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The map label for this gene is rbsD

Identifier: 156977360

GI number: 156977360

Start: 1324838

End: 1325257

Strand: Reverse

Name: rbsD

Synonym: VIBHAR_06146

Alternate gene names: 156977360

Gene position: 1325257-1324838 (Counterclockwise)

Preceding gene: 156977362

Following gene: 156977359

Centisome position: 60.13

GC content: 45.71

Gene sequence:

>420_bases
ATGAAAAAAAGTACCTTAATTAACTCTGAAGTTTCTCGCTTGATAGCAACGCTAGGCCATACCGATGAAATCACCATTTG
TGACGCGGGTTTGCCGATTCCTGACCATGTTCAACGCATCGATTTAGCGCTGGCTCATGGTATCCCTGGTTTCCTTGATA
CCGTTCGCGTGATTCTGTCTGAGTCCCAAATTGAAGGAGTCATCATTGCTGAAGAATTCGCAACAGTTAGCCCAGTTCAT
CATGATGCGTTAATTACTGAGCTAGCCCAAGAGAGCGGGCTAACTGGTAAGCCAATCGCGATTAACTATGTATCGCACGA
AGATTTCAAAGTTCGAACATCACAAAGCCGCGCTGTCGTTAGAACAGGCGAGTGTACACCGTATGCGAACGTAATTTTGC
AAGCTGGCGTGGTGTTTTAA

Upstream 100 bases:

>100_bases
ATTATTCATCGAAACGTTTCGATGTGTTTTTTGTCAATATAATGAATTATCAAAGACAGACGATCAAATTTGTACGCACG
TGTAACCAAAGGTTGATGAG

Downstream 100 bases:

>100_bases
ACCACAATTAATTGAGGACAAATTATGGCTCAAGCCATTCTACAACTCAGCGAGATTGAGAAAGCTTTCCCAGGCGTTAA
GGCGTTGGATAAAGCCAGTC

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKKSTLINSEVSRLIATLGHTDEITICDAGLPIPDHVQRIDLALAHGIPGFLDTVRVILSESQIEGVIIAEEFATVSPVH
HDALITELAQESGLTGKPIAINYVSHEDFKVRTSQSRAVVRTGECTPYANVILQAGVVF

Sequences:

>Translated_139_residues
MKKSTLINSEVSRLIATLGHTDEITICDAGLPIPDHVQRIDLALAHGIPGFLDTVRVILSESQIEGVIIAEEFATVSPVH
HDALITELAQESGLTGKPIAINYVSHEDFKVRTSQSRAVVRTGECTPYANVILQAGVVF
>Mature_139_residues
MKKSTLINSEVSRLIATLGHTDEITICDAGLPIPDHVQRIDLALAHGIPGFLDTVRVILSESQIEGVIIAEEFATVSPVH
HDALITELAQESGLTGKPIAINYVSHEDFKVRTSQSRAVVRTGECTPYANVILQAGVVF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=50.3597122302158, Blast_Score=154, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_VIBHB (A7N2S3)

Other databases:

- EMBL:   CP000790
- RefSeq:   YP_001448266.1
- ProteinModelPortal:   A7N2S3
- SMR:   A7N2S3
- STRING:   A7N2S3
- GeneID:   5556619
- GenomeReviews:   CP000790_GR
- KEGG:   vha:VIBHAR_06146
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- ProtClustDB:   PRK11797
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 14998; Mature: 14998

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSTLINSEVSRLIATLGHTDEITICDAGLPIPDHVQRIDLALAHGIPGFLDTVRVILS
CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
ESQIEGVIIAEEFATVSPVHHDALITELAQESGLTGKPIAINYVSHEDFKVRTSQSRAVV
HCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCEEE
RTGECTPYANVILQAGVVF
ECCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MKKSTLINSEVSRLIATLGHTDEITICDAGLPIPDHVQRIDLALAHGIPGFLDTVRVILS
CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
ESQIEGVIIAEEFATVSPVHHDALITELAQESGLTGKPIAINYVSHEDFKVRTSQSRAVV
HCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCEEE
RTGECTPYANVILQAGVVF
ECCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA