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The map label for this gene is nrtC [H]

Identifier: 156976812

GI number: 156976812

Start: 791648

End: 793012

Strand: Direct

Name: nrtC [H]

Synonym: VIBHAR_05588

Alternate gene names: 156976812

Gene position: 791648-793012 (Clockwise)

Preceding gene: 156976811

Following gene: 156976813

Centisome position: 35.92

GC content: 47.84

Gene sequence:

>1365_bases
ATGAAATGGAGTTCGATGCTGAAAGTGTCAGCAATTTCGTTATCGGTATTCACCACGGTCAGCGTAAAGGCTGAGTTGGG
TGAGCCAGAAATTGAAGACCTGAAGTTTGGTTTTATTAAGTTAACCGATATGGCACCGCTGGCGGTTGCTTATGAGAGAG
GCTTTTTTGAAGACGAAGGTTTGTACGTCACTTTAGAAGCGCAAGCAAACTGGAAGGTGCTATTAGACCGAGTCATCGAT
GGTGAACTTGCGGGCGCGCACATGCTTGCTGGTCAGCCATTGGGCGCGACGATTGGTGTCGGCACAAAAGCAGAAGTGAT
TACCGCGTTCAGTATGGATTTGAACGGCAACGCAGTCACGGTTTCCAATGATACTTGGGAGCAGATGAAGCAATACATTG
CAAAGCAACCAGATGGTAAGCCAGTTCACCCAATCAAAGCGGATGCACTGAAGCCTGTGGTCGACAGGTATCTGGATAAA
GGCAAATCGTTCAACATGGGGATGGTGTTCCCTGTATCGACGCACAACTATGAGTTGCGTTACTGGTTAGCGGCAGGCGG
GATTCATCCAGGTTTTTATGCACCAGACTCAGGTGATAACAGTGGCCAATTGGATGCTGACGTTCTTTTGAGTGTTACAC
CGCCACCACAAATGCCAGCAACAATGGAAGCGGGCACGATCAAAGGGTACTGCGTAGGCGAACCATGGAACCAACAAGCC
GTATTCAAAGGTATTGGTACGCCAGTCGTGACCGATTACGAGATCTGGAAGAACAACCCAGAGAAAGTGTTTGGTGTTTC
CAAAGCTTGGGCTGAGAAGTATCCAAACACGCACATTCGCGTAGTGAAAGCCTTGATTCGAGCGGCACATTGGTTAGATG
AAAACGACAATGCCAACCGCCAAGAAGCAGTGAAGATGCTGTCAAAGAGCGAGTACGTTGGAGCCGATGCCGAAGTTATC
GCTAACTCAATGACCGGCACATTTGAATACGAGAAAGGCGACAAACGAGACGTGCCAGACTTCAACGTGTTCTTCCGTCA
TAACGCCACTTATCCGTATTACAGCGATGCGATTTGGTACCTGACCCAAATGCGTCGCTGGGGGCAAATCTCAAGCGAGA
AATCCGATGATTGGTACATGGATGTGGCGAAAGAGGTGTACCGTCCAGATATCTACCAACAAGCAGCTCAAGCGCTAATT
GAAGATGGAGTGTTGAGCAAAAAAGACTTCCCAGATTTTAGTGTTGAAGATGGTTTCCGTGCGCCACAAACACACTTTAT
CGACAACATCGTTTATGACGGTCGCGAGCCAAATAAATATCTAGAGAAGTTCTCTATCGGGCTTAAAGGAAAAGACAAGG
TTTAG

Upstream 100 bases:

>100_bases
TTGAATCGCTTATCTCAATTATCAACGGCGGTAATTGTAGACTTAGCAACGGCGCTACTGCTCTTCGGAGTAGTGGCGCT
TTTTTTATGGGAGCAAACCA

Downstream 100 bases:

>100_bases
GATGAGCAGTCCTACAAAAAATACAGCGGGCAGGTGAGTCTGTCCGCAATAACAAGCATGTAAATTTCTTAGGAGTGAGT
ATGTTTAGTAATGTCATTTC

Product: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MKWSSMLKVSAISLSVFTTVSVKAELGEPEIEDLKFGFIKLTDMAPLAVAYERGFFEDEGLYVTLEAQANWKVLLDRVID
GELAGAHMLAGQPLGATIGVGTKAEVITAFSMDLNGNAVTVSNDTWEQMKQYIAKQPDGKPVHPIKADALKPVVDRYLDK
GKSFNMGMVFPVSTHNYELRYWLAAGGIHPGFYAPDSGDNSGQLDADVLLSVTPPPQMPATMEAGTIKGYCVGEPWNQQA
VFKGIGTPVVTDYEIWKNNPEKVFGVSKAWAEKYPNTHIRVVKALIRAAHWLDENDNANRQEAVKMLSKSEYVGADAEVI
ANSMTGTFEYEKGDKRDVPDFNVFFRHNATYPYYSDAIWYLTQMRRWGQISSEKSDDWYMDVAKEVYRPDIYQQAAQALI
EDGVLSKKDFPDFSVEDGFRAPQTHFIDNIVYDGREPNKYLEKFSIGLKGKDKV

Sequences:

>Translated_454_residues
MKWSSMLKVSAISLSVFTTVSVKAELGEPEIEDLKFGFIKLTDMAPLAVAYERGFFEDEGLYVTLEAQANWKVLLDRVID
GELAGAHMLAGQPLGATIGVGTKAEVITAFSMDLNGNAVTVSNDTWEQMKQYIAKQPDGKPVHPIKADALKPVVDRYLDK
GKSFNMGMVFPVSTHNYELRYWLAAGGIHPGFYAPDSGDNSGQLDADVLLSVTPPPQMPATMEAGTIKGYCVGEPWNQQA
VFKGIGTPVVTDYEIWKNNPEKVFGVSKAWAEKYPNTHIRVVKALIRAAHWLDENDNANRQEAVKMLSKSEYVGADAEVI
ANSMTGTFEYEKGDKRDVPDFNVFFRHNATYPYYSDAIWYLTQMRRWGQISSEKSDDWYMDVAKEVYRPDIYQQAAQALI
EDGVLSKKDFPDFSVEDGFRAPQTHFIDNIVYDGREPNKYLEKFSIGLKGKDKV
>Mature_454_residues
MKWSSMLKVSAISLSVFTTVSVKAELGEPEIEDLKFGFIKLTDMAPLAVAYERGFFEDEGLYVTLEAQANWKVLLDRVID
GELAGAHMLAGQPLGATIGVGTKAEVITAFSMDLNGNAVTVSNDTWEQMKQYIAKQPDGKPVHPIKADALKPVVDRYLDK
GKSFNMGMVFPVSTHNYELRYWLAAGGIHPGFYAPDSGDNSGQLDADVLLSVTPPPQMPATMEAGTIKGYCVGEPWNQQA
VFKGIGTPVVTDYEIWKNNPEKVFGVSKAWAEKYPNTHIRVVKALIRAAHWLDENDNANRQEAVKMLSKSEYVGADAEVI
ANSMTGTFEYEKGDKRDVPDFNVFFRHNATYPYYSDAIWYLTQMRRWGQISSEKSDDWYMDVAKEVYRPDIYQQAAQALI
EDGVLSKKDFPDFSVEDGFRAPQTHFIDNIVYDGREPNKYLEKFSIGLKGKDKV

Specific function: Probably part of a high-affinity binding-protein- dependent transport system for nitrate. Probably responsible for energy coupling to the transport system [H]

COG id: COG0715

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR015168
- InterPro:   IPR005890 [H]

Pfam domain/function: PF00005 ABC_tran; PF09084 NMT1 [H]

EC number: NA

Molecular weight: Translated: 50830; Mature: 50830

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWSSMLKVSAISLSVFTTVSVKAELGEPEIEDLKFGFIKLTDMAPLAVAYERGFFEDEG
CCHHHCEEEEEEEEEEEEEEEEEEECCCCCHHHCEEEEEEEECCCCHHHHHHCCCCCCCC
LYVTLEAQANWKVLLDRVIDGELAGAHMLAGQPLGATIGVGTKAEVITAFSMDLNGNAVT
EEEEEECCCCHHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCEEEEEEEEECCCCEEE
VSNDTWEQMKQYIAKQPDGKPVHPIKADALKPVVDRYLDKGKSFNMGMVFPVSTHNYELR
ECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEE
YWLAAGGIHPGFYAPDSGDNSGQLDADVLLSVTPPPQMPATMEAGTIKGYCVGEPWNQQA
EEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHH
VFKGIGTPVVTDYEIWKNNPEKVFGVSKAWAEKYPNTHIRVVKALIRAAHWLDENDNANR
HHHCCCCCEEEEHHHHCCCCHHEEECHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCH
QEAVKMLSKSEYVGADAEVIANSMTGTFEYEKGDKRDVPDFNVFFRHNATYPYYSDAIWY
HHHHHHHHHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHH
LTQMRRWGQISSEKSDDWYMDVAKEVYRPDIYQQAAQALIEDGVLSKKDFPDFSVEDGFR
HHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
APQTHFIDNIVYDGREPNKYLEKFSIGLKGKDKV
CCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKWSSMLKVSAISLSVFTTVSVKAELGEPEIEDLKFGFIKLTDMAPLAVAYERGFFEDEG
CCHHHCEEEEEEEEEEEEEEEEEEECCCCCHHHCEEEEEEEECCCCHHHHHHCCCCCCCC
LYVTLEAQANWKVLLDRVIDGELAGAHMLAGQPLGATIGVGTKAEVITAFSMDLNGNAVT
EEEEEECCCCHHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCEEEEEEEEECCCCEEE
VSNDTWEQMKQYIAKQPDGKPVHPIKADALKPVVDRYLDKGKSFNMGMVFPVSTHNYELR
ECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEE
YWLAAGGIHPGFYAPDSGDNSGQLDADVLLSVTPPPQMPATMEAGTIKGYCVGEPWNQQA
EEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHH
VFKGIGTPVVTDYEIWKNNPEKVFGVSKAWAEKYPNTHIRVVKALIRAAHWLDENDNANR
HHHCCCCCEEEEHHHHCCCCHHEEECHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCH
QEAVKMLSKSEYVGADAEVIANSMTGTFEYEKGDKRDVPDFNVFFRHNATYPYYSDAIWY
HHHHHHHHHHHCCCCCHHHHHHCCCCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHH
LTQMRRWGQISSEKSDDWYMDVAKEVYRPDIYQQAAQALIEDGVLSKKDFPDFSVEDGFR
HHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
APQTHFIDNIVYDGREPNKYLEKFSIGLKGKDKV
CCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]