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The map label for this gene is fimZ [H]

Identifier: 156977108

GI number: 156977108

Start: 1086845

End: 1087453

Strand: Direct

Name: fimZ [H]

Synonym: VIBHAR_05894

Alternate gene names: 156977108

Gene position: 1086845-1087453 (Clockwise)

Preceding gene: 156977107

Following gene: 156977114

Centisome position: 49.31

GC content: 43.19

Gene sequence:

>609_bases
ATGAATAACGTTCTTATTATCGACGACCAGCCGCTATATAGTGAAGCGCTTGCTTCTCTTGTTCAAACCGCTTTCCAATC
TGTTAACGTCGTAGAGTCAACAGACAGCGCTGAAGTGATGGATATCGTTCGTAACCAACCTGTCGATTTGGTTATTTTAG
ATGTCGTACTGGGTGACCGAGACGGTATGCGCCTAGCGAAAAATATATTAGCGACGGGTTACCAAGGTAAGATTTTGTTT
ATTTCTTCTCGCGATTATTCGAGCTTGTCTAAAGCGGCATTTGAAATGGGTGCACATGGCTTTTTGAATAAAAACGAAGC
GAAAGCAACCATTCTGGATGCTATTGTTAGCGTGACGCGTGGGTATTCCGTGTTTAAAGCGACGCATAACCAATCATCGG
GTAGCGTCACTTTATCGAATCGTGAAGCGATGGTATTTCACTATCTCGCTCAAGGTTACTCGAACAAGAAGATCTCAGAG
CAACTGTCATTGAGCGCTAAAACCATCAGTACTTACAAAACTCGTATCTTGAAGAAATATCATGCTGAGTCAGTGGTCGA
ACTACTGAACACACTTCCTCAAGAAGAATGCGGAAGCCTTTGCTGTTAG

Upstream 100 bases:

>100_bases
TTTTCACCCATTACCCACAGATTTTTCCTACAATCCGACTCCATTAAAGAGTGCTGAAAGGAAGCGGCAAGTAAATTGAA
ACATAAGGTGAGGCACAAAT

Downstream 100 bases:

>100_bases
CCGCTCTTCAAAATAACACGACTAAGAGCCTATCCCAAAAGGGATTTATTCCAAACAATGAGGCCACAAGCAAAATGCAA
CATGGCCTCGTAGTTTTCGA

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MNNVLIIDDQPLYSEALASLVQTAFQSVNVVESTDSAEVMDIVRNQPVDLVILDVVLGDRDGMRLAKNILATGYQGKILF
ISSRDYSSLSKAAFEMGAHGFLNKNEAKATILDAIVSVTRGYSVFKATHNQSSGSVTLSNREAMVFHYLAQGYSNKKISE
QLSLSAKTISTYKTRILKKYHAESVVELLNTLPQEECGSLCC

Sequences:

>Translated_202_residues
MNNVLIIDDQPLYSEALASLVQTAFQSVNVVESTDSAEVMDIVRNQPVDLVILDVVLGDRDGMRLAKNILATGYQGKILF
ISSRDYSSLSKAAFEMGAHGFLNKNEAKATILDAIVSVTRGYSVFKATHNQSSGSVTLSNREAMVFHYLAQGYSNKKISE
QLSLSAKTISTYKTRILKKYHAESVVELLNTLPQEECGSLCC
>Mature_202_residues
MNNVLIIDDQPLYSEALASLVQTAFQSVNVVESTDSAEVMDIVRNQPVDLVILDVVLGDRDGMRLAKNILATGYQGKILF
ISSRDYSSLSKAAFEMGAHGFLNKNEAKATILDAIVSVTRGYSVFKATHNQSSGSVTLSNREAMVFHYLAQGYSNKKISE
QLSLSAKTISTYKTRILKKYHAESVVELLNTLPQEECGSLCC

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=199, Percent_Identity=33.1658291457286, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788712, Length=204, Percent_Identity=29.4117647058824, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788521, Length=194, Percent_Identity=28.8659793814433, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788222, Length=201, Percent_Identity=26.3681592039801, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790102, Length=191, Percent_Identity=27.2251308900524, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22149; Mature: 22149

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNVLIIDDQPLYSEALASLVQTAFQSVNVVESTDSAEVMDIVRNQPVDLVILDVVLGDR
CCCEEEEECCCHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHCCCCCEEEEEEECCCC
DGMRLAKNILATGYQGKILFISSRDYSSLSKAAFEMGAHGFLNKNEAKATILDAIVSVTR
CCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
GYSVFKATHNQSSGSVTLSNREAMVFHYLAQGYSNKKISEQLSLSAKTISTYKTRILKKY
CHHHEEECCCCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HAESVVELLNTLPQEECGSLCC
HHHHHHHHHHHCCHHHHCCCCC
>Mature Secondary Structure
MNNVLIIDDQPLYSEALASLVQTAFQSVNVVESTDSAEVMDIVRNQPVDLVILDVVLGDR
CCCEEEEECCCHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHCCCCCEEEEEEECCCC
DGMRLAKNILATGYQGKILFISSRDYSSLSKAAFEMGAHGFLNKNEAKATILDAIVSVTR
CCHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC
GYSVFKATHNQSSGSVTLSNREAMVFHYLAQGYSNKKISEQLSLSAKTISTYKTRILKKY
CHHHEEECCCCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
HAESVVELLNTLPQEECGSLCC
HHHHHHHHHHHCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360005; 11677609 [H]