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The map label for this gene is yciR [C]

Identifier: 156977019

GI number: 156977019

Start: 992103

End: 994013

Strand: Direct

Name: yciR [C]

Synonym: VIBHAR_05804

Alternate gene names: 156977019

Gene position: 992103-994013 (Clockwise)

Preceding gene: 156977018

Following gene: 156977020

Centisome position: 45.01

GC content: 44.01

Gene sequence:

>1911_bases
ATGGGTACATTACAAACACTAGATTACGAGATACCCGAATCGATGCGGAGAAGTTGGCAAAATATCGTCAACCTCTTAGC
ACGCATTGCCGATGTACCCACTACACTGATCATGCGCATACATCCCGATTACATAGAAGTAAACACCACTAGCGAAACCG
AAAATAACCCTTACCAAGTTGGCGACAAAGAAAAACTAGGACACGGTCTTTACTGTGAACACGTTATCGAAAACAAATGT
GGGCTGTTGATCCCTAATGCACTGATTGACGAGAATTGGAAAGATAACCCGGACATCAAGCTCGGAATGATCTCTTATTG
CGGGCTGCCGCTGTATTGGCCGAACGGAGAAACCTTCGGCACTATCTGCATGTTGGATGCGAAAGAAAACCAGTACAACG
ACACCTACAGAGAGCTTCTTTCCTCTTTCAAAGAGTCTATCGAAGCTCAGCTTGCCGTCGTTTTTCAACAACATAAGCTT
GTCCGCTTGAATAACGAACTTAAAAACCGAGTTGAAACCCGCACTACTGACCTTGCACAGCTTAGTTACTCGTTGACAAG
AGAGATAGACCGCCGTAAAGCCGCCGAAAAGCAAGTCAGTTATCAGCAGACTCATGATCAAGGGACAGGCTTTTTGAATC
GAGCAGCACTCGAACAAGTGTTAGACCAAACCTTAGATGGCATTGATACTGAACAACACTCTTTGGTGGTGATTAATGTC
GGCTTTAGCAACGCTCGAAGCATACAAACGAAATACGGCTTCGAAGCCTTTGACGAGGTATTGAAAGAGTTTCGCTTTCG
CCTTGGCCACACCGAATCCAGCTATTTTGTCACAGGAAGACCAAGCTCTAACGACGTCGTTATCATCGTTACCGGCGAAA
ACATAGAAACGAAAGTACAGCACCTCCTCGACGACATTAATCATGTCAGTTTGGGTAATTTTTTTATTGAGGACAACGAA
GTCCACCTCAATTCTTATGTGGGTGTAGTTCAAGCCCACAAAAACAGTTATGGGAAGCAACTACTGCAAAATGCGTGTTA
TGCAATGTTGCTGTGTAAAGAGTCGGGCGAATCTTATCGCTACCTCTGTGAAAGTCAGTCTCAAGATATTAGTGACCATA
ACAAACTCGAGAGCTACTTGCTGCAAGCGGTTCGTAACGATGACTTAATGCTGTACTACCAACCGAAGGTTCTTCCACAT
AACCATAAATGGATTGGCGCTGAGGCATTACTTCGTTGGCGCCATCCGGTGCTGGGCGATGTCTCTAATGAAGCCCTAAT
TCACATGGCCGAGCAAAATGGTCTGATCTTTGAGGTCGGTTCGTTTGTCCTTCGCACTGCAATAGATAAAGCTAAGCAAT
GGTCTGAGCTGGTGGATAACTTTAAGATTGCCGTGAATGTCTCACCTATCCAATTGCAAAACGTTAACTTCGCAGAGCAA
ATTGAACACCTATTAGATACCTTTCACCTACCCGCGCACTTCCTCGAGCTGGAAGTCACCGAGAGCGCGCTCATTGCTGA
TGAGGTTGTTGCACGTAATACATTGAATAAACTACACGAACTTGGTGTGACATTGTCACTCGATGACTTCGGGACGGGTT
ATGCCTCTTTCAGTTATTTGAAAAAATACCCGTTTGATGCGATTAAAGTTGATAAAAGCTTTGTTCAGCAAATGGAAAAA
TCTGACGACGACAAAGCCATCATCTGTTCTATCATCCACATCGCCAAAAAACTGGAACTTCAAGTGGTCATTGAAGGGAT
TGAGTCCACTCAACAAGAGCAATTTTTGATTGGTGAAGGCTGCGATATTGGACAAGGCTTTTTGTACGGTAAGCCAATGC
CTTGCAATGAATTTGAACAAAGTTTGTTTAATCAAAACCTATTAGGTGGACAATACACCTATTCTTCCTAA

Upstream 100 bases:

>100_bases
CTTGATCTAGTCGAGGATTTAAATGATGTGTACATCTGTCTACAAATAGAAAAATGATACTTGTTCACAGGGTGTGGGCC
GACGGCAAAGGACTGCTTTT

Downstream 100 bases:

>100_bases
GCATTTCCTTTACTCTGCTGGCGGTGGTTTCTATAATCGCCGCCCGCTTCCAATAAAAAGGCCATTATCTTCATGGATCA
GTTGACTGCCACGCTTAAGA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 636; Mature: 635

Protein sequence:

>636_residues
MGTLQTLDYEIPESMRRSWQNIVNLLARIADVPTTLIMRIHPDYIEVNTTSETENNPYQVGDKEKLGHGLYCEHVIENKC
GLLIPNALIDENWKDNPDIKLGMISYCGLPLYWPNGETFGTICMLDAKENQYNDTYRELLSSFKESIEAQLAVVFQQHKL
VRLNNELKNRVETRTTDLAQLSYSLTREIDRRKAAEKQVSYQQTHDQGTGFLNRAALEQVLDQTLDGIDTEQHSLVVINV
GFSNARSIQTKYGFEAFDEVLKEFRFRLGHTESSYFVTGRPSSNDVVIIVTGENIETKVQHLLDDINHVSLGNFFIEDNE
VHLNSYVGVVQAHKNSYGKQLLQNACYAMLLCKESGESYRYLCESQSQDISDHNKLESYLLQAVRNDDLMLYYQPKVLPH
NHKWIGAEALLRWRHPVLGDVSNEALIHMAEQNGLIFEVGSFVLRTAIDKAKQWSELVDNFKIAVNVSPIQLQNVNFAEQ
IEHLLDTFHLPAHFLELEVTESALIADEVVARNTLNKLHELGVTLSLDDFGTGYASFSYLKKYPFDAIKVDKSFVQQMEK
SDDDKAIICSIIHIAKKLELQVVIEGIESTQQEQFLIGEGCDIGQGFLYGKPMPCNEFEQSLFNQNLLGGQYTYSS

Sequences:

>Translated_636_residues
MGTLQTLDYEIPESMRRSWQNIVNLLARIADVPTTLIMRIHPDYIEVNTTSETENNPYQVGDKEKLGHGLYCEHVIENKC
GLLIPNALIDENWKDNPDIKLGMISYCGLPLYWPNGETFGTICMLDAKENQYNDTYRELLSSFKESIEAQLAVVFQQHKL
VRLNNELKNRVETRTTDLAQLSYSLTREIDRRKAAEKQVSYQQTHDQGTGFLNRAALEQVLDQTLDGIDTEQHSLVVINV
GFSNARSIQTKYGFEAFDEVLKEFRFRLGHTESSYFVTGRPSSNDVVIIVTGENIETKVQHLLDDINHVSLGNFFIEDNE
VHLNSYVGVVQAHKNSYGKQLLQNACYAMLLCKESGESYRYLCESQSQDISDHNKLESYLLQAVRNDDLMLYYQPKVLPH
NHKWIGAEALLRWRHPVLGDVSNEALIHMAEQNGLIFEVGSFVLRTAIDKAKQWSELVDNFKIAVNVSPIQLQNVNFAEQ
IEHLLDTFHLPAHFLELEVTESALIADEVVARNTLNKLHELGVTLSLDDFGTGYASFSYLKKYPFDAIKVDKSFVQQMEK
SDDDKAIICSIIHIAKKLELQVVIEGIESTQQEQFLIGEGCDIGQGFLYGKPMPCNEFEQSLFNQNLLGGQYTYSS
>Mature_635_residues
GTLQTLDYEIPESMRRSWQNIVNLLARIADVPTTLIMRIHPDYIEVNTTSETENNPYQVGDKEKLGHGLYCEHVIENKCG
LLIPNALIDENWKDNPDIKLGMISYCGLPLYWPNGETFGTICMLDAKENQYNDTYRELLSSFKESIEAQLAVVFQQHKLV
RLNNELKNRVETRTTDLAQLSYSLTREIDRRKAAEKQVSYQQTHDQGTGFLNRAALEQVLDQTLDGIDTEQHSLVVINVG
FSNARSIQTKYGFEAFDEVLKEFRFRLGHTESSYFVTGRPSSNDVVIIVTGENIETKVQHLLDDINHVSLGNFFIEDNEV
HLNSYVGVVQAHKNSYGKQLLQNACYAMLLCKESGESYRYLCESQSQDISDHNKLESYLLQAVRNDDLMLYYQPKVLPHN
HKWIGAEALLRWRHPVLGDVSNEALIHMAEQNGLIFEVGSFVLRTAIDKAKQWSELVDNFKIAVNVSPIQLQNVNFAEQI
EHLLDTFHLPAHFLELEVTESALIADEVVARNTLNKLHELGVTLSLDDFGTGYASFSYLKKYPFDAIKVDKSFVQQMEKS
DDDKAIICSIIHIAKKLELQVVIEGIESTQQEQFLIGEGCDIGQGFLYGKPMPCNEFEQSLFNQNLLGGQYTYSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=439, Percent_Identity=27.7904328018223, Blast_Score=199, Evalue=5e-52,
Organism=Escherichia coli, GI87081921, Length=455, Percent_Identity=27.4725274725275, Blast_Score=166, Evalue=4e-42,
Organism=Escherichia coli, GI226510982, Length=310, Percent_Identity=31.9354838709677, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1786507, Length=270, Percent_Identity=31.8518518518519, Blast_Score=147, Evalue=3e-36,
Organism=Escherichia coli, GI1788502, Length=353, Percent_Identity=26.628895184136, Blast_Score=145, Evalue=8e-36,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=33.0645161290323, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI87081845, Length=275, Percent_Identity=32.3636363636364, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87081980, Length=234, Percent_Identity=32.0512820512821, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=33.8912133891213, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1788849, Length=262, Percent_Identity=30.9160305343511, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=29.0983606557377, Blast_Score=106, Evalue=5e-24,
Organism=Escherichia coli, GI87082096, Length=342, Percent_Identity=24.5614035087719, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1787410, Length=152, Percent_Identity=28.9473684210526, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 72433; Mature: 72301

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTLQTLDYEIPESMRRSWQNIVNLLARIADVPTTLIMRIHPDYIEVNTTSETENNPYQV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCC
GDKEKLGHGLYCEHVIENKCGLLIPNALIDENWKDNPDIKLGMISYCGLPLYWPNGETFG
CCHHHCCCCCHHHHHHCCCCCEEECHHHHCCCCCCCCCEEEEEHHHCCCEEECCCCCCEE
TICMLDAKENQYNDTYRELLSSFKESIEAQLAVVFQQHKLVRLNNELKNRVETRTTDLAQ
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSYSLTREIDRRKAAEKQVSYQQTHDQGTGFLNRAALEQVLDQTLDGIDTEQHSLVVINV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
GFSNARSIQTKYGFEAFDEVLKEFRFRLGHTESSYFVTGRPSSNDVVIIVTGENIETKVQ
CCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEECCCHHHHHH
HLLDDINHVSLGNFFIEDNEVHLNSYVGVVQAHKNSYGKQLLQNACYAMLLCKESGESYR
HHHHHCCEEECCCEEEECCEEEECHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHH
YLCESQSQDISDHNKLESYLLQAVRNDDLMLYYQPKVLPHNHKWIGAEALLRWRHPVLGD
HHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECHHHHHHHCCCCCCC
VSNEALIHMAEQNGLIFEVGSFVLRTAIDKAKQWSELVDNFKIAVNVSPIQLQNVNFAEQ
CCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEEECCCHHHH
IEHLLDTFHLPAHFLELEVTESALIADEVVARNTLNKLHELGVTLSLDDFGTGYASFSYL
HHHHHHHHCCCHHHEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
KKYPFDAIKVDKSFVQQMEKSDDDKAIICSIIHIAKKLELQVVIEGIESTQQEQFLIGEG
HHCCCCHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCEEEECC
CDIGQGFLYGKPMPCNEFEQSLFNQNLLGGQYTYSS
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCC
>Mature Secondary Structure 
GTLQTLDYEIPESMRRSWQNIVNLLARIADVPTTLIMRIHPDYIEVNTTSETENNPYQV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCC
GDKEKLGHGLYCEHVIENKCGLLIPNALIDENWKDNPDIKLGMISYCGLPLYWPNGETFG
CCHHHCCCCCHHHHHHCCCCCEEECHHHHCCCCCCCCCEEEEEHHHCCCEEECCCCCCEE
TICMLDAKENQYNDTYRELLSSFKESIEAQLAVVFQQHKLVRLNNELKNRVETRTTDLAQ
EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSYSLTREIDRRKAAEKQVSYQQTHDQGTGFLNRAALEQVLDQTLDGIDTEQHSLVVINV
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
GFSNARSIQTKYGFEAFDEVLKEFRFRLGHTESSYFVTGRPSSNDVVIIVTGENIETKVQ
CCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEECCCHHHHHH
HLLDDINHVSLGNFFIEDNEVHLNSYVGVVQAHKNSYGKQLLQNACYAMLLCKESGESYR
HHHHHCCEEECCCEEEECCEEEECHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHH
YLCESQSQDISDHNKLESYLLQAVRNDDLMLYYQPKVLPHNHKWIGAEALLRWRHPVLGD
HHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEECHHHHHHHCCCCCCC
VSNEALIHMAEQNGLIFEVGSFVLRTAIDKAKQWSELVDNFKIAVNVSPIQLQNVNFAEQ
CCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEEECCCHHHH
IEHLLDTFHLPAHFLELEVTESALIADEVVARNTLNKLHELGVTLSLDDFGTGYASFSYL
HHHHHHHHCCCHHHEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
KKYPFDAIKVDKSFVQQMEKSDDDKAIICSIIHIAKKLELQVVIEGIESTQQEQFLIGEG
HHCCCCHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCEEEECC
CDIGQGFLYGKPMPCNEFEQSLFNQNLLGGQYTYSS
CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]