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The map label for this gene is yqhD [H]

Identifier: 156977161

GI number: 156977161

Start: 1135322

End: 1136515

Strand: Direct

Name: yqhD [H]

Synonym: VIBHAR_05947

Alternate gene names: 156977161

Gene position: 1135322-1136515 (Clockwise)

Preceding gene: 156977158

Following gene: 156977163

Centisome position: 51.51

GC content: 47.15

Gene sequence:

>1194_bases
ATGCACATATTCACTCTCCTCACATTGGAAGCTAGAGGTATAATAATGAACTTTTCATACGTTAACCCAACTCAAATCTT
CTTCGGCCAAGGCCAAATCGCGGCAATCAAAGACGCAATTCCTGACGACCAAAAAGTACTTGTAATCTACGGCGGCGGCT
CGATCAAGAAGAACGGTGTTTACGATCAAGTAGCGCAAGCATTGGAAGGCCGAGAGTGGCTTGAGTTTTCGGGTGTTGAG
CCAAATCCAACCAAAGAAACACTAGATAAAGCGGTAGCTATCGTAAAAGAACAAAACGTTGACTTTATCCTAGCGGTAGG
TGGTGGTTCAGTTATCGATGGTTCTAAGTACGTCGCAGCATCAGCAAAATACGACGGTGACGGCTGGGACATCATGGTAG
GCAAGCATCAAGTAACCGGAGCAACGCCACTTGCTGCCATCCTTACTTTGCCTGCGACAGGTTCTGAGTCAAACATGGGC
GCGGTAATCACTAAAAAAGAAACGCAAGATAAATTGGCGTTTCTAGCACCTGCAGTTCAACCGAAGTTTGCAGTTCTTGA
CCCAGACGTCATGAAGACCTTACCAGAACGTCAACTTATCAATGGTCTTGTGGATGCATGGGTTCACGTTTGTGAGCAAT
ACCTAACACTACCAACAGGCGCAATGGTTCAGGACGGTTACGCAGAAGCACTACTGAAAAACCTTAAAGTACTGGGCGAT
CAGTTCGCAGAGCGCGATAACGACCAATGGCGTGCCAACCTAATGTGGACAGCAAACCAAGCATTGAACGGTCTTATCGG
TAGCGGTGTTCCTCAAGACTGGGCAACACACATGATTGGTCACGAACTAACGGCGCTCTGGCACGTAGACCACGCACGTT
CACTAGCAATAATCCAACCATCACTACTTCGTAACCAAATGCAATTCAAACGCCCTAAGCTTGAGCAAATGGGTCGCAAC
GTGTTTGGCTTAGAAGAAGGTGAAGATTTGGCAGAGCGCACGATTCAAGCGATCGAAGCTTTCTACCATCACCTAGACGT
CGCAACTCAGCTTGAAGGTTACGGTGATGATCGTGAAGCCGCTATTGATTCAGTCATTGCACAGCTATCAAAGCATGGCA
TGACCGTTCTTGGCGAGAACCAAGCGATTGACCTAGAAAACAGTCGAAAAATTCTTGATCTAGCGGTCGCATAA

Upstream 100 bases:

>100_bases
GAGTTCGTCACTCAGTTCCAGAGCAATTCACGCAATTATGTAGGAATAGGCAACAAATTTGCAGAAATCGGCCTACTCAG
TCACTCCAGCACGTACTAAT

Downstream 100 bases:

>100_bases
CGACTCGATCTATCAAATTACTGCCTTTTTTAACGGTATTGTGTCCGCGAAGACACAATACCGTTTTTTTATGGTAATTT
AGCCGCACACTGACAAAGCG

Product: iron-containing alcohol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MHIFTLLTLEARGIIMNFSYVNPTQIFFGQGQIAAIKDAIPDDQKVLVIYGGGSIKKNGVYDQVAQALEGREWLEFSGVE
PNPTKETLDKAVAIVKEQNVDFILAVGGGSVIDGSKYVAASAKYDGDGWDIMVGKHQVTGATPLAAILTLPATGSESNMG
AVITKKETQDKLAFLAPAVQPKFAVLDPDVMKTLPERQLINGLVDAWVHVCEQYLTLPTGAMVQDGYAEALLKNLKVLGD
QFAERDNDQWRANLMWTANQALNGLIGSGVPQDWATHMIGHELTALWHVDHARSLAIIQPSLLRNQMQFKRPKLEQMGRN
VFGLEEGEDLAERTIQAIEAFYHHLDVATQLEGYGDDREAAIDSVIAQLSKHGMTVLGENQAIDLENSRKILDLAVA

Sequences:

>Translated_397_residues
MHIFTLLTLEARGIIMNFSYVNPTQIFFGQGQIAAIKDAIPDDQKVLVIYGGGSIKKNGVYDQVAQALEGREWLEFSGVE
PNPTKETLDKAVAIVKEQNVDFILAVGGGSVIDGSKYVAASAKYDGDGWDIMVGKHQVTGATPLAAILTLPATGSESNMG
AVITKKETQDKLAFLAPAVQPKFAVLDPDVMKTLPERQLINGLVDAWVHVCEQYLTLPTGAMVQDGYAEALLKNLKVLGD
QFAERDNDQWRANLMWTANQALNGLIGSGVPQDWATHMIGHELTALWHVDHARSLAIIQPSLLRNQMQFKRPKLEQMGRN
VFGLEEGEDLAERTIQAIEAFYHHLDVATQLEGYGDDREAAIDSVIAQLSKHGMTVLGENQAIDLENSRKILDLAVA
>Mature_397_residues
MHIFTLLTLEARGIIMNFSYVNPTQIFFGQGQIAAIKDAIPDDQKVLVIYGGGSIKKNGVYDQVAQALEGREWLEFSGVE
PNPTKETLDKAVAIVKEQNVDFILAVGGGSVIDGSKYVAASAKYDGDGWDIMVGKHQVTGATPLAAILTLPATGSESNMG
AVITKKETQDKLAFLAPAVQPKFAVLDPDVMKTLPERQLINGLVDAWVHVCEQYLTLPTGAMVQDGYAEALLKNLKVLGD
QFAERDNDQWRANLMWTANQALNGLIGSGVPQDWATHMIGHELTALWHVDHARSLAIIQPSLLRNQMQFKRPKLEQMGRN
VFGLEEGEDLAERTIQAIEAFYHHLDVATQLEGYGDDREAAIDSVIAQLSKHGMTVLGENQAIDLENSRKILDLAVA

Specific function: NADP-dependent ADH activity [H]

COG id: COG1979

COG function: function code C; Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1789386, Length=386, Percent_Identity=52.3316062176166, Blast_Score=376, Evalue=1e-105,
Organism=Escherichia coli, GI48994951, Length=331, Percent_Identity=25.3776435045317, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789163, Length=358, Percent_Identity=25.1396648044693, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787493, Length=302, Percent_Identity=25.4966887417219, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87082107, Length=237, Percent_Identity=23.6286919831224, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17537053, Length=153, Percent_Identity=32.0261437908497, Blast_Score=69, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6321181, Length=346, Percent_Identity=25.7225433526012, Blast_Score=106, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 43428; Mature: 43428

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIFTLLTLEARGIIMNFSYVNPTQIFFGQGQIAAIKDAIPDDQKVLVIYGGGSIKKNGV
CEEEEEEEEEECEEEEEEECCCCCEEEECCCCEEEHHHCCCCCCEEEEEECCCCCCCCCC
YDQVAQALEGREWLEFSGVEPNPTKETLDKAVAIVKEQNVDFILAVGGGSVIDGSKYVAA
HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHEECCCCEEEEECCCCEECCCCEEEE
SAKYDGDGWDIMVGKHQVTGATPLAAILTLPATGSESNMGAVITKKETQDKLAFLAPAVQ
ECCCCCCCEEEEEECEECCCCCHHHHHEEECCCCCCCCCCEEEECCCCHHHHHHHHCCCC
PKFAVLDPDVMKTLPERQLINGLVDAWVHVCEQYLTLPTGAMVQDGYAEALLKNLKVLGD
CCEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHH
QFAERDNDQWRANLMWTANQALNGLIGSGVPQDWATHMIGHELTALWHVDHARSLAIIQP
HHHHCCCCCEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCCEEEEECH
SLLRNQMQFKRPKLEQMGRNVFGLEEGEDLAERTIQAIEAFYHHLDVATQLEGYGDDREA
HHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AIDSVIAQLSKHGMTVLGENQAIDLENSRKILDLAVA
HHHHHHHHHHHCCCEEECCCCEECCCCCCEEEEEECC
>Mature Secondary Structure
MHIFTLLTLEARGIIMNFSYVNPTQIFFGQGQIAAIKDAIPDDQKVLVIYGGGSIKKNGV
CEEEEEEEEEECEEEEEEECCCCCEEEECCCCEEEHHHCCCCCCEEEEEECCCCCCCCCC
YDQVAQALEGREWLEFSGVEPNPTKETLDKAVAIVKEQNVDFILAVGGGSVIDGSKYVAA
HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHEECCCCEEEEECCCCEECCCCEEEE
SAKYDGDGWDIMVGKHQVTGATPLAAILTLPATGSESNMGAVITKKETQDKLAFLAPAVQ
ECCCCCCCEEEEEECEECCCCCHHHHHEEECCCCCCCCCCEEEECCCCHHHHHHHHCCCC
PKFAVLDPDVMKTLPERQLINGLVDAWVHVCEQYLTLPTGAMVQDGYAEALLKNLKVLGD
CCEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHHHHHH
QFAERDNDQWRANLMWTANQALNGLIGSGVPQDWATHMIGHELTALWHVDHARSLAIIQP
HHHHCCCCCEEEEEEEECHHHHHHHHCCCCCHHHHHHHHHHHHHHEEECCCCCEEEEECH
SLLRNQMQFKRPKLEQMGRNVFGLEEGEDLAERTIQAIEAFYHHLDVATQLEGYGDDREA
HHHHHHHHHCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
AIDSVIAQLSKHGMTVLGENQAIDLENSRKILDLAVA
HHHHHHHHHHHCCCEEECCCCEECCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]