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The map label for this gene is rbgA [H]

Identifier: 156977301

GI number: 156977301

Start: 1249513

End: 1250457

Strand: Direct

Name: rbgA [H]

Synonym: VIBHAR_06087

Alternate gene names: 156977301

Gene position: 1249513-1250457 (Clockwise)

Preceding gene: 156977299

Following gene: 156977302

Centisome position: 56.69

GC content: 45.82

Gene sequence:

>945_bases
ATGGTTAACAACTCTATCCAGTGGTTTCCGGGCCACATGCATAAAGCCCAAAAAGAGATTGCTGAAGCGATCCCTCAAAT
AGATGTCATTATTGAAGTGCTTGATGCTCGTATCCCTTTTAGTAGTGAAAACCCTATGATCGCGGAGCTCAAGGGCGATA
AGCCAGTAGTAAAAGTGCTTAACAAACGCGATCTTGCGGATCCGGAGTTGACTCAAGTTTGGATTGACCACTTCGAGAAA
GAGCACAACGTAAAAGCGATTGCCATTACTACTTCTCAACAGTCAGAAGTCCAAAAAATTATGGAGTTAGTACGTAAGCT
TGCTCCGCATCGCGAAGAAATTGGCAAGAACATTCGTACCATGATCATGGGTATTCCAAACGTTGGTAAATCCACCATTA
TCAATGCTTTGGCAGGCCGAACTATCGCTGTGACAGGTAACCAACCAGCGGTTACACGTCGCCAGCAACGCATTAACCTT
CAAAATGGCATTGTACTTTCAGATACTCCTGGGATTCTTTGGCCAAAAGTAGAAAACCCGCACAGCGGCTTCCGTCTTGC
TGCAACTGGCGCAGTAAAAGACACGGCAATGGAATACGACGAAGTGGCATTTTACACAGTCGAATACCTAGCCGCTCACT
ACCCGGAGAAGTTGAAAGAGCGCTACCAAATCGATGAACTTCCAGAATCGGATATTGAGATCATGGAAGAGATTGGTCGT
CGTCGTGGTGCACTTCGTGCTGGCGGTCGTGTAGACCTTCACAAAGTATCAGAGATCCTTCTTCATGAACTTCGCCAAGG
CACCTTGGGCCAGATTACTCTAGAGCTTCCTGAGATGATTACTCAAGAGCTAATTGAGGTAGAAATCGAAACCGCTCGTA
AGGAAGAAGAGAAAGCGAAACGCAAAGAGGAACGTCGTAAACGTTATCTTCGCAACAAACGATAA

Upstream 100 bases:

>100_bases
GTTCAAATTGACTTTGACACCTCAAACACTATTCATTCTTTTGGTACCCCACTTGATACCCCGCAGTAATTTTTCAAAAA
ATCAAAGGTAGAAATTTCAA

Downstream 100 bases:

>100_bases
TAGCGCTCCTATCTCCCTTCTCAAGGCACGTGTTACACGTGCCTTTTTTTGTGCTTAAATTTTTCATCTCAGTGCAAAAG
CGCGACGCTTTTCTCATTGC

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MVNNSIQWFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPVVKVLNKRDLADPELTQVWIDHFEK
EHNVKAIAITTSQQSEVQKIMELVRKLAPHREEIGKNIRTMIMGIPNVGKSTIINALAGRTIAVTGNQPAVTRRQQRINL
QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKERYQIDELPESDIEIMEEIGR
RRGALRAGGRVDLHKVSEILLHELRQGTLGQITLELPEMITQELIEVEIETARKEEEKAKRKEERRKRYLRNKR

Sequences:

>Translated_314_residues
MVNNSIQWFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPVVKVLNKRDLADPELTQVWIDHFEK
EHNVKAIAITTSQQSEVQKIMELVRKLAPHREEIGKNIRTMIMGIPNVGKSTIINALAGRTIAVTGNQPAVTRRQQRINL
QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKERYQIDELPESDIEIMEEIGR
RRGALRAGGRVDLHKVSEILLHELRQGTLGQITLELPEMITQELIEVEIETARKEEEKAKRKEERRKRYLRNKR
>Mature_314_residues
MVNNSIQWFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPVVKVLNKRDLADPELTQVWIDHFEK
EHNVKAIAITTSQQSEVQKIMELVRKLAPHREEIGKNIRTMIMGIPNVGKSTIINALAGRTIAVTGNQPAVTRRQQRINL
QNGIVLSDTPGILWPKVENPHSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKERYQIDELPESDIEIMEEIGR
RRGALRAGGRVDLHKVSEILLHELRQGTLGQITLELPEMITQELIEVEIETARKEEEKAKRKEERRKRYLRNKR

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=294, Percent_Identity=31.6326530612245, Blast_Score=135, Evalue=5e-32,
Organism=Homo sapiens, GI7019419, Length=295, Percent_Identity=26.7796610169492, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI45593130, Length=179, Percent_Identity=29.608938547486, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45643129, Length=179, Percent_Identity=29.608938547486, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45643127, Length=179, Percent_Identity=29.608938547486, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI296317324, Length=185, Percent_Identity=30.8108108108108, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI9506611, Length=185, Percent_Identity=30.8108108108108, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193211047, Length=221, Percent_Identity=30.7692307692308, Blast_Score=95, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17534827, Length=272, Percent_Identity=27.9411764705882, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI115535155, Length=286, Percent_Identity=25.5244755244755, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI32563985, Length=266, Percent_Identity=28.9473684210526, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI25143545, Length=286, Percent_Identity=25.5244755244755, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI71990926, Length=266, Percent_Identity=28.9473684210526, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI32563983, Length=266, Percent_Identity=28.9473684210526, Blast_Score=81, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI71982363, Length=186, Percent_Identity=30.1075268817204, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324381, Length=271, Percent_Identity=28.0442804428044, Blast_Score=91, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6320842, Length=280, Percent_Identity=27.5, Blast_Score=79, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6323744, Length=221, Percent_Identity=28.9592760180996, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI85815858, Length=301, Percent_Identity=28.5714285714286, Blast_Score=118, Evalue=4e-27,
Organism=Drosophila melanogaster, GI19922460, Length=294, Percent_Identity=28.2312925170068, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI28572990, Length=206, Percent_Identity=33.9805825242718, Blast_Score=88, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 35878; Mature: 35878

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNNSIQWFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPVVKVL
CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHH
NKRDLADPELTQVWIDHFEKEHNVKAIAITTSQQSEVQKIMELVRKLAPHREEIGKNIRT
HHCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
MIMGIPNVGKSTIINALAGRTIAVTGNQPAVTRRQQRINLQNGIVLSDTPGILWPKVENP
HHHCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCEEEECCCCEECCCCCCC
HSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKERYQIDELPESDIEIMEEIGR
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHH
RRGALRAGGRVDLHKVSEILLHELRQGTLGQITLELPEMITQELIEVEIETARKEEEKAK
HHCCCCCCCCCCHHHHHHHHHHHHCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
RKEERRKRYLRNKR
HHHHHHHHHHCCCC
>Mature Secondary Structure
MVNNSIQWFPGHMHKAQKEIAEAIPQIDVIIEVLDARIPFSSENPMIAELKGDKPVVKVL
CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHH
NKRDLADPELTQVWIDHFEKEHNVKAIAITTSQQSEVQKIMELVRKLAPHREEIGKNIRT
HHCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
MIMGIPNVGKSTIINALAGRTIAVTGNQPAVTRRQQRINLQNGIVLSDTPGILWPKVENP
HHHCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCEEEECCCCEECCCCCCC
HSGFRLAATGAVKDTAMEYDEVAFYTVEYLAAHYPEKLKERYQIDELPESDIEIMEEIGR
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHH
RRGALRAGGRVDLHKVSEILLHELRQGTLGQITLELPEMITQELIEVEIETARKEEEKAK
HHCCCCCCCCCCHHHHHHHHHHHHCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
RKEERRKRYLRNKR
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]