| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
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The map label for this gene is hsdM [C]
Identifier: 156976837
GI number: 156976837
Start: 815102
End: 817723
Strand: Direct
Name: hsdM [C]
Synonym: VIBHAR_05613
Alternate gene names: 156976837
Gene position: 815102-817723 (Clockwise)
Preceding gene: 156976836
Following gene: 156976838
Centisome position: 36.98
GC content: 47.1
Gene sequence:
>2622_bases TTGCGCGAAAATATTTTCCGTCTAGACCAATCTGAGTACAAAGAATACATCTTCGGCATCCTGTTTCTTAAACGTATGTC GGACCAATTTCATAAAGACTACCAAGCGAAAGTTAGTGAGTTAAAAGCAGCAGGTCATGACGATGACGAAATTGAGCTTC TGCTAGAAGATGAAGAGCAGTTTGATTTCTACGTGCCGGAGAAAGCACGTTGGGAAAACCTAAAGCACCTGAAAACTAAT GCCGGCTCAGGACTAAACAAAGCACTTGAAGCACTGGAAGAAAAGAACACCGCTAAGGGCTTGGAAGGCGTGCTCAAGCA CATCAACTTCAACCGTAAAGTAGGCAAAAAACCTATCCCTGACGAGCGTTTGGTTGAGTTTATTCAGCACTTTGACAGCA TCCCACTTTCAAATGAAGATTTCGAGCTCCCAGACCTATTGGGGGCAGCCTACGAATACCTAATAAAATATTTCGCTGAC AGTGCAGGTAAAAAAGGCGGTGAGTTTTATACCCCTGCCGAAGTGGTGCGTTTGCTGGTGGAGATTCTTGAGCCTGCTGA AGGCATGGAGATCTACGATCCTACCTGTGGTTCGGGCGGTATGCTGATCCAAAGCCGTAACTACGTGCAGGAAACTGGCG GTAACGTTAAGAAAATTCACTTGTTGGGCCAAGAAGACAATGGCGGCACATGGTCTATCTGTAAGATGAACATGATCTTG CACGGCTCAGGCGGAGCAGACATTGAAAATGGTGACACGCTAGCCACGCCACTGCACCGAACCAAAGATGGTGAAGTACG TCCTTTTGATCGCGTGATTGCCAACCCTCCGTTCTCACAGAACTACAAGAAAGCGGATATGCAGCTCAAAGAACGTTTCA ACACCTTTATGCCAGAGTCTGGCAAGAAAGGGGACTTGATGTTTGTGCAGCACATGGTGGCCTCGTTAAAAGCCAACGGT AAAGCTGCCGTGGTGATGCCTCATGGCGTATTGTTCCGTGGCGCAGAAGAGCGTACTTGCCGCCAAGACTTTATTGAGCG CGGCATTCTTGAAGCCGTGATTGGCCTGCCGCAAGGTTTGTTCTACGGTACGGGCATTCCAGCCTGTGTGTTGGTGATCA ACAAAGGTGGACGTGAAAACCGTGACTCAGTGCTGTTTATTAACGCTGACCGTGAATATCGTGAAGGCAAAAACCAAAAC AGCTTACGCCCTGAAGATATTGAGAAAATCACCAGCGTCTATAAAGCCATGCTGGAAGATGATAAGCATCCTGGCGTCGA AAAATATGCACGTTTGGTTCATAAAGACGAACTAAAGCGTGAAGACTACAACTTCAATATTCGCCGCTATGTCGATAACA GCCCAGCACCTGAGCCTCAAAACGTTAAAGCACACTTAAACGGCGGTATTCCAACCCAGGAAATTGATGCACTGCAAGGC ACTTGGAATGATTACCCAGGCTTGAAAGAGAGCCTGTTCGTTCCACGTGCTAACAACGAGTTTCAAGATTTTGCTGATGA GTTTGAAGCCTTGTCATCGCTCAAACCACATATTGAAAACTTCCCAGCAGTATTGAAAAAACATGCGGATTTTCAAGCGG CGTTGGATGATTGGAAACAAGACTTTGCTGGCTTTGAAGCGCTGGGCGACAAGAAGCTCGGTGATGAAGGTGTATTTGCA CTACGCCGCGAATCTCTGAACACCATTGAAAAGCACCTAATGCCGATTAACCTACTGAACCAATACAAGGTACGTGGTGC ATTGGCGGATTGGTTTAAAACCCTGGAAGCAGATTTTAAATCTGTTGCAGCAAGCGGCTGGAATGCTGAACTCATTCCTG ACGAAGTGCTGTTTGCCAGCCAGTGCGCCGATGTGGTGGAAGAGCTGGAGACCAAACAGGCGCGTATCAGCGAACTGCAA ATCTTTGTGGATGCAGCCGATGAAGAAGATTACGAGCTAACCGTTGAAAACCCTGCGCTGCCGTCTAAGTATGTTAAACA GCTTAAAGACGGCCTGAAAGATCATAAAGCGACCATCAAAACCAGCCTTGCAGTGCTGAAAGCCCAAATCAAAGATGCAT TCACCCAGCTGAAAAACAGTGCAGAACTTCCAAAAGGCACTAAGCAAGGGGATTTTGCAAAAGGGCTGACGGGTAAAGAA CTAAACTTCGCAGTCCATAGCGATATTCTTGCTTTGGCGGATGAACTCGGCGTTCAGTTAGATAACCTTGAGCTGATCAA AGAGTACGCTCGAAAAGGTGCAATAGCAGCTGCTGACGCCACCGAGATTGAAGCTAAAATTGCCGCACACAAAGCGCTAG AAGATGAGCTGAAATTGCTGAAAGTGGAAATCAAGGAAACCGAAAAGCGTCGAGATGAACTGCTTGAGGCTGCCCGAGCG GCAATTACACCAGAAGAAGCGAAATTACTGATTCTGGAACGCTTCAAAACCGAGTTAGATCGCCAATACCAAAGTTATGT CCGTGCCTTGTTGCTTGACCGTATCGCTGCAATCGAGAACCTACACCGCAAATACCAAGTTACTGCCCAAAGCATCATTG CCAAGCGAGAGCAGGAAGCGAACAAGTTAGCTGGCTTTATGAAGGAGCTGGGCTATGAATGA
Upstream 100 bases:
>100_bases CAAAAGCTAACTAAAAGACGGTTTCTCTGACCGTCTTTTTTATTTCCGTCTTAGTCTTTTTATTGGCAATGCTGATCGTT TGGTTACCCATTGAACAAGT
Downstream 100 bases:
>100_bases AAAGAAATGTTATCCATTACAGCGTTTAGGTGAGCTAGCTTCGGGAAATCGGGGAGTTTCTTACAAGCCCGAGAATCTAA AAGCAGCGATTGATGATAAG
Product: type I restriction-modification system specificity subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 873; Mature: 873
Protein sequence:
>873_residues MRENIFRLDQSEYKEYIFGILFLKRMSDQFHKDYQAKVSELKAAGHDDDEIELLLEDEEQFDFYVPEKARWENLKHLKTN AGSGLNKALEALEEKNTAKGLEGVLKHINFNRKVGKKPIPDERLVEFIQHFDSIPLSNEDFELPDLLGAAYEYLIKYFAD SAGKKGGEFYTPAEVVRLLVEILEPAEGMEIYDPTCGSGGMLIQSRNYVQETGGNVKKIHLLGQEDNGGTWSICKMNMIL HGSGGADIENGDTLATPLHRTKDGEVRPFDRVIANPPFSQNYKKADMQLKERFNTFMPESGKKGDLMFVQHMVASLKANG KAAVVMPHGVLFRGAEERTCRQDFIERGILEAVIGLPQGLFYGTGIPACVLVINKGGRENRDSVLFINADREYREGKNQN SLRPEDIEKITSVYKAMLEDDKHPGVEKYARLVHKDELKREDYNFNIRRYVDNSPAPEPQNVKAHLNGGIPTQEIDALQG TWNDYPGLKESLFVPRANNEFQDFADEFEALSSLKPHIENFPAVLKKHADFQAALDDWKQDFAGFEALGDKKLGDEGVFA LRRESLNTIEKHLMPINLLNQYKVRGALADWFKTLEADFKSVAASGWNAELIPDEVLFASQCADVVEELETKQARISELQ IFVDAADEEDYELTVENPALPSKYVKQLKDGLKDHKATIKTSLAVLKAQIKDAFTQLKNSAELPKGTKQGDFAKGLTGKE LNFAVHSDILALADELGVQLDNLELIKEYARKGAIAAADATEIEAKIAAHKALEDELKLLKVEIKETEKRRDELLEAARA AITPEEAKLLILERFKTELDRQYQSYVRALLLDRIAAIENLHRKYQVTAQSIIAKREQEANKLAGFMKELGYE
Sequences:
>Translated_873_residues MRENIFRLDQSEYKEYIFGILFLKRMSDQFHKDYQAKVSELKAAGHDDDEIELLLEDEEQFDFYVPEKARWENLKHLKTN AGSGLNKALEALEEKNTAKGLEGVLKHINFNRKVGKKPIPDERLVEFIQHFDSIPLSNEDFELPDLLGAAYEYLIKYFAD SAGKKGGEFYTPAEVVRLLVEILEPAEGMEIYDPTCGSGGMLIQSRNYVQETGGNVKKIHLLGQEDNGGTWSICKMNMIL HGSGGADIENGDTLATPLHRTKDGEVRPFDRVIANPPFSQNYKKADMQLKERFNTFMPESGKKGDLMFVQHMVASLKANG KAAVVMPHGVLFRGAEERTCRQDFIERGILEAVIGLPQGLFYGTGIPACVLVINKGGRENRDSVLFINADREYREGKNQN SLRPEDIEKITSVYKAMLEDDKHPGVEKYARLVHKDELKREDYNFNIRRYVDNSPAPEPQNVKAHLNGGIPTQEIDALQG TWNDYPGLKESLFVPRANNEFQDFADEFEALSSLKPHIENFPAVLKKHADFQAALDDWKQDFAGFEALGDKKLGDEGVFA LRRESLNTIEKHLMPINLLNQYKVRGALADWFKTLEADFKSVAASGWNAELIPDEVLFASQCADVVEELETKQARISELQ IFVDAADEEDYELTVENPALPSKYVKQLKDGLKDHKATIKTSLAVLKAQIKDAFTQLKNSAELPKGTKQGDFAKGLTGKE LNFAVHSDILALADELGVQLDNLELIKEYARKGAIAAADATEIEAKIAAHKALEDELKLLKVEIKETEKRRDELLEAARA AITPEEAKLLILERFKTELDRQYQSYVRALLLDRIAAIENLHRKYQVTAQSIIAKREQEANKLAGFMKELGYE >Mature_873_residues MRENIFRLDQSEYKEYIFGILFLKRMSDQFHKDYQAKVSELKAAGHDDDEIELLLEDEEQFDFYVPEKARWENLKHLKTN AGSGLNKALEALEEKNTAKGLEGVLKHINFNRKVGKKPIPDERLVEFIQHFDSIPLSNEDFELPDLLGAAYEYLIKYFAD SAGKKGGEFYTPAEVVRLLVEILEPAEGMEIYDPTCGSGGMLIQSRNYVQETGGNVKKIHLLGQEDNGGTWSICKMNMIL HGSGGADIENGDTLATPLHRTKDGEVRPFDRVIANPPFSQNYKKADMQLKERFNTFMPESGKKGDLMFVQHMVASLKANG KAAVVMPHGVLFRGAEERTCRQDFIERGILEAVIGLPQGLFYGTGIPACVLVINKGGRENRDSVLFINADREYREGKNQN SLRPEDIEKITSVYKAMLEDDKHPGVEKYARLVHKDELKREDYNFNIRRYVDNSPAPEPQNVKAHLNGGIPTQEIDALQG TWNDYPGLKESLFVPRANNEFQDFADEFEALSSLKPHIENFPAVLKKHADFQAALDDWKQDFAGFEALGDKKLGDEGVFA LRRESLNTIEKHLMPINLLNQYKVRGALADWFKTLEADFKSVAASGWNAELIPDEVLFASQCADVVEELETKQARISELQ IFVDAADEEDYELTVENPALPSKYVKQLKDGLKDHKATIKTSLAVLKAQIKDAFTQLKNSAELPKGTKQGDFAKGLTGKE LNFAVHSDILALADELGVQLDNLELIKEYARKGAIAAADATEIEAKIAAHKALEDELKLLKVEIKETEKRRDELLEAARA AITPEEAKLLILERFKTELDRQYQSYVRALLLDRIAAIENLHRKYQVTAQSIIAKREQEANKLAGFMKELGYE
Specific function: The M And S Subunits Together Form A Methyltransferase (Mtase) That Methylates Two Adenine Residues In Complementary Strands Of A Bipartite DNA Recognition Sequence. In The Presence Of The R Subunit The Complex Can Also Act As An Endonuclease, Binding To
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=337, Percent_Identity=28.486646884273, Blast_Score=117, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR011991 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 98474; Mature: 98474
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRENIFRLDQSEYKEYIFGILFLKRMSDQFHKDYQAKVSELKAAGHDDDEIELLLEDEEQ CCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC FDFYVPEKARWENLKHLKTNAGSGLNKALEALEEKNTAKGLEGVLKHINFNRKVGKKPIP CCEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCC DERLVEFIQHFDSIPLSNEDFELPDLLGAAYEYLIKYFADSAGKKGGEFYTPAEVVRLLV HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH EILEPAEGMEIYDPTCGSGGMLIQSRNYVQETGGNVKKIHLLGQEDNGGTWSICKMNMIL HHHCCCCCCEEECCCCCCCCEEEECCCHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEEE HGSGGADIENGDTLATPLHRTKDGEVRPFDRVIANPPFSQNYKKADMQLKERFNTFMPES ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC GKKGDLMFVQHMVASLKANGKAAVVMPHGVLFRGAEERTCRQDFIERGILEAVIGLPQGL CCCCCHHHHHHHHHHHCCCCCEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCH FYGTGIPACVLVINKGGRENRDSVLFINADREYREGKNQNSLRPEDIEKITSVYKAMLED HHCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC DKHPGVEKYARLVHKDELKREDYNFNIRRYVDNSPAPEPQNVKAHLNGGIPTQEIDALQG CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHC TWNDYPGLKESLFVPRANNEFQDFADEFEALSSLKPHIENFPAVLKKHADFQAALDDWKQ CCCCCCCCHHHEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHHHHH DFAGFEALGDKKLGDEGVFALRRESLNTIEKHLMPINLLNQYKVRGALADWFKTLEADFK HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH SVAASGWNAELIPDEVLFASQCADVVEELETKQARISELQIFVDAADEEDYELTVENPAL HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEECCCCC PSKYVKQLKDGLKDHKATIKTSLAVLKAQIKDAFTQLKNSAELPKGTKQGDFAKGLTGKE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCC LNFAVHSDILALADELGVQLDNLELIKEYARKGAIAAADATEIEAKIAAHKALEDELKLL CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHH KVEIKETEKRRDELLEAARAAITPEEAKLLILERFKTELDRQYQSYVRALLLDRIAAIEN HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHRKYQVTAQSIIAKREQEANKLAGFMKELGYE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRENIFRLDQSEYKEYIFGILFLKRMSDQFHKDYQAKVSELKAAGHDDDEIELLLEDEEQ CCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC FDFYVPEKARWENLKHLKTNAGSGLNKALEALEEKNTAKGLEGVLKHINFNRKVGKKPIP CCEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCC DERLVEFIQHFDSIPLSNEDFELPDLLGAAYEYLIKYFADSAGKKGGEFYTPAEVVRLLV HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH EILEPAEGMEIYDPTCGSGGMLIQSRNYVQETGGNVKKIHLLGQEDNGGTWSICKMNMIL HHHCCCCCCEEECCCCCCCCEEEECCCHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEEE HGSGGADIENGDTLATPLHRTKDGEVRPFDRVIANPPFSQNYKKADMQLKERFNTFMPES ECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC GKKGDLMFVQHMVASLKANGKAAVVMPHGVLFRGAEERTCRQDFIERGILEAVIGLPQGL CCCCCHHHHHHHHHHHCCCCCEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCH FYGTGIPACVLVINKGGRENRDSVLFINADREYREGKNQNSLRPEDIEKITSVYKAMLED HHCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC DKHPGVEKYARLVHKDELKREDYNFNIRRYVDNSPAPEPQNVKAHLNGGIPTQEIDALQG CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHC TWNDYPGLKESLFVPRANNEFQDFADEFEALSSLKPHIENFPAVLKKHADFQAALDDWKQ CCCCCCCCHHHEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHHHHH DFAGFEALGDKKLGDEGVFALRRESLNTIEKHLMPINLLNQYKVRGALADWFKTLEADFK HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH SVAASGWNAELIPDEVLFASQCADVVEELETKQARISELQIFVDAADEEDYELTVENPAL HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEECCCCC PSKYVKQLKDGLKDHKATIKTSLAVLKAQIKDAFTQLKNSAELPKGTKQGDFAKGLTGKE CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCC LNFAVHSDILALADELGVQLDNLELIKEYARKGAIAAADATEIEAKIAAHKALEDELKLL CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHH KVEIKETEKRRDELLEAARAAITPEEAKLLILERFKTELDRQYQSYVRALLLDRIAAIEN HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LHRKYQVTAQSIIAKREQEANKLAGFMKELGYE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]