSALKESLALERIKLGKYEKALAILDEDETAFGRLLKTTSGASVQEGRLNIQLT
YKRMFERIVPHQLHRSSERFFLRQIYCCLVSSDYNGVVKPELAHHWRYDEKSFEWTFYLRPGLTFHNGAPIDADTVVSLF
AKLSSLEYYQKELAHVTDITAPNPLKVVFTLSKPDLGLAGLISGVKYGIQPVSQVNVANNNLVIGSGPFSVIEHNANRLK
LKAFDAYYACRVLTDIVTIWIVNDEKMENPSLTGSVPINVSETLCGHYVSTQDDKAPHDGQHTRTEDGCLFALFNHHAKQ
PLSRAQRRYIAELIQPEHLAEAMRKENTVFRSVPASNLLPSWKPVLRPFGGRTKLPKTITIAGYNYTALRRCARAISSLL
ALEGCKVETIMYSYRELNEKAENGTLDETLVVTNTTSDDSRHVSAFTNFFSNDVLYHTLGEENAWWLDEQLEKVRSLVPL
EDYLVALEPIASTLVSEYWIAPMFHHTQTLRFQGVLEDVALTNWGWPDIRSVWSAD

Specific function: Activates the small RNA gene sgrS under glucose- phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding

COG id: COG4533

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786256, Length=541, Percent_Identity=23.4750462107209, Blast_Score=162, Evalue=5e-41,
Organism=Escherichia coli, GI1786650, Length=544, Percent_Identity=23.5294117647059, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60778; Mature: 60778

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALMWLSWQPKAGRNQRSTLLLNIELSALKESLALERIKLGKYEKALAILDEDETAFGR
CCCEEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHHEEEECCCCHHHHH
LLKTTSGASVQEGRLNIQLTYKRMFERIVPHQLHRSSERFFLRQIYCCLVSSDYNGVVKP
HHHCCCCCCEECCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC
ELAHHWRYDEKSFEWTFYLRPGLTFHNGAPIDADTVVSLFAKLSSLEYYQKELAHVTDIT
HHHHHCCCCCCCEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
APNPLKVVFTLSKPDLGLAGLISGVKYGIQPVSQVNVANNNLVIGSGPFSVIEHNANRLK
CCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEECCCHHHHCCCCCEEE
LKAFDAYYACRVLTDIVTIWIVNDEKMENPSLTGSVPINVSETLCGHYVSTQDDKAPHDG
EEEHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCCC
QHTRTEDGCLFALFNHHAKQPLSRAQRRYIAELIQPEHLAEAMRKENTVFRSVPASNLLP
CCCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCEEECCCCHHCCC
SWKPVLRPFGGRTKLPKTITIAGYNYTALRRCARAISSLLALEGCKVETIMYSYRELNEK
CCHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AENGTLDETLVVTNTTSDDSRHVSAFTNFFSNDVLYHTLGEENAWWLDEQLEKVRSLVPL
HCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHCCH
EDYLVALEPIASTLVSEYWIAPMFHHTQTLRFQGVLEDVALTNWGWPDIRSVWSAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC
>Mature Secondary Structure
MQALMWLSWQPKAGRNQRSTLLLNIELSALKESLALERIKLGKYEKALAILDEDETAFGR
CCCEEEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCHHHHEEEECCCCHHHHH
LLKTTSGASVQEGRLNIQLTYKRMFERIVPHQLHRSSERFFLRQIYCCLVSSDYNGVVKP
HHHCCCCCCEECCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCC
ELAHHWRYDEKSFEWTFYLRPGLTFHNGAPIDADTVVSLFAKLSSLEYYQKELAHVTDIT
HHHHHCCCCCCCEEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
APNPLKVVFTLSKPDLGLAGLISGVKYGIQPVSQVNVANNNLVIGSGPFSVIEHNANRLK
CCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEECCCCEEEECCCHHHHCCCCCEEE
LKAFDAYYACRVLTDIVTIWIVNDEKMENPSLTGSVPINVSETLCGHYVSTQDDKAPHDG
EEEHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEECCCCHHHHHCCCCCCCCCCCCCCC
QHTRTEDGCLFALFNHHAKQPLSRAQRRYIAELIQPEHLAEAMRKENTVFRSVPASNLLP
CCCCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCEEECCCCHHCCC
SWKPVLRPFGGRTKLPKTITIAGYNYTALRRCARAISSLLALEGCKVETIMYSYRELNEK
CCHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AENGTLDETLVVTNTTSDDSRHVSAFTNFFSNDVLYHTLGEENAWWLDEQLEKVRSLVPL
HCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCEEHHHHHHHHHHHCCH
EDYLVALEPIASTLVSEYWIAPMFHHTQTLRFQGVLEDVALTNWGWPDIRSVWSAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA