| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
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The map label for this gene is chiD [H]
Identifier: 156977113
GI number: 156977113
Start: 1091317
End: 1093506
Strand: Reverse
Name: chiD [H]
Synonym: VIBHAR_05899
Alternate gene names: 156977113
Gene position: 1093506-1091317 (Counterclockwise)
Preceding gene: 156977116
Following gene: 156977112
Centisome position: 49.61
GC content: 47.26
Gene sequence:
>2190_bases ATGTTAAAACGTAAAGCTCTACAATTAGCAGTATCAGTCGGCATAGCGGCCATGTCGGGCGCTGTTTATGCAAATGGATC GGACATGACGAATCCAGACTCAGGTGTCGTCGTTGGTTATTGGCAAAACTGGTGTGATGGCGGTGGTTATCAAGGTGGTA ATGCGCCTTGCGTGACACTGGATGAGGTAAACCCGATGTACAATATCGTGAATGTGTCATTCATGAAAGTGTACGATGTG GCGGATGGCCGAATTCCAACTTTTAAACTGGACCCAACGGTTGGGCTTTCAGAAGAACAATTTATTGATCAAGTCTCAGA ACTCAACAAGCAAGGTCGCTCTGTACTGTTGGCTTTGGGTGGTGCAGATGCACACGTAGAGCTAGAAACTGGTGATGAGA GAGCTTTTGCTGATGAGATCATTCGTCTTACGGAGCGTTATGGCTTTGATGGTCTAGATATCGACCTAGAGCAAGCGGCC GTCACTGCTGCAAACAACCAAACCGTTATTCCTGACGCACTGAAGCTAGTGAAAGATCACTACCGCGCAGAAGGTAAAAA CTTCCTTATTACTATGGCGCCAGAGTTCCCGTACCTAACGACGGGTGGTAAATATGTTCCTTATATCGATAACTTGGAAG GTTACTACGATTGGATCAACCCGCAGTTTTATAACCAAGGTGGCGACGGCATCTGGGTTGACGGTGTGGGCTGGATTGCT CAAAACAACGATGAGCTAAAAGAAGAGTTCATTTACTACATCTCTGACTCTTTAATCAACGGAACCCGTGGTTTCCATAA GATCCCGCACGATAAGCTTGTGTTTGGTATCCCTTCGAGTATTGACGCAGCAGCAACCGGTTTTGTGAAAGAGCCACAAG ATCTATACGACGCGTTCGATAGTTTAACGGCTCAAGGGCAGCCTTTACGCGGTGTAATGACGTGGTCTATCAACTGGGAT ATGGGCACCAACAAAGCCGGACAAGCATACAACGAACAATTCATTAAAGACTACGGTCCATTTGTTCACGGCCAAGTGAC ACCGCCACCGGTTGAAGGTGAGCCTATGTTGAAAGGTGTTGAGAATACACGTGTTCTTCACGGCACTGTTTTTGACCCGA TGGAAGGCGTGACAGCAACAGATAAAGAAGATGGTGATTTAACCTCATCAATTGATGTTGAAGGTTATGTCGAGACCAGT GTTATTGGAACTTATGTGCTGACTTACCGCGTAAAAGACAGTGATAACAATGAAACAACCAAGGCAAGAACGGTAGAAGT TTACAGCCAAAAACCTGTTTTCGATGGCGTGTCGGATACTACTGTAGTGCTTGGTAACTCATTCGACCCAATGGCGGGTG TTACAGCAAATGATGCTGAAGACGGTGACCTAACAAGTTCAATTATACACACTGGCAGTGTCGATGTGAATGAGATAGGT AACTACACGCTTGTTTACCGAGTAACAGATAGTGCAAATCAAACGGTAACTGCTGAACGTAAAGTGACTGTGACTGACGG TTCGAACTGCGCAGCAGCATGGGATGCTAATACAGTTTATGTCGAAGGTGATCAGGTATCCCACGATGGAGCAACTTGGG TGGCGGGTTGGTACACTCGTGGTGAAGAGCCGGGAACAACTGGTGAGTGGGGCGTTTGGAAGAAAGCGTCAGACAGTTCA TGTGGTGGCAACCCAAGTCCAGGTGGTGACGTAGAACTGAGCGTGTCTGGTCTGCAGTCTGAATACATTCTAGATAATGG CGATGTACGTATTCAGTTCACATTGGCGTCGAATGAAGCGCTTGATGTAATCGCAAAGGTGATCAATAGCGCGGGTTCTG TGGTTGAACAGACCAACGTGAACCTAACTGATAGCCGCACGGTTACGATGGACCTGTATGATGTTACAGAAGGTCAGTAC AAGCTTGAAGTGGTTGGAACAGCGACAGATGGCGAAGTGGTGATGGTGGATAACTCGTTCTCAGTAAAAGAAGAGGGCGG AACAACACCTCCTCCGGGTAACTACCCTCCGTATGCAGCAGGTACTAACTACGAAGCAGGCGACATCGTGGTAGGTAATG ACAATGGTTTGTACGAATGCAAACCTTGGCCTTACACGGCGTGGTGTGCAAGTGCTTCGTATGCGCCGGGCGATAGCCTG TACTGGCAAAATGCTTGGATTAAGCTTTAA
Upstream 100 bases:
>100_bases CATGGCATTTTTAAAAAAAAATAATTCAGGTATGCTGATTTCGATAGTCTTAATTAATAATATCATTAATATAATCTAGA CAAAAAAAGAAGTGAGACTA
Downstream 100 bases:
>100_bases TCTTGCAAAGTATATACGCTACTAAATGTAGCATTAAAAATAAATAAAGGAGAGGCTATATGCCTAATGCCGCTCACTCA AAGTGAGCGGCATTGTTTTT
Product: chitinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MLKRKALQLAVSVGIAAMSGAVYANGSDMTNPDSGVVVGYWQNWCDGGGYQGGNAPCVTLDEVNPMYNIVNVSFMKVYDV ADGRIPTFKLDPTVGLSEEQFIDQVSELNKQGRSVLLALGGADAHVELETGDERAFADEIIRLTERYGFDGLDIDLEQAA VTAANNQTVIPDALKLVKDHYRAEGKNFLITMAPEFPYLTTGGKYVPYIDNLEGYYDWINPQFYNQGGDGIWVDGVGWIA QNNDELKEEFIYYISDSLINGTRGFHKIPHDKLVFGIPSSIDAAATGFVKEPQDLYDAFDSLTAQGQPLRGVMTWSINWD MGTNKAGQAYNEQFIKDYGPFVHGQVTPPPVEGEPMLKGVENTRVLHGTVFDPMEGVTATDKEDGDLTSSIDVEGYVETS VIGTYVLTYRVKDSDNNETTKARTVEVYSQKPVFDGVSDTTVVLGNSFDPMAGVTANDAEDGDLTSSIIHTGSVDVNEIG NYTLVYRVTDSANQTVTAERKVTVTDGSNCAAAWDANTVYVEGDQVSHDGATWVAGWYTRGEEPGTTGEWGVWKKASDSS CGGNPSPGGDVELSVSGLQSEYILDNGDVRIQFTLASNEALDVIAKVINSAGSVVEQTNVNLTDSRTVTMDLYDVTEGQY KLEVVGTATDGEVVMVDNSFSVKEEGGTTPPPGNYPPYAAGTNYEAGDIVVGNDNGLYECKPWPYTAWCASASYAPGDSL YWQNAWIKL
Sequences:
>Translated_729_residues MLKRKALQLAVSVGIAAMSGAVYANGSDMTNPDSGVVVGYWQNWCDGGGYQGGNAPCVTLDEVNPMYNIVNVSFMKVYDV ADGRIPTFKLDPTVGLSEEQFIDQVSELNKQGRSVLLALGGADAHVELETGDERAFADEIIRLTERYGFDGLDIDLEQAA VTAANNQTVIPDALKLVKDHYRAEGKNFLITMAPEFPYLTTGGKYVPYIDNLEGYYDWINPQFYNQGGDGIWVDGVGWIA QNNDELKEEFIYYISDSLINGTRGFHKIPHDKLVFGIPSSIDAAATGFVKEPQDLYDAFDSLTAQGQPLRGVMTWSINWD MGTNKAGQAYNEQFIKDYGPFVHGQVTPPPVEGEPMLKGVENTRVLHGTVFDPMEGVTATDKEDGDLTSSIDVEGYVETS VIGTYVLTYRVKDSDNNETTKARTVEVYSQKPVFDGVSDTTVVLGNSFDPMAGVTANDAEDGDLTSSIIHTGSVDVNEIG NYTLVYRVTDSANQTVTAERKVTVTDGSNCAAAWDANTVYVEGDQVSHDGATWVAGWYTRGEEPGTTGEWGVWKKASDSS CGGNPSPGGDVELSVSGLQSEYILDNGDVRIQFTLASNEALDVIAKVINSAGSVVEQTNVNLTDSRTVTMDLYDVTEGQY KLEVVGTATDGEVVMVDNSFSVKEEGGTTPPPGNYPPYAAGTNYEAGDIVVGNDNGLYECKPWPYTAWCASASYAPGDSL YWQNAWIKL >Mature_729_residues MLKRKALQLAVSVGIAAMSGAVYANGSDMTNPDSGVVVGYWQNWCDGGGYQGGNAPCVTLDEVNPMYNIVNVSFMKVYDV ADGRIPTFKLDPTVGLSEEQFIDQVSELNKQGRSVLLALGGADAHVELETGDERAFADEIIRLTERYGFDGLDIDLEQAA VTAANNQTVIPDALKLVKDHYRAEGKNFLITMAPEFPYLTTGGKYVPYIDNLEGYYDWINPQFYNQGGDGIWVDGVGWIA QNNDELKEEFIYYISDSLINGTRGFHKIPHDKLVFGIPSSIDAAATGFVKEPQDLYDAFDSLTAQGQPLRGVMTWSINWD MGTNKAGQAYNEQFIKDYGPFVHGQVTPPPVEGEPMLKGVENTRVLHGTVFDPMEGVTATDKEDGDLTSSIDVEGYVETS VIGTYVLTYRVKDSDNNETTKARTVEVYSQKPVFDGVSDTTVVLGNSFDPMAGVTANDAEDGDLTSSIIHTGSVDVNEIG NYTLVYRVTDSANQTVTAERKVTVTDGSNCAAAWDANTVYVEGDQVSHDGATWVAGWYTRGEEPGTTGEWGVWKKASDSS CGGNPSPGGDVELSVSGLQSEYILDNGDVRIQFTLASNEALDVIAKVINSAGSVVEQTNVNLTDSRTVTMDLYDVTEGQY KLEVVGTATDGEVVMVDNSFSVKEEGGTTPPPGNYPPYAAGTNYEAGDIVVGNDNGLYECKPWPYTAWCASASYAPGDSL YWQNAWIKL
Specific function: Unknown
COG id: COG3469
COG function: function code G; Chitinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fibronectin type-III domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR001223 - InterPro: IPR001579 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR015520 [H]
Pfam domain/function: PF02839 CBM_5_12; PF00041 fn3; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 78987; Mature: 78987
Theoretical pI: Translated: 3.99; Mature: 3.99
Prosite motif: PS01095 CHITINASE_18
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKRKALQLAVSVGIAAMSGAVYANGSDMTNPDSGVVVGYWQNWCDGGGYQGGNAPCVTL CCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEE DEVNPMYNIVNVSFMKVYDVADGRIPTFKLDPTVGLSEEQFIDQVSELNKQGRSVLLALG CCCCCCEEEEEEEEEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEC GADAHVELETGDERAFADEIIRLTERYGFDGLDIDLEQAAVTAANNQTVIPDALKLVKDH CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEHHHHEEEECCCCEECHHHHHHHHHH YRAEGKNFLITMAPEFPYLTTGGKYVPYIDNLEGYYDWINPQFYNQGGDGIWVDGVGWIA HHCCCCEEEEEECCCCCEEECCCEECCEECCCCCCEECCCCEEECCCCCEEEECCEEEEE QNNDELKEEFIYYISDSLINGTRGFHKIPHDKLVFGIPSSIDAAATGFVKEPQDLYDAFD CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHCCCCCCHHHHHHHHH SLTAQGQPLRGVMTWSINWDMGTNKAGQAYNEQFIKDYGPFVHGQVTPPPVEGEPMLKGV HHCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCHHHCCC ENTRVLHGTVFDPMEGVTATDKEDGDLTSSIDVEGYVETSVIGTYVLTYRVKDSDNNETT CCCEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCEEEHEEEEEEEEEEEEECCCCCCCC KARTVEVYSQKPVFDGVSDTTVVLGNSFDPMAGVTANDAEDGDLTSSIIHTGSVDVNEIG EEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHEECCCCCHHHCC NYTLVYRVTDSANQTVTAERKVTVTDGSNCAAAWDANTVYVEGDQVSHDGATWVAGWYTR CEEEEEEEECCCCCEEEECEEEEEECCCCEEEEECCCEEEEECCEECCCCCEEEEEEEEC GEEPGTTGEWGVWKKASDSSCGGNPSPGGDVELSVSGLQSEYILDNGDVRIQFTLASNEA CCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCEEEEEEECCCCH LDVIAKVINSAGSVVEQTNVNLTDSRTVTMDLYDVTEGQYKLEVVGTATDGEVVMVDNSF HHHHHHHHHHCCCEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCEEEEEECCC SVKEEGGTTPPPGNYPPYAAGTNYEAGDIVVGNDNGLYECKPWPYTAWCASASYAPGDSL EEHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCEECCCCCCCCCCE YWQNAWIKL EEECEEEEC >Mature Secondary Structure MLKRKALQLAVSVGIAAMSGAVYANGSDMTNPDSGVVVGYWQNWCDGGGYQGGNAPCVTL CCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEE DEVNPMYNIVNVSFMKVYDVADGRIPTFKLDPTVGLSEEQFIDQVSELNKQGRSVLLALG CCCCCCEEEEEEEEEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEC GADAHVELETGDERAFADEIIRLTERYGFDGLDIDLEQAAVTAANNQTVIPDALKLVKDH CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEHHHHEEEECCCCEECHHHHHHHHHH YRAEGKNFLITMAPEFPYLTTGGKYVPYIDNLEGYYDWINPQFYNQGGDGIWVDGVGWIA HHCCCCEEEEEECCCCCEEECCCEECCEECCCCCCEECCCCEEECCCCCEEEECCEEEEE QNNDELKEEFIYYISDSLINGTRGFHKIPHDKLVFGIPSSIDAAATGFVKEPQDLYDAFD CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHHCCCCCCHHHHHHHHH SLTAQGQPLRGVMTWSINWDMGTNKAGQAYNEQFIKDYGPFVHGQVTPPPVEGEPMLKGV HHCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCEECCCCCCCCCCCCHHHCCC ENTRVLHGTVFDPMEGVTATDKEDGDLTSSIDVEGYVETSVIGTYVLTYRVKDSDNNETT CCCEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCEEEHEEEEEEEEEEEEECCCCCCCC KARTVEVYSQKPVFDGVSDTTVVLGNSFDPMAGVTANDAEDGDLTSSIIHTGSVDVNEIG EEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHEECCCCCHHHCC NYTLVYRVTDSANQTVTAERKVTVTDGSNCAAAWDANTVYVEGDQVSHDGATWVAGWYTR CEEEEEEEECCCCCEEEECEEEEEECCCCEEEEECCCEEEEECCEECCCCCEEEEEEEEC GEEPGTTGEWGVWKKASDSSCGGNPSPGGDVELSVSGLQSEYILDNGDVRIQFTLASNEA CCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCEEEEEEECCCCH LDVIAKVINSAGSVVEQTNVNLTDSRTVTMDLYDVTEGQYKLEVVGTATDGEVVMVDNSF HHHHHHHHHHCCCEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCEEEEEECCC SVKEEGGTTPPPGNYPPYAAGTNYEAGDIVVGNDNGLYECKPWPYTAWCASASYAPGDSL EEHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCEECCCCCCCCCCE YWQNAWIKL EEECEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1729234 [H]