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The map label for this gene is gspD [C]

Identifier: 156977409

GI number: 156977409

Start: 1375323

End: 1376693

Strand: Reverse

Name: gspD [C]

Synonym: VIBHAR_06196

Alternate gene names: 156977409

Gene position: 1376693-1375323 (Counterclockwise)

Preceding gene: 156977410

Following gene: 156977408

Centisome position: 62.46

GC content: 43.18

Gene sequence:

>1371_bases
ATGGTAATACAATCTCGAATTAGCCGATCACTTTCAATATTCATCACGTCCGTCTTTCTTTGCTTGTTCTTTGTGACAAA
AACACACGCAGCTGATCGTTCAATCACTCTACATGATGGACAGCATATTTCGCTTAAACAGCCGATTGGCAAAGTGTTCA
TCAGCAATCCTGATGTTGCTGACTATAAAGTCATTAACGACACAACCTTGGTCGTGTTTGCTAACGGTATCGGGCAAGCA
CGCTTGATTGTCTATGGCATCGATGAAGATGTCTTGCTTTCAGACCGAATTATTGTGGACTTGGATTTGACTGATGTTAG
ACGTCAGATCAAATTTAATTTTCCGGATGCGAAGGTCACGGTTCAGTCAATTGGGGAACAAGTCGCTGTCAGTGGTTTTG
TCGATTCAGAAGAGACACGAGACGAAATCTATCGTTTAGTTGCAACCTTACTTGGGCGTGAAAAAATTAAGAAATGGGAT
AAAGCGGATAAGTTTGAGTTTAAATCTGATTACGCCCAGTACGAGGCTCCGGAAGGGATGATTTTTGCGCGTAACATGTC
TTGGAGAGGAATTGTCGAGCGCATTGAGGTTGCAACGACTCAACAAGTAAACGTTAAAATCTCGGTGGCACAAGTGACAG
AATCCTTTGGTAAAACTGTTGGTGTAGACTGGAGTTCTGTCGGCTCTAGCGTTGGTGAGTTCGTTTTCGATCAGTTTGAT
GCCGCGAATCTAAGTACGCTAATTACCGCTTTAGGCAATGATCAAGTTGCTGAAGTATTGGCAGAACCAAACCTGACGGT
GCTATCTGGTGAATCGGCTAGTTTTTTAGTTGGTGGTGAAGTACCAGTGATTATCTCAACGAATAATAACGTAAACATTT
CCTTCAAAGAGTTTGGTATAAAGCTGGATCTTACAGCAAAAGTTTTAAGCAAAGACAAAATTCGCATGCAACTCGCACCG
GAAGTGAGTGAGGTCGAAAGCTACGTAGAAGCAGCAGGTATAAAAGTGCCGCAATTGGCTTCAAGGCGAGCGTTAACAAC
GGTTGAGTTAGCTGATGGCGACAGCTTTATTCTAGGTGGCTTGATGAGCAGTGCTGACCTAGAAAAAATGCAAAAAATTC
CCTTTGTCGGCGATATCCCAATATTAGGTGCTGCGTTTCGCAAAGCTATGACTGAGAGAAAGCGCACGGAATTGATTATC
GTGGCAACGGTAAACCTAGTTGAGCCTATTAAGCCGAAAGATGTGCAATTACCGTACATCAAGAAAACGTCAACATTGGC
TCGTTGGTTGAACATCGAGTCCAATAAAGATTCTATTGCGTCGTCTGATGCCACGATTCGTCTGTTGTCGGAAGGAGGGT
TTATCCAATGA

Upstream 100 bases:

>100_bases
ACAACAAACCAGAGTACGCTGAAGTGCGCAATGTTATTGATAATTACACCGGCATCGAAGAACTACGTGGCAATGTCGTT
GAACGAAGGGAGGCTCTTTA

Downstream 100 bases:

>100_bases
AGAACCTTGTATTCATTGCTTTGTTGACATTATCACTCCTAGGTTGTGCAAACGAGCGGTATTTCGGTGGCAATGGCGCA
GAAGCGATTGTGTATAAAGA

Product: Flp pilus assembly protein, secretin CapC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MVIQSRISRSLSIFITSVFLCLFFVTKTHAADRSITLHDGQHISLKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQA
RLIVYGIDEDVLLSDRIIVDLDLTDVRRQIKFNFPDAKVTVQSIGEQVAVSGFVDSEETRDEIYRLVATLLGREKIKKWD
KADKFEFKSDYAQYEAPEGMIFARNMSWRGIVERIEVATTQQVNVKISVAQVTESFGKTVGVDWSSVGSSVGEFVFDQFD
AANLSTLITALGNDQVAEVLAEPNLTVLSGESASFLVGGEVPVIISTNNNVNISFKEFGIKLDLTAKVLSKDKIRMQLAP
EVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQKIPFVGDIPILGAAFRKAMTERKRTELII
VATVNLVEPIKPKDVQLPYIKKTSTLARWLNIESNKDSIASSDATIRLLSEGGFIQ

Sequences:

>Translated_456_residues
MVIQSRISRSLSIFITSVFLCLFFVTKTHAADRSITLHDGQHISLKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQA
RLIVYGIDEDVLLSDRIIVDLDLTDVRRQIKFNFPDAKVTVQSIGEQVAVSGFVDSEETRDEIYRLVATLLGREKIKKWD
KADKFEFKSDYAQYEAPEGMIFARNMSWRGIVERIEVATTQQVNVKISVAQVTESFGKTVGVDWSSVGSSVGEFVFDQFD
AANLSTLITALGNDQVAEVLAEPNLTVLSGESASFLVGGEVPVIISTNNNVNISFKEFGIKLDLTAKVLSKDKIRMQLAP
EVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQKIPFVGDIPILGAAFRKAMTERKRTELII
VATVNLVEPIKPKDVQLPYIKKTSTLARWLNIESNKDSIASSDATIRLLSEGGFIQ
>Mature_456_residues
MVIQSRISRSLSIFITSVFLCLFFVTKTHAADRSITLHDGQHISLKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQA
RLIVYGIDEDVLLSDRIIVDLDLTDVRRQIKFNFPDAKVTVQSIGEQVAVSGFVDSEETRDEIYRLVATLLGREKIKKWD
KADKFEFKSDYAQYEAPEGMIFARNMSWRGIVERIEVATTQQVNVKISVAQVTESFGKTVGVDWSSVGSSVGEFVFDQFD
AANLSTLITALGNDQVAEVLAEPNLTVLSGESASFLVGGEVPVIISTNNNVNISFKEFGIKLDLTAKVLSKDKIRMQLAP
EVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQKIPFVGDIPILGAAFRKAMTERKRTELII
VATVNLVEPIKPKDVQLPYIKKTSTLARWLNIESNKDSIASSDATIRLLSEGGFIQ

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=160, Percent_Identity=32.5, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1789793, Length=215, Percent_Identity=26.9767441860465, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 50178; Mature: 50178

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIQSRISRSLSIFITSVFLCLFFVTKTHAADRSITLHDGQHISLKQPIGKVFISNPDVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEEECCCCCC
DYKVINDTTLVVFANGIGQARLIVYGIDEDVLLSDRIIVDLDLTDVRRQIKFNFPDAKVT
CEEEECCEEEEEEECCCCCEEEEEEECCCCEEECCEEEEEECHHHHHHHEEECCCCCEEE
VQSIGEQVAVSGFVDSEETRDEIYRLVATLLGREKIKKWDKADKFEFKSDYAQYEAPEGM
HHHCCCHHEEECCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHHHHHCCCCCCE
IFARNMSWRGIVERIEVATTQQVNVKISVAQVTESFGKTVGVDWSSVGSSVGEFVFDQFD
EEEECCCHHHHHHHHHHCCEEEEEEEEEHHHHHHHHCCEECCCHHHHHHHHHHHHHHHCC
AANLSTLITALGNDQVAEVLAEPNLTVLSGESASFLVGGEVPVIISTNNNVNISFKEFGI
CCCHHHHHHHHCCHHHHHHHCCCCEEEEECCCCEEEECCCEEEEEECCCCEEEEEHHHCE
KLDLTAKVLSKDKIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGG
EEEEHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCHHCCCCEEEEEECCCCCEEEHH
LMSSADLEKMQKIPFVGDIPILGAAFRKAMTERKRTELIIVATVNLVEPIKPKDVQLPYI
HHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
KKTSTLARWLNIESNKDSIASSDATIRLLSEGGFIQ
CCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MVIQSRISRSLSIFITSVFLCLFFVTKTHAADRSITLHDGQHISLKQPIGKVFISNPDVA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEEECCCCCC
DYKVINDTTLVVFANGIGQARLIVYGIDEDVLLSDRIIVDLDLTDVRRQIKFNFPDAKVT
CEEEECCEEEEEEECCCCCEEEEEEECCCCEEECCEEEEEECHHHHHHHEEECCCCCEEE
VQSIGEQVAVSGFVDSEETRDEIYRLVATLLGREKIKKWDKADKFEFKSDYAQYEAPEGM
HHHCCCHHEEECCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHHHHHCCCCCCE
IFARNMSWRGIVERIEVATTQQVNVKISVAQVTESFGKTVGVDWSSVGSSVGEFVFDQFD
EEEECCCHHHHHHHHHHCCEEEEEEEEEHHHHHHHHCCEECCCHHHHHHHHHHHHHHHCC
AANLSTLITALGNDQVAEVLAEPNLTVLSGESASFLVGGEVPVIISTNNNVNISFKEFGI
CCCHHHHHHHHCCHHHHHHHCCCCEEEEECCCCEEEECCCEEEEEECCCCEEEEEHHHCE
KLDLTAKVLSKDKIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGG
EEEEHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCHHCCCCEEEEEECCCCCEEEHH
LMSSADLEKMQKIPFVGDIPILGAAFRKAMTERKRTELIIVATVNLVEPIKPKDVQLPYI
HHCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC
KKTSTLARWLNIESNKDSIASSDATIRLLSEGGFIQ
CCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]