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The map label for this gene is blc [H]

Identifier: 156976888

GI number: 156976888

Start: 873811

End: 874332

Strand: Direct

Name: blc [H]

Synonym: VIBHAR_05664

Alternate gene names: 156976888

Gene position: 873811-874332 (Clockwise)

Preceding gene: 156976887

Following gene: 156976893

Centisome position: 39.65

GC content: 44.44

Gene sequence:

>522_bases
ATGAAATCTCTTAAAACACTTTTACTTTTGTCCCTTGCAACGTTGTTTGGCTGTACGTCTAAACCGGACGGCGTGGAGCC
GGTCAACAACTTTGAACTTCAACCATATCTAGGCAAGTGGTATGAAATTGCGCGTCTTGATCATTCCTTTGAGCGTGGTT
TATCGAATGTGACGGCTGAATACGAGTTACGTGAGGATGGTGGCGTAACGGTTATCAACCGAGGCTATTCAGAAGAAGAT
AAAGAATGGACGCAAGCTGACGGCAAAGCGTATTTCGTCGATGGTGAAAACACAGGGCATTTGAAAGTGTCTTTCTTCGG
TCCATTTTATTCGTCTTACATCGTATTTGAGCTAGGTGAGAACTACGACTACGCGTTTATCTCTGGTTTCAATCACGACT
ACCTATGGCTACTGTCACGCACACCAACCGTCGATAAAGCAACGATCGAGCGCTTCAAAAAAGTAGCAAAAGAGAAAGGC
TTCGCGTTGGACGAATTGATTCTCGTAGACCAAACCAAGTAA

Upstream 100 bases:

>100_bases
AGGTAGGACTGTCCTGTGGAGAATTTAGGTACATTCGTTTTTGATCGATTTCTTATCTTCTATAGTAAAATCAGACACTA
AATTAATTTCAGGTTGCTGT

Downstream 100 bases:

>100_bases
TAGTCACAGCGACAAATGAAACATGCCCTACAAAAAGTAGGGCATGCATTTTACTTAGTCCGGGATTACTTAATCAGTCG
AACAACCAAAGAACCAGGTG

Product: lipocalin

Products: NA

Alternate protein names: Protein vlp [H]

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MKSLKTLLLLSLATLFGCTSKPDGVEPVNNFELQPYLGKWYEIARLDHSFERGLSNVTAEYELREDGGVTVINRGYSEED
KEWTQADGKAYFVDGENTGHLKVSFFGPFYSSYIVFELGENYDYAFISGFNHDYLWLLSRTPTVDKATIERFKKVAKEKG
FALDELILVDQTK

Sequences:

>Translated_173_residues
MKSLKTLLLLSLATLFGCTSKPDGVEPVNNFELQPYLGKWYEIARLDHSFERGLSNVTAEYELREDGGVTVINRGYSEED
KEWTQADGKAYFVDGENTGHLKVSFFGPFYSSYIVFELGENYDYAFISGFNHDYLWLLSRTPTVDKATIERFKKVAKEKG
FALDELILVDQTK
>Mature_173_residues
MKSLKTLLLLSLATLFGCTSKPDGVEPVNNFELQPYLGKWYEIARLDHSFERGLSNVTAEYELREDGGVTVINRGYSEED
KEWTQADGKAYFVDGENTGHLKVSFFGPFYSSYIVFELGENYDYAFISGFNHDYLWLLSRTPTVDKATIERFKKVAKEKG
FALDELILVDQTK

Specific function: Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids [H]

COG id: COG3040

COG function: function code M; Bacterial lipocalin

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the calycin superfamily. Lipocalin family [H]

Homologues:

Organism=Homo sapiens, GI4502163, Length=150, Percent_Identity=29.3333333333333, Blast_Score=74, Evalue=8e-14,
Organism=Escherichia coli, GI1790592, Length=174, Percent_Identity=47.7011494252874, Blast_Score=167, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR013208
- InterPro:   IPR022271
- InterPro:   IPR002446
- InterPro:   IPR022272 [H]

Pfam domain/function: PF08212 Lipocalin_2 [H]

EC number: NA

Molecular weight: Translated: 19765; Mature: 19765

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLKTLLLLSLATLFGCTSKPDGVEPVNNFELQPYLGKWYEIARLDHSFERGLSNVTAE
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCEEE
YELREDGGVTVINRGYSEEDKEWTQADGKAYFVDGENTGHLKVSFFGPFYSSYIVFELGE
EEEECCCCEEEEECCCCCCCCHHHHCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECC
NYDYAFISGFNHDYLWLLSRTPTVDKATIERFKKVAKEKGFALDELILVDQTK
CCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCC
>Mature Secondary Structure
MKSLKTLLLLSLATLFGCTSKPDGVEPVNNFELQPYLGKWYEIARLDHSFERGLSNVTAE
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCEEE
YELREDGGVTVINRGYSEEDKEWTQADGKAYFVDGENTGHLKVSFFGPFYSSYIVFELGE
EEEECCCCEEEEECCCCCCCCHHHHCCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECC
NYDYAFISGFNHDYLWLLSRTPTVDKATIERFKKVAKEKGFALDELILVDQTK
CCCEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8514410; 10952301 [H]