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The map label for this gene is yebA [H]

Identifier: 156976847

GI number: 156976847

Start: 827899

End: 828885

Strand: Reverse

Name: yebA [H]

Synonym: VIBHAR_05623

Alternate gene names: 156976847

Gene position: 828885-827899 (Counterclockwise)

Preceding gene: 156976849

Following gene: 156976846

Centisome position: 37.61

GC content: 41.64

Gene sequence:

>987_bases
ATGACAAGTTTAATATTAAGGCAGTATACTCAAAACATTGCGTTCCCCCTCGTATTCATTGCATTCGTTATCATTGCTGG
CGTGTCTTTCACTCATTACCTGCTCACTCCGGAAGAACAGGTTCAACCTGTCACCAACAGGCTTCAAGCAACTGTTTTTA
AAGAGATAAACCACAACAACATTGAACACACCTACGAAATCTACTTTCAGCGGGAAAAGATCACTACCGGCGTTGTAGAT
TACTCTTTCGTGACATCTTTAATTAACGCTGGACTGTCTCAGCATGAGATAAAGTCTTTGATAAAATTAATTGAGAATGA
ATTCGATATTATCGGCTCGGTCCGAAAAGGTGACAAATTCTCTATAAAAACCAAAACCAATAGTCATAATGAAAAATACA
TTAGTTCTTTTTACTATTCTGGTAGTAAAAGAGACTTCTTTGTTATTAATGATGGCAATAACAACGCGTACGATGAATAT
GGTAATAAGTTAATCCGCCAGCCTTATTATGCATTTCCACTAGCAAAAAAGTATAAAGTGAGTTCTGGTTTTAATTTAAA
GCGAAAGCACCCAGTTACCGGTCTACTCGCTCCACATCTAGGTACCGACTACGCAGTGCCGATCGGAACACCAATACAAA
GTATCGCAGATGGTATTGTTGTTAAGTCACGTTACAACCGCTTCGCTGGTAACTACATTAACATCCGCCATAGCAACGGT
TCCCTATCTCGTTATTTGCATCTATCTCGTAGCGATGTTCGCTCAGGTGACCACGTAACTAAAGGGCAGACCATCGGCCG
CACAGGTAATACAGGAAGAACTACTGGCCCTCACTTACATGTCGAACTCATTGTAGATGGCGTCCCTGTTGATTATGCAC
GTTACATCCGAACTAACCCTGCGCCGCCTGCAAACACGCAGATGATGCTAGCGGCAAGAACAGAGCGTGCAGAGCTTATT
AAAGAACTGCATAAATACGCCTCTTAG

Upstream 100 bases:

>100_bases
CTTAGTAAAAACACAGGAATTGGCATTAACGGCGTGTAAGATTTTATTTTAAATATTATACTCCCCTCAATTTTTCGCCG
ATAAGCATAATTTCGATTTA

Downstream 100 bases:

>100_bases
TGTCCGGGGTGATTTCTTTTCAGCTCATCGCGAAACAAACTTTGGGGCATAATGAGCTGAGATCCCGTCACTGTTAATGA
GCTTCGATTCGAAAGTGACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MTSLILRQYTQNIAFPLVFIAFVIIAGVSFTHYLLTPEEQVQPVTNRLQATVFKEINHNNIEHTYEIYFQREKITTGVVD
YSFVTSLINAGLSQHEIKSLIKLIENEFDIIGSVRKGDKFSIKTKTNSHNEKYISSFYYSGSKRDFFVINDGNNNAYDEY
GNKLIRQPYYAFPLAKKYKVSSGFNLKRKHPVTGLLAPHLGTDYAVPIGTPIQSIADGIVVKSRYNRFAGNYINIRHSNG
SLSRYLHLSRSDVRSGDHVTKGQTIGRTGNTGRTTGPHLHVELIVDGVPVDYARYIRTNPAPPANTQMMLAARTERAELI
KELHKYAS

Sequences:

>Translated_328_residues
MTSLILRQYTQNIAFPLVFIAFVIIAGVSFTHYLLTPEEQVQPVTNRLQATVFKEINHNNIEHTYEIYFQREKITTGVVD
YSFVTSLINAGLSQHEIKSLIKLIENEFDIIGSVRKGDKFSIKTKTNSHNEKYISSFYYSGSKRDFFVINDGNNNAYDEY
GNKLIRQPYYAFPLAKKYKVSSGFNLKRKHPVTGLLAPHLGTDYAVPIGTPIQSIADGIVVKSRYNRFAGNYINIRHSNG
SLSRYLHLSRSDVRSGDHVTKGQTIGRTGNTGRTTGPHLHVELIVDGVPVDYARYIRTNPAPPANTQMMLAARTERAELI
KELHKYAS
>Mature_327_residues
TSLILRQYTQNIAFPLVFIAFVIIAGVSFTHYLLTPEEQVQPVTNRLQATVFKEINHNNIEHTYEIYFQREKITTGVVDY
SFVTSLINAGLSQHEIKSLIKLIENEFDIIGSVRKGDKFSIKTKTNSHNEKYISSFYYSGSKRDFFVINDGNNNAYDEYG
NKLIRQPYYAFPLAKKYKVSSGFNLKRKHPVTGLLAPHLGTDYAVPIGTPIQSIADGIVVKSRYNRFAGNYINIRHSNGS
LSRYLHLSRSDVRSGDHVTKGQTIGRTGNTGRTTGPHLHVELIVDGVPVDYARYIRTNPAPPANTQMMLAARTERAELIK
ELHKYAS

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=264, Percent_Identity=33.7121212121212, Blast_Score=157, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 37095; Mature: 36963

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLILRQYTQNIAFPLVFIAFVIIAGVSFTHYLLTPEEQVQPVTNRLQATVFKEINHNN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCC
IEHTYEIYFQREKITTGVVDYSFVTSLINAGLSQHEIKSLIKLIENEFDIIGSVRKGDKF
CCEEEEEEEEECHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
SIKTKTNSHNEKYISSFYYSGSKRDFFVINDGNNNAYDEYGNKLIRQPYYAFPLAKKYKV
EEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHCCCCHHEEC
SSGFNLKRKHPVTGLLAPHLGTDYAVPIGTPIQSIADGIVVKSRYNRFAGNYINIRHSNG
CCCCCCCCCCCCCEEECCCCCCCCEEECCCCHHHHHCCEEEHHHHHHCCCCEEEEEECCC
SLSRYLHLSRSDVRSGDHVTKGQTIGRTGNTGRTTGPHLHVELIVDGVPVDYARYIRTNP
CHHHHEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHCCCC
APPANTQMMLAARTERAELIKELHKYAS
CCCCCCEEEEEEHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSLILRQYTQNIAFPLVFIAFVIIAGVSFTHYLLTPEEQVQPVTNRLQATVFKEINHNN
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCC
IEHTYEIYFQREKITTGVVDYSFVTSLINAGLSQHEIKSLIKLIENEFDIIGSVRKGDKF
CCEEEEEEEEECHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
SIKTKTNSHNEKYISSFYYSGSKRDFFVINDGNNNAYDEYGNKLIRQPYYAFPLAKKYKV
EEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHCCCCHHEEC
SSGFNLKRKHPVTGLLAPHLGTDYAVPIGTPIQSIADGIVVKSRYNRFAGNYINIRHSNG
CCCCCCCCCCCCCEEECCCCCCCCEEECCCCHHHHHCCEEEHHHHHHCCCCEEEEEECCC
SLSRYLHLSRSDVRSGDHVTKGQTIGRTGNTGRTTGPHLHVELIVDGVPVDYARYIRTNP
CHHHHEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHCCCC
APPANTQMMLAARTERAELIKELHKYAS
CCCCCCEEEEEEHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]