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The map label for this gene is yhjC [H]

Identifier: 156977233

GI number: 156977233

Start: 1203447

End: 1204355

Strand: Direct

Name: yhjC [H]

Synonym: VIBHAR_06019

Alternate gene names: 156977233

Gene position: 1203447-1204355 (Clockwise)

Preceding gene: 156977231

Following gene: 156977236

Centisome position: 54.6

GC content: 45.76

Gene sequence:

>909_bases
ATGGGATTAACTGAGATGCTTGATAAGATAGACCCGCAATGGCTTAAGAGTTTCCACTGTGTTTACGAGAACAACAGCTT
TAAACGAGCCGCGGAATTCTTGTGTTTACCGACATCTAATATCAGCCGCCACATTGCTTTACTCGAAGAGCAACTTGATG
TGCGATTATTTGATAGAACCACAAGACGTATTTGCGCTACCGAAGCCGGAGAGCAACTTTACCTTCGCACGCAGCCATTG
TTCGACAAACTCAATAACGCACTTGAAGAGGTCACTCAGCACTCGCACGAAGTCATGGGGCAGCTCAATATCCTGATGCC
TGATTCACCAGAACTGGCTAAAGCTGTTGTCTCGTTTTGTGCTCAACATCCTTCGATTACATTAAATTGCGAGACCAACC
TGAGCCCGAAAGAGGACTTGCTGGACGGGTTTGACGTGATCTTAAGTTTTCATCAAGGGAAGTTAGAAGACAGCAATTGG
GTTGCCAAAGAAATTAAGCGCTGGCCAAGTGTTGTTGTGGCATCACCTAAACTGCTACAAAACTACCAAAAGCCGTTTCA
GATTAACGATTTAAAACACGTCCCTTGCATCAGCAGCTTTACCGCCTTGAAAGGTACACCGTGGGTTTTCAAAACAGCAG
ATGGCTCCTTGATAACTCAAAGAGTGGCATCGTCATTTAAGGTCAACAGCGGACAGTTCGCTAAAACGGGGGCGCTGGCT
GGACTTGGGTTCGCAATACTGCCCGTTGGCTTTTGCCATCAAGAAATCGATTCTGGTGAGCTAGAAGTGATCGAGCTGGG
ATACGAACCAGAAGATTTGGTGCTGTATGCCTTTTACGCGTCGCGAAAACATTTGGCGAAGAAGATACCCGTATTTATCG
AACACATTAGAAAGCAAGCAAATGAATAG

Upstream 100 bases:

>100_bases
AACTCATAAGAAACCTTTATCCAGAAACGACGTTGGTGAGCATTGTATAAACCTGATTTCGGTAATAAAGTGGGTTTAAC
TGGCTTTATAATCCAACATA

Downstream 100 bases:

>100_bases
CAAGGGTTGATACAATACCAACCTTGTCATTTAAAAGCATCGAATAATAAAGATAAGAAAAATAACGGCACTCCAAATAT
ATTAAACAGCCGACACAGTG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MGLTEMLDKIDPQWLKSFHCVYENNSFKRAAEFLCLPTSNISRHIALLEEQLDVRLFDRTTRRICATEAGEQLYLRTQPL
FDKLNNALEEVTQHSHEVMGQLNILMPDSPELAKAVVSFCAQHPSITLNCETNLSPKEDLLDGFDVILSFHQGKLEDSNW
VAKEIKRWPSVVVASPKLLQNYQKPFQINDLKHVPCISSFTALKGTPWVFKTADGSLITQRVASSFKVNSGQFAKTGALA
GLGFAILPVGFCHQEIDSGELEVIELGYEPEDLVLYAFYASRKHLAKKIPVFIEHIRKQANE

Sequences:

>Translated_302_residues
MGLTEMLDKIDPQWLKSFHCVYENNSFKRAAEFLCLPTSNISRHIALLEEQLDVRLFDRTTRRICATEAGEQLYLRTQPL
FDKLNNALEEVTQHSHEVMGQLNILMPDSPELAKAVVSFCAQHPSITLNCETNLSPKEDLLDGFDVILSFHQGKLEDSNW
VAKEIKRWPSVVVASPKLLQNYQKPFQINDLKHVPCISSFTALKGTPWVFKTADGSLITQRVASSFKVNSGQFAKTGALA
GLGFAILPVGFCHQEIDSGELEVIELGYEPEDLVLYAFYASRKHLAKKIPVFIEHIRKQANE
>Mature_301_residues
GLTEMLDKIDPQWLKSFHCVYENNSFKRAAEFLCLPTSNISRHIALLEEQLDVRLFDRTTRRICATEAGEQLYLRTQPLF
DKLNNALEEVTQHSHEVMGQLNILMPDSPELAKAVVSFCAQHPSITLNCETNLSPKEDLLDGFDVILSFHQGKLEDSNWV
AKEIKRWPSVVVASPKLLQNYQKPFQINDLKHVPCISSFTALKGTPWVFKTADGSLITQRVASSFKVNSGQFAKTGALAG
LGFAILPVGFCHQEIDSGELEVIELGYEPEDLVLYAFYASRKHLAKKIPVFIEHIRKQANE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=29.9319727891156, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1786401, Length=306, Percent_Identity=29.4117647058824, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=27.0547945205479, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=28.3216783216783, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=23.7113402061856, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=25.2559726962457, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1786713, Length=309, Percent_Identity=25.5663430420712, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082132, Length=297, Percent_Identity=23.9057239057239, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790011, Length=260, Percent_Identity=24.6153846153846, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1786448, Length=298, Percent_Identity=25.503355704698, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34074; Mature: 33943

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLTEMLDKIDPQWLKSFHCVYENNSFKRAAEFLCLPTSNISRHIALLEEQLDVRLFDRT
CCHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHH
TRRICATEAGEQLYLRTQPLFDKLNNALEEVTQHSHEVMGQLNILMPDSPELAKAVVSFC
HHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHH
AQHPSITLNCETNLSPKEDLLDGFDVILSFHQGKLEDSNWVAKEIKRWPSVVVASPKLLQ
HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEECHHHHH
NYQKPFQINDLKHVPCISSFTALKGTPWVFKTADGSLITQRVASSFKVNSGQFAKTGALA
HCCCCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHH
GLGFAILPVGFCHQEIDSGELEVIELGYEPEDLVLYAFYASRKHLAKKIPVFIEHIRKQA
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHC
NE
CC
>Mature Secondary Structure 
GLTEMLDKIDPQWLKSFHCVYENNSFKRAAEFLCLPTSNISRHIALLEEQLDVRLFDRT
CHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHH
TRRICATEAGEQLYLRTQPLFDKLNNALEEVTQHSHEVMGQLNILMPDSPELAKAVVSFC
HHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHH
AQHPSITLNCETNLSPKEDLLDGFDVILSFHQGKLEDSNWVAKEIKRWPSVVVASPKLLQ
HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEECHHHHH
NYQKPFQINDLKHVPCISSFTALKGTPWVFKTADGSLITQRVASSFKVNSGQFAKTGALA
HCCCCCCCCCCCCCCCHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHH
GLGFAILPVGFCHQEIDSGELEVIELGYEPEDLVLYAFYASRKHLAKKIPVFIEHIRKQA
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHC
NE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]