| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
Click here to switch to the map view.
The map label for this gene is 156977435
Identifier: 156977435
GI number: 156977435
Start: 1404173
End: 1405075
Strand: Reverse
Name: 156977435
Synonym: VIBHAR_06222
Alternate gene names: NA
Gene position: 1405075-1404173 (Counterclockwise)
Preceding gene: 156977436
Following gene: 156977433
Centisome position: 63.75
GC content: 40.86
Gene sequence:
>903_bases ATGAGTGATGAAGACACTGAGCGATTTGGAGATCTGTTTCCACGCTCTCGTTCTGGCATTGCATCTAAGCCGAAGGAAAC GTTATCGCTTCCTCTTTGGAAAGAAATCGATCTAGTTTTCAAGGATGTTTTTGGTGTAAGTGAAGAGCGTAGAGATGAAG CCATACATAGGTACAACGTTCTAGAACTTCTTATTGAGCGGTATGGAAAAAATTTCTCTAAGAAAGAAATTGATGACGCA TTCCCATTTTTAAAAGAAAAGTTCGGTTCAACTACGCCTTCGGCAAGCAGTATTTACAGATACTGGAGAACTTTTAAGAA ATCGGATTTCCAGCTGTCATCACTTATACCCAAAGTGACAGCTGGCAACACGAGCAAAAACGTGCCGGAAGAACTTGAGC CATTAATTCAAGAAGCAATAAAAGATTATTTCTCAGCTGAAGAGCAAACAGCTGTTTCCGCATACCTCACACTTGAAACT GAAGTTTCTAGGTATAACGAAACTAATAACACTCAGCACAGTTTGTTTTCAATACAATCGTTTAGGAACAGGCTGAGAAA GCACTCTGAGTATGAAAAAATTGTGCTTAGGAAGGGAAAAAGTGCGGCTGATGCGACTTTTAGGAAAGTGGGGCAAAGAC CTGCAACAACAAGAGCACTGGAACGAGTAGAGGCAGATCATACCAGACTTGATCTATTTGTTATTGATGAACGCTATGGT ATACCGTTAGGACGGCCTTGGCTTACGCTTTTATACGACACTCATACAAAGAGCATAATAGGCTTCTACCTAGGATTCGA GCCACCGAGTTACCTTTCAGTCTCATTAGCTCTTGAAAACTCTATTCTACCTAAAGATTATGTCAAAGAATTATATCCCT CTGTAGAAGGGGTTTGGCCCTGA
Upstream 100 bases:
>100_bases TATCATTACCAGCTCTTTACGACCTGATTGCTAGACAACTTTTGAAAATCGATATGCATCAGCCGATTGACTGGCAAACT CCGATTTGGAGCTCATAGAT
Downstream 100 bases:
>100_bases GGGATCCCCACATCTTTTCACCGGAACTCTGCCGCACTTATCGCTTTGAGGCCTCCTACGGCTAAGGCCAGATCCTTCAC GCTAAATGAGTAAGCTTCTC
Product: hypothetical protein
Products: NA
Alternate protein names: Transposase; Integrase Catalytic Region; TniA Transposase; Integrase; Transposase-Like Mu; Transposon Transposition Protein B; Plasmid Replication Initiator Protein-Like Protein; Transposase OrfA; Urease Subunit Beta; Transposase TniA For Transposition Module Tni; Transposase-Like Protein; TniA Protein; Transposition Protein B; Integrase/Transposase
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MSDEDTERFGDLFPRSRSGIASKPKETLSLPLWKEIDLVFKDVFGVSEERRDEAIHRYNVLELLIERYGKNFSKKEIDDA FPFLKEKFGSTTPSASSIYRYWRTFKKSDFQLSSLIPKVTAGNTSKNVPEELEPLIQEAIKDYFSAEEQTAVSAYLTLET EVSRYNETNNTQHSLFSIQSFRNRLRKHSEYEKIVLRKGKSAADATFRKVGQRPATTRALERVEADHTRLDLFVIDERYG IPLGRPWLTLLYDTHTKSIIGFYLGFEPPSYLSVSLALENSILPKDYVKELYPSVEGVWP
Sequences:
>Translated_300_residues MSDEDTERFGDLFPRSRSGIASKPKETLSLPLWKEIDLVFKDVFGVSEERRDEAIHRYNVLELLIERYGKNFSKKEIDDA FPFLKEKFGSTTPSASSIYRYWRTFKKSDFQLSSLIPKVTAGNTSKNVPEELEPLIQEAIKDYFSAEEQTAVSAYLTLET EVSRYNETNNTQHSLFSIQSFRNRLRKHSEYEKIVLRKGKSAADATFRKVGQRPATTRALERVEADHTRLDLFVIDERYG IPLGRPWLTLLYDTHTKSIIGFYLGFEPPSYLSVSLALENSILPKDYVKELYPSVEGVWP >Mature_299_residues SDEDTERFGDLFPRSRSGIASKPKETLSLPLWKEIDLVFKDVFGVSEERRDEAIHRYNVLELLIERYGKNFSKKEIDDAF PFLKEKFGSTTPSASSIYRYWRTFKKSDFQLSSLIPKVTAGNTSKNVPEELEPLIQEAIKDYFSAEEQTAVSAYLTLETE VSRYNETNNTQHSLFSIQSFRNRLRKHSEYEKIVLRKGKSAADATFRKVGQRPATTRALERVEADHTRLDLFVIDERYGI PLGRPWLTLLYDTHTKSIIGFYLGFEPPSYLSVSLALENSILPKDYVKELYPSVEGVWP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34631; Mature: 34500
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 0.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDEDTERFGDLFPRSRSGIASKPKETLSLPLWKEIDLVFKDVFGVSEERRDEAIHRYNV CCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH LELLIERYGKNFSKKEIDDAFPFLKEKFGSTTPSASSIYRYWRTFKKSDFQLSSLIPKVT HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHCCHHC AGNTSKNVPEELEPLIQEAIKDYFSAEEQTAVSAYLTLETEVSRYNETNNTQHSLFSIQS CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHEEEEHHHHHHHCCCCCCHHHHHHHHH FRNRLRKHSEYEKIVLRKGKSAADATFRKVGQRPATTRALERVEADHTRLDLFVIDERYG HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEEECCCC IPLGRPWLTLLYDTHTKSIIGFYLGFEPPSYLSVSLALENSILPKDYVKELYPSVEGVWP CCCCCCHHEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCC >Mature Secondary Structure SDEDTERFGDLFPRSRSGIASKPKETLSLPLWKEIDLVFKDVFGVSEERRDEAIHRYNV CCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH LELLIERYGKNFSKKEIDDAFPFLKEKFGSTTPSASSIYRYWRTFKKSDFQLSSLIPKVT HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHCCHHC AGNTSKNVPEELEPLIQEAIKDYFSAEEQTAVSAYLTLETEVSRYNETNNTQHSLFSIQS CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHEEEEHHHHHHHCCCCCCHHHHHHHHH FRNRLRKHSEYEKIVLRKGKSAADATFRKVGQRPATTRALERVEADHTRLDLFVIDERYG HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEEECCCC IPLGRPWLTLLYDTHTKSIIGFYLGFEPPSYLSVSLALENSILPKDYVKELYPSVEGVWP CCCCCCHHEEEECCCHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA