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The map label for this gene is sgrR [H]

Identifier: 156977027

GI number: 156977027

Start: 998788

End: 1000494

Strand: Reverse

Name: sgrR [H]

Synonym: VIBHAR_05812

Alternate gene names: 156977027

Gene position: 1000494-998788 (Counterclockwise)

Preceding gene: 156977028

Following gene: 156977026

Centisome position: 45.39

GC content: 48.1

Gene sequence:

>1707_bases
ATGAGTAGCCCTCGTTTACGCGTTCAGTTCGAAACGCTGTTTGAAAAGTTCTCTGGTAATGACACGGAAGTGCAACTCGA
AGACATTACCGAAGCACTCTTTTGTACCCGCCGCAACGCTCGAATCGTTCTTAATAAGTTAGAAGAAGAAGGCTGGATCG
AATGGCATCCTGCCGCAGGTCGCGGAAAACTCTCTAAACTGGTTTTTAAGCGCAATCGTAGTGATGTCAGTGAAAACCTT
GCACGTCGTTACTTGGACGAAGGCAAAATCGGGCAGGCGTTAGAGGCGTTGGATAATGACGCAGCTAAACTCACTCAAGT
GATTCAAGGCTACCTCGGCTTACAACACCGTCAAGGCGAGCAGGTCGTCCGTTTGCCTTACTATCGTCCACTTGCGATGT
TGAACCCGCAAAAGCCGATGCGCCGTTCAGAGCAGCATATTGCGCGCCAAGTGTTTAGTGGCTTAACTAAGCTGGATGAC
AATGAGCAACTTCAACCAGACCTTGCCCATTATTGGGAAGCGCTCTCAGATACCCATTGGCGTTTTTACTTACGCCGTGG
TGTTCGTTTCCATAATGGGGAACTGCTCACGACAGATTGCGTGATTGAAAGCATCAGCGTATTAGGCGAATTGAATCTAT
TCTCACACATCGAAAAAGTCGTTTCGCCTGAACCTTGGATAGTGGATATTCATCTTGTTCGTCCTGATAAGTACCTGCCG
CTTGCTCTGAGTGAGTCTCAAGCCAAAGTCCTGTTGCCAAACAATATGCGCGCGGAAGAGTTTGATAGAAAGCCAGTAGG
AACTGGGCCGTTTCAAGTGAAAGTCAACGATGACAAACGTTTAATTTTGACGGCATTCGATGGCTACTTCGGGCTACGTC
CGCTCTTGGATCAAGTCGAGGTATGGGTGATCGACGAAGCATACTCCTCGATGGTGTATCCAAGCCTGACCAAACCACAA
ATGGACAAACAAGCGTCGACGGACGAAGTTGAGCTCGATCCGGGCTGTACATTCTTATTACTGAATAAAAATACAGGTAT
TGCGAGAGACCCGCGTTGGGCGGAGTTTTTAAGCCAAACACTGAACAGTTACCAAGTGTATGCCCATGTGCCTCAAGACA
AGGTAATCGAGCTCGGCGTTCTGCAAGCGTTTGGTCTAAAGCCGGGCTGGATAGACCTTAGGCCGACCATTGCCGGTGAA
GCCCCTCAGAAAGACAAAGCCATTTGTGTTGCTTATCAAAAGAAGCATCCGATGTTTCCGGTCATCGCAAAGGCGATTAG
AACCTTATTAAAACCTCATGGTATTGATGTTGAATTTATTCGCTATGACACGCAACCTCCATCACCAGAAGAGGTCGATA
TCTGGATTAAAGCAATGGGGATTGCCACTAACCGTAACGATGCGTTAGCTGGATGGCTGCTGGATTACAGCGACATCGAC
AAGTTTAGTGCAGGTTATGATTTCTCTGGTTGGGCTGGGCTGGTGGACCAATGGCGAGCAGGGCAACATGCTGATTTCCC
CGCTCGAGAATTGGGAAGGCAACTTGTGAAAAGCTGCCAGGTGATCCCAATGTTCCACTGTTGGTTAGGCGTAAACAAAG
ACCACAGCGGTGCACTACAGAATGCCAAGTGCAATGCCCTTGGTTGGTTTGATTTCAGCAACGTGTGGGTAAAACCAAAA
ATAGAGCAAGATGGCGAAACCGAATAA

Upstream 100 bases:

>100_bases
ATTGGTATCGACATTCAATAATTTGTACGTCGGAGTTTGCACTTTCCGTAAAAAATGAGGAAACTTAGTTTATCGTTATG
AAAACTAAAATTTCCTCTTT

Downstream 100 bases:

>100_bases
GAAACAACCGACCAAAACGGTCGAGATATATTGTGCGAAATGTAAGACGCAGCTGTTTAAATATCGAAAAGGCGGCAAAG
GCGCGCTGGTGAAGTGTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 568; Mature: 567

Protein sequence:

>568_residues
MSSPRLRVQFETLFEKFSGNDTEVQLEDITEALFCTRRNARIVLNKLEEEGWIEWHPAAGRGKLSKLVFKRNRSDVSENL
ARRYLDEGKIGQALEALDNDAAKLTQVIQGYLGLQHRQGEQVVRLPYYRPLAMLNPQKPMRRSEQHIARQVFSGLTKLDD
NEQLQPDLAHYWEALSDTHWRFYLRRGVRFHNGELLTTDCVIESISVLGELNLFSHIEKVVSPEPWIVDIHLVRPDKYLP
LALSESQAKVLLPNNMRAEEFDRKPVGTGPFQVKVNDDKRLILTAFDGYFGLRPLLDQVEVWVIDEAYSSMVYPSLTKPQ
MDKQASTDEVELDPGCTFLLLNKNTGIARDPRWAEFLSQTLNSYQVYAHVPQDKVIELGVLQAFGLKPGWIDLRPTIAGE
APQKDKAICVAYQKKHPMFPVIAKAIRTLLKPHGIDVEFIRYDTQPPSPEEVDIWIKAMGIATNRNDALAGWLLDYSDID
KFSAGYDFSGWAGLVDQWRAGQHADFPARELGRQLVKSCQVIPMFHCWLGVNKDHSGALQNAKCNALGWFDFSNVWVKPK
IEQDGETE

Sequences:

>Translated_568_residues
MSSPRLRVQFETLFEKFSGNDTEVQLEDITEALFCTRRNARIVLNKLEEEGWIEWHPAAGRGKLSKLVFKRNRSDVSENL
ARRYLDEGKIGQALEALDNDAAKLTQVIQGYLGLQHRQGEQVVRLPYYRPLAMLNPQKPMRRSEQHIARQVFSGLTKLDD
NEQLQPDLAHYWEALSDTHWRFYLRRGVRFHNGELLTTDCVIESISVLGELNLFSHIEKVVSPEPWIVDIHLVRPDKYLP
LALSESQAKVLLPNNMRAEEFDRKPVGTGPFQVKVNDDKRLILTAFDGYFGLRPLLDQVEVWVIDEAYSSMVYPSLTKPQ
MDKQASTDEVELDPGCTFLLLNKNTGIARDPRWAEFLSQTLNSYQVYAHVPQDKVIELGVLQAFGLKPGWIDLRPTIAGE
APQKDKAICVAYQKKHPMFPVIAKAIRTLLKPHGIDVEFIRYDTQPPSPEEVDIWIKAMGIATNRNDALAGWLLDYSDID
KFSAGYDFSGWAGLVDQWRAGQHADFPARELGRQLVKSCQVIPMFHCWLGVNKDHSGALQNAKCNALGWFDFSNVWVKPK
IEQDGETE
>Mature_567_residues
SSPRLRVQFETLFEKFSGNDTEVQLEDITEALFCTRRNARIVLNKLEEEGWIEWHPAAGRGKLSKLVFKRNRSDVSENLA
RRYLDEGKIGQALEALDNDAAKLTQVIQGYLGLQHRQGEQVVRLPYYRPLAMLNPQKPMRRSEQHIARQVFSGLTKLDDN
EQLQPDLAHYWEALSDTHWRFYLRRGVRFHNGELLTTDCVIESISVLGELNLFSHIEKVVSPEPWIVDIHLVRPDKYLPL
ALSESQAKVLLPNNMRAEEFDRKPVGTGPFQVKVNDDKRLILTAFDGYFGLRPLLDQVEVWVIDEAYSSMVYPSLTKPQM
DKQASTDEVELDPGCTFLLLNKNTGIARDPRWAEFLSQTLNSYQVYAHVPQDKVIELGVLQAFGLKPGWIDLRPTIAGEA
PQKDKAICVAYQKKHPMFPVIAKAIRTLLKPHGIDVEFIRYDTQPPSPEEVDIWIKAMGIATNRNDALAGWLLDYSDIDK
FSAGYDFSGWAGLVDQWRAGQHADFPARELGRQLVKSCQVIPMFHCWLGVNKDHSGALQNAKCNALGWFDFSNVWVKPKI
EQDGETE

Specific function: Activates the small RNA gene sgrS under glucose- phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding

COG id: COG4533

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786256, Length=566, Percent_Identity=33.0388692579505, Blast_Score=310, Evalue=1e-85,
Organism=Escherichia coli, GI1786650, Length=351, Percent_Identity=29.9145299145299, Blast_Score=155, Evalue=9e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 64826; Mature: 64694

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSPRLRVQFETLFEKFSGNDTEVQLEDITEALFCTRRNARIVLNKLEEEGWIEWHPAAG
CCCCCEEEEHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCEEEEEHHCCCCCEEEECCCC
RGKLSKLVFKRNRSDVSENLARRYLDEGKIGQALEALDNDAAKLTQVIQGYLGLQHRQGE
CCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
QVVRLPYYRPLAMLNPQKPMRRSEQHIARQVFSGLTKLDDNEQLQPDLAHYWEALSDTHW
CEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHH
RFYLRRGVRFHNGELLTTDCVIESISVLGELNLFSHIEKVVSPEPWIVDIHLVRPDKYLP
HHHHHHCCEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEE
LALSESQAKVLLPNNMRAEEFDRKPVGTGPFQVKVNDDKRLILTAFDGYFGLRPLLDQVE
EEECCCCCEEECCCCCCHHHHCCCCCCCCCEEEEECCCCEEEEEEECCCCCHHHHHCCCE
VWVIDEAYSSMVYPSLTKPQMDKQASTDEVELDPGCTFLLLNKNTGIARDPRWAEFLSQT
EEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCCCHHHHHHHHH
LNSYQVYAHVPQDKVIELGVLQAFGLKPGWIDLRPTIAGEAPQKDKAICVAYQKKHPMFP
HCCEEEEEECCCCHHEEEHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCHH
VIAKAIRTLLKPHGIDVEFIRYDTQPPSPEEVDIWIKAMGIATNRNDALAGWLLDYSDID
HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCCCEEEEEECHHHHH
KFSAGYDFSGWAGLVDQWRAGQHADFPARELGRQLVKSCQVIPMFHCWLGVNKDHSGALQ
HHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEHCCCCCCCCCCCC
NAKCNALGWFDFSNVWVKPKIEQDGETE
CCCCCEEEEECCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
SSPRLRVQFETLFEKFSGNDTEVQLEDITEALFCTRRNARIVLNKLEEEGWIEWHPAAG
CCCCEEEEHHHHHHHHCCCCCEEEHHHHHHHHHHCCCCCEEEEEHHCCCCCEEEECCCC
RGKLSKLVFKRNRSDVSENLARRYLDEGKIGQALEALDNDAAKLTQVIQGYLGLQHRQGE
CCHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
QVVRLPYYRPLAMLNPQKPMRRSEQHIARQVFSGLTKLDDNEQLQPDLAHYWEALSDTHW
CEEECCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHH
RFYLRRGVRFHNGELLTTDCVIESISVLGELNLFSHIEKVVSPEPWIVDIHLVRPDKYLP
HHHHHHCCEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEE
LALSESQAKVLLPNNMRAEEFDRKPVGTGPFQVKVNDDKRLILTAFDGYFGLRPLLDQVE
EEECCCCCEEECCCCCCHHHHCCCCCCCCCEEEEECCCCEEEEEEECCCCCHHHHHCCCE
VWVIDEAYSSMVYPSLTKPQMDKQASTDEVELDPGCTFLLLNKNTGIARDPRWAEFLSQT
EEEEEHHHHHHCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCCCHHHHHHHHH
LNSYQVYAHVPQDKVIELGVLQAFGLKPGWIDLRPTIAGEAPQKDKAICVAYQKKHPMFP
HCCEEEEEECCCCHHEEEHHHHHHCCCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCHH
VIAKAIRTLLKPHGIDVEFIRYDTQPPSPEEVDIWIKAMGIATNRNDALAGWLLDYSDID
HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCCCEEEEEECHHHHH
KFSAGYDFSGWAGLVDQWRAGQHADFPARELGRQLVKSCQVIPMFHCWLGVNKDHSGALQ
HHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEEEEHCCCCCCCCCCCC
NAKCNALGWFDFSNVWVKPKIEQDGETE
CCCCCEEEEECCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA