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The map label for this gene is ycfQ [C]

Identifier: 156976818

GI number: 156976818

Start: 798277

End: 798852

Strand: Reverse

Name: ycfQ [C]

Synonym: VIBHAR_05594

Alternate gene names: 156976818

Gene position: 798852-798277 (Counterclockwise)

Preceding gene: 156976825

Following gene: 156976817

Centisome position: 36.25

GC content: 45.83

Gene sequence:

>576_bases
ATGGCAAGAAAAGCCAACTTCGACCGAGATGAAAAGCTTCTCGTGGCTATGGATGTGTTTTGGCGCAAAGGCTTTGCAAA
CACGTCTATCTCGGATCTCACCGACGAGTTGAACATCAACCGCTTCAGTCTTTACAACACCTATGGTGACAAGCAACAGC
TCTACTACGAAGCGCTCGATGCATACTTGAAAAAGGTCTCGCTACCGTCACTGAATAATCTGGAAAAAGACGACGCGTCT
TTACCTGAGTTGGAATCGTTCCTTAAATCTTTTGCTGAGCTGCAACGCAAACGCAACTGTGGGTGTTTTATTCAAAATGC
GTTGATTGAGCACGCTGGTGAAGACGATGACGTACTGCGCAAAGGGCATTTCTTATTTGACCATCTTATCGACATCATTG
CGGATGCGCTGACTAATGCGCAGAAAGAAACCTTAGTACCGAAAACGCTGAAACCAGAAGAACTCGCTAGTTTTGTTCTC
AACAACATGCAAGGCATGCGCGTGCTGGGCAAAGCCAAACGTTATGCCGATTTGGATACGGCGCTTTCATGCTTACTGGT
TTTGATTAGGAAGTAA

Upstream 100 bases:

>100_bases
GAGTTTCACTATTTTGGTTCAGTTCGAACGCTAGAGGTTCTCTGTACCATCCCTCCAAAGCAATTTAGTTACCCGATAAG
CAGACCCAGGCAGGTAATTT

Downstream 100 bases:

>100_bases
CATGTCGATTGAAGTGATAGTCGTACGTCTTACCAAAGGCATGGACTTAAAGCTGAGCCTAGCGAAATTGGTCGAGCAGC
ACGTCATTAAAGCTGGCTCG

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulatory Protein; Transcriptional Regulator Tetr Family; HTH-Type Transcriptional Regulator; Regulatory Protein TetR Family Protein; TetR Family Transcription Regulator Protein; TetR-Family Protein Transcriptional Regulator; TerR Family Transcriptional Regulator; Transcriptional Regulator Tetr-Like Protein

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MARKANFDRDEKLLVAMDVFWRKGFANTSISDLTDELNINRFSLYNTYGDKQQLYYEALDAYLKKVSLPSLNNLEKDDAS
LPELESFLKSFAELQRKRNCGCFIQNALIEHAGEDDDVLRKGHFLFDHLIDIIADALTNAQKETLVPKTLKPEELASFVL
NNMQGMRVLGKAKRYADLDTALSCLLVLIRK

Sequences:

>Translated_191_residues
MARKANFDRDEKLLVAMDVFWRKGFANTSISDLTDELNINRFSLYNTYGDKQQLYYEALDAYLKKVSLPSLNNLEKDDAS
LPELESFLKSFAELQRKRNCGCFIQNALIEHAGEDDDVLRKGHFLFDHLIDIIADALTNAQKETLVPKTLKPEELASFVL
NNMQGMRVLGKAKRYADLDTALSCLLVLIRK
>Mature_190_residues
ARKANFDRDEKLLVAMDVFWRKGFANTSISDLTDELNINRFSLYNTYGDKQQLYYEALDAYLKKVSLPSLNNLEKDDASL
PELESFLKSFAELQRKRNCGCFIQNALIEHAGEDDDVLRKGHFLFDHLIDIIADALTNAQKETLVPKTLKPEELASFVLN
NMQGMRVLGKAKRYADLDTALSCLLVLIRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21825; Mature: 21694

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKANFDRDEKLLVAMDVFWRKGFANTSISDLTDELNINRFSLYNTYGDKQQLYYEALD
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
AYLKKVSLPSLNNLEKDDASLPELESFLKSFAELQRKRNCGCFIQNALIEHAGEDDDVLR
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHH
KGHFLFDHLIDIIADALTNAQKETLVPKTLKPEELASFVLNNMQGMRVLGKAKRYADLDT
HHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSCLLVLIRK
HHHHHHHHHCC
>Mature Secondary Structure 
ARKANFDRDEKLLVAMDVFWRKGFANTSISDLTDELNINRFSLYNTYGDKQQLYYEALD
CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
AYLKKVSLPSLNNLEKDDASLPELESFLKSFAELQRKRNCGCFIQNALIEHAGEDDDVLR
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHH
KGHFLFDHLIDIIADALTNAQKETLVPKTLKPEELASFVLNNMQGMRVLGKAKRYADLDT
HHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSCLLVLIRK
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA