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The map label for this gene is ydaM [H]

Identifier: 156976802

GI number: 156976802

Start: 780119

End: 782071

Strand: Reverse

Name: ydaM [H]

Synonym: VIBHAR_05578

Alternate gene names: 156976802

Gene position: 782071-780119 (Counterclockwise)

Preceding gene: 156976804

Following gene: 156976801

Centisome position: 35.48

GC content: 45.47

Gene sequence:

>1953_bases
GTGTTTCACTTTGAAGAGTTCGCTTTTATCAACCGTCTAAAGCTTATACCGTTTAAAACGTTACGGTATCTATTTCCGAT
TGTGTTTGGCGCGATGTGTTCAACCAGCAGTTTCTCTGCAGACCACGCGAACAAAGAAAGTTACCTCAGACACCATATCT
CGATAAAAGACGACCCGATGTTGGAATTTTATTTCGACTCTATCGGTAAGCCTCGCTCAATCAAATCAAACGACTTCACA
TTACCCGCGGACGCCTCTCCGGATTCACAAGCACTTTATTACTTCGCCCGTATTTATCTTGAGCGTTACGAAGGCGTTCC
AATTCCAGAGCTCCCTGACCTTGTTGAATTCGGAAAACAACATGATTTGCCTTGGGTGATTGCAGAAGCAAAGTTAAACC
AAGCCGTCGAACTGATAGAAGCAGACGAAGTTTGGCAAGGCGAGCTTCTTCTGCACGATGTCATCAATATCTCTCGCCAG
ATTGGCTATAACTCTCTTCAAGGTCGAGCTTACCGCTGGCTTGGGAATGCAGAGGTTCAACGCGCTCAAGTACAAACCGG
TTTAAAACGTTATCGAACCGCTTATGATTTGCTGGAAGGATCTGAGTTTGAAATCCAGATTGCGATGACACTCAACAACA
TCGCTTCACTTTATATGGAACTGTCGGACTGGGATCGGGCAAAAACCTATCTCGACCAAGCAATTAATGGCTACTTAAAC
AGCGATGATAAGTATGACAACAGCTTGTTCCTTGCCATCATGTATGCGAACTTAAGTGTCATTAACTATGGCATGGAAAA
GTACGAAGAATCAGAACGTTACTTCGAGCAAGCAGCACAACTTTCCATGGCAACGGGCTCAGTCAGAATTAAGCATAACT
CCGTTTCTAACTTATCCCAACTTCTTAGCACACTGGGTAAGATGGAAGAATCTTATCAACTTGCACAGACATGTTTAGAA
CTTCCGAACCCGCAAAACTTAAAAGGCCTAAAAGCCGCCTGCCACGAAGCTTTTGCCGAAGCCTACCTTAAGGATGGGAA
GTATGAGCAAGCAATTGAGAGTGCAAAAACTGCATTAGAAGACCTAAGTGAAACGGCAAGTGCAGAGACTAAGCAGCAAA
TGGACCTGTATTTAGTACTCGCTCGCGCCAACCAAGAATTAAAACAATTTGAAAAAGCATTCGATAATTTGGGCCGTTTA
CGTAATTTAGAAAAAAGCTTTGATAGCCATGTTCATGGCGATGAGATGATCAATATCAAACTCGACTTAGAGGCGAAGCT
GGCTCAGAAAGAATTGACCCTGCTCGAAGCGAAGAATGCGCTCCAAGCTTCTGAGCTTGAATCCCAACGCTATCGCGAAA
TCTTCTACTTCCTTATTGCGGCCGCTATCGGTTTTTGGCTTTTCCGTTACATTCGTCAAATGAACAAGATCAACGAAGAG
TTGGCGCAGCAAAATACCACTGACCCGCTAACGAAGGTGCATAATCGTCGCTATCTGCCTAGTTGGCTGGATCAAATGGC
GCGTCGAAGCCCTGCTCGTAAGTTTGCCCTTGCCGTTATTGACATTGACCATTTCAAAGCCTTCAATGACCAGTATGGCC
ATGACCTAGGCGATAAAATGCTGTTGCACGTTGCACGTATTCTCGACGAGGCGACACGCGCCGGAGACTTACTCGTCCGT
TGGGGTGGCGAAGAGTTTGTGCTGCTGTTCGAAATTAGACACGCTGATGACTGTGCAAAAACGTTAGATCGTTTGAGACT
TGCAGTTGAAAACAACAACCTTGAGGTTGACTCTGAATCGCTAGGCGCGACAATCTCACTCGGCGCAGTTAACGAGCTAA
GTGCGCAAAGCATCAAACAGGAGTGGGATCAATGGTTCTTTGCCGCTGACCAAGCTCTGTACGATGCCAAACAATCTGGT
CGAAACCAGTACCAAATTCACTCGACGTCATAG

Upstream 100 bases:

>100_bases
TCAGTGGCCTATTTTCACTCATTGAACAGTTACTTTTAATGTACAGATAAAACAACTAAATCTGTGGTTATTCATAGATG
AGAAATGATAGACTTCTTGC

Downstream 100 bases:

>100_bases
AAAAACACAATGAAAAAAACATGGATTCTCGCTGCACTGTCGCCATTAGTATTGGCCGCGTGCAGCAATCAGCAAGCCGC
GCAATTAGGAATGAGAAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MFHFEEFAFINRLKLIPFKTLRYLFPIVFGAMCSTSSFSADHANKESYLRHHISIKDDPMLEFYFDSIGKPRSIKSNDFT
LPADASPDSQALYYFARIYLERYEGVPIPELPDLVEFGKQHDLPWVIAEAKLNQAVELIEADEVWQGELLLHDVINISRQ
IGYNSLQGRAYRWLGNAEVQRAQVQTGLKRYRTAYDLLEGSEFEIQIAMTLNNIASLYMELSDWDRAKTYLDQAINGYLN
SDDKYDNSLFLAIMYANLSVINYGMEKYEESERYFEQAAQLSMATGSVRIKHNSVSNLSQLLSTLGKMEESYQLAQTCLE
LPNPQNLKGLKAACHEAFAEAYLKDGKYEQAIESAKTALEDLSETASAETKQQMDLYLVLARANQELKQFEKAFDNLGRL
RNLEKSFDSHVHGDEMINIKLDLEAKLAQKELTLLEAKNALQASELESQRYREIFYFLIAAAIGFWLFRYIRQMNKINEE
LAQQNTTDPLTKVHNRRYLPSWLDQMARRSPARKFALAVIDIDHFKAFNDQYGHDLGDKMLLHVARILDEATRAGDLLVR
WGGEEFVLLFEIRHADDCAKTLDRLRLAVENNNLEVDSESLGATISLGAVNELSAQSIKQEWDQWFFAADQALYDAKQSG
RNQYQIHSTS

Sequences:

>Translated_650_residues
MFHFEEFAFINRLKLIPFKTLRYLFPIVFGAMCSTSSFSADHANKESYLRHHISIKDDPMLEFYFDSIGKPRSIKSNDFT
LPADASPDSQALYYFARIYLERYEGVPIPELPDLVEFGKQHDLPWVIAEAKLNQAVELIEADEVWQGELLLHDVINISRQ
IGYNSLQGRAYRWLGNAEVQRAQVQTGLKRYRTAYDLLEGSEFEIQIAMTLNNIASLYMELSDWDRAKTYLDQAINGYLN
SDDKYDNSLFLAIMYANLSVINYGMEKYEESERYFEQAAQLSMATGSVRIKHNSVSNLSQLLSTLGKMEESYQLAQTCLE
LPNPQNLKGLKAACHEAFAEAYLKDGKYEQAIESAKTALEDLSETASAETKQQMDLYLVLARANQELKQFEKAFDNLGRL
RNLEKSFDSHVHGDEMINIKLDLEAKLAQKELTLLEAKNALQASELESQRYREIFYFLIAAAIGFWLFRYIRQMNKINEE
LAQQNTTDPLTKVHNRRYLPSWLDQMARRSPARKFALAVIDIDHFKAFNDQYGHDLGDKMLLHVARILDEATRAGDLLVR
WGGEEFVLLFEIRHADDCAKTLDRLRLAVENNNLEVDSESLGATISLGAVNELSAQSIKQEWDQWFFAADQALYDAKQSG
RNQYQIHSTS
>Mature_650_residues
MFHFEEFAFINRLKLIPFKTLRYLFPIVFGAMCSTSSFSADHANKESYLRHHISIKDDPMLEFYFDSIGKPRSIKSNDFT
LPADASPDSQALYYFARIYLERYEGVPIPELPDLVEFGKQHDLPWVIAEAKLNQAVELIEADEVWQGELLLHDVINISRQ
IGYNSLQGRAYRWLGNAEVQRAQVQTGLKRYRTAYDLLEGSEFEIQIAMTLNNIASLYMELSDWDRAKTYLDQAINGYLN
SDDKYDNSLFLAIMYANLSVINYGMEKYEESERYFEQAAQLSMATGSVRIKHNSVSNLSQLLSTLGKMEESYQLAQTCLE
LPNPQNLKGLKAACHEAFAEAYLKDGKYEQAIESAKTALEDLSETASAETKQQMDLYLVLARANQELKQFEKAFDNLGRL
RNLEKSFDSHVHGDEMINIKLDLEAKLAQKELTLLEAKNALQASELESQRYREIFYFLIAAAIGFWLFRYIRQMNKINEE
LAQQNTTDPLTKVHNRRYLPSWLDQMARRSPARKFALAVIDIDHFKAFNDQYGHDLGDKMLLHVARILDEATRAGDLLVR
WGGEEFVLLFEIRHADDCAKTLDRLRLAVENNNLEVDSESLGATISLGAVNELSAQSIKQEWDQWFFAADQALYDAKQSG
RNQYQIHSTS

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=36, Blast_Score=100, Evalue=4e-22,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=34.7305389221557, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI145693134, Length=185, Percent_Identity=29.7297297297297, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=32.5581395348837, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI87082007, Length=178, Percent_Identity=32.5842696629214, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=31.547619047619, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787816, Length=264, Percent_Identity=25.7575757575758, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787802, Length=178, Percent_Identity=29.2134831460674, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=172, Percent_Identity=29.0697674418605, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=27.4725274725275, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788381, Length=184, Percent_Identity=27.7173913043478, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 74653; Mature: 74653

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50293 TPR_REGION ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHFEEFAFINRLKLIPFKTLRYLFPIVFGAMCSTSSFSADHANKESYLRHHISIKDDPM
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCH
LEFYFDSIGKPRSIKSNDFTLPADASPDSQALYYFARIYLERYEGVPIPELPDLVEFGKQ
HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCC
HDLPWVIAEAKLNQAVELIEADEVWQGELLLHDVINISRQIGYNSLQGRAYRWLGNAEVQ
CCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHH
RAQVQTGLKRYRTAYDLLEGSEFEIQIAMTLNNIASLYMELSDWDRAKTYLDQAINGYLN
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SDDKYDNSLFLAIMYANLSVINYGMEKYEESERYFEQAAQLSMATGSVRIKHNSVSNLSQ
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
LLSTLGKMEESYQLAQTCLELPNPQNLKGLKAACHEAFAEAYLKDGKYEQAIESAKTALE
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DLSETASAETKQQMDLYLVLARANQELKQFEKAFDNLGRLRNLEKSFDSHVHGDEMINIK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
LDLEAKLAQKELTLLEAKNALQASELESQRYREIFYFLIAAAIGFWLFRYIRQMNKINEE
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAQQNTTDPLTKVHNRRYLPSWLDQMARRSPARKFALAVIDIDHFKAFNDQYGHDLGDKM
HHHCCCCCHHHHHHCCCCCHHHHHHHHHHCCHHHHEEEEEEHHHHHHHHHHCCCCHHHHH
LLHVARILDEATRAGDLLVRWGGEEFVLLFEIRHADDCAKTLDRLRLAVENNNLEVDSES
HHHHHHHHHHHHCCCCEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHEECCCCEECHHH
LGATISLGAVNELSAQSIKQEWDQWFFAADQALYDAKQSGRNQYQIHSTS
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
>Mature Secondary Structure
MFHFEEFAFINRLKLIPFKTLRYLFPIVFGAMCSTSSFSADHANKESYLRHHISIKDDPM
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCH
LEFYFDSIGKPRSIKSNDFTLPADASPDSQALYYFARIYLERYEGVPIPELPDLVEFGKQ
HHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCC
HDLPWVIAEAKLNQAVELIEADEVWQGELLLHDVINISRQIGYNSLQGRAYRWLGNAEVQ
CCCCEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCHHH
RAQVQTGLKRYRTAYDLLEGSEFEIQIAMTLNNIASLYMELSDWDRAKTYLDQAINGYLN
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SDDKYDNSLFLAIMYANLSVINYGMEKYEESERYFEQAAQLSMATGSVRIKHNSVSNLSQ
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
LLSTLGKMEESYQLAQTCLELPNPQNLKGLKAACHEAFAEAYLKDGKYEQAIESAKTALE
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
DLSETASAETKQQMDLYLVLARANQELKQFEKAFDNLGRLRNLEKSFDSHVHGDEMINIK
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
LDLEAKLAQKELTLLEAKNALQASELESQRYREIFYFLIAAAIGFWLFRYIRQMNKINEE
ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAQQNTTDPLTKVHNRRYLPSWLDQMARRSPARKFALAVIDIDHFKAFNDQYGHDLGDKM
HHHCCCCCHHHHHHCCCCCHHHHHHHHHHCCHHHHEEEEEEHHHHHHHHHHCCCCHHHHH
LLHVARILDEATRAGDLLVRWGGEEFVLLFEIRHADDCAKTLDRLRLAVENNNLEVDSES
HHHHHHHHHHHHCCCCEEEEECCCEEEEEEEECCHHHHHHHHHHHHHHEECCCCEECHHH
LGATISLGAVNELSAQSIKQEWDQWFFAADQALYDAKQSGRNQYQIHSTS
CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]