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The map label for this gene is ldcA [C]

Identifier: 156976636

GI number: 156976636

Start: 632510

End: 633505

Strand: Direct

Name: ldcA [C]

Synonym: VIBHAR_05410

Alternate gene names: 156976636

Gene position: 632510-633505 (Clockwise)

Preceding gene: 156976634

Following gene: 156976640

Centisome position: 28.7

GC content: 46.79

Gene sequence:

>996_bases
ATGAGCATTCCTAAACCATTACAAAAAGGCGACACCATCGGCTTTTTCTCTCCCTCATCTCCAGCCACGGTATTTGCTCC
AGAACGTTTTGAGCGCGCTAAAGCGTATGTGGAAGCACATGGTTACCAGGTAAAAGCAGGCTGCTTAACGGGTAAAACTG
ACCAATATCGCTCGGGTTCGATTCAAGAGCGAGTAGAAGAATTGAATGCGCTGATTCGTGATCCCGAAGTGCGCTGTATT
ATGTCTACCATTGGTGGTTATAACAGTAACTCATTGCTACCTTACATTGATTACGAGGCGCTGAAGCAAGATCCCAAGAT
CATTGTTGGTTATTCGGATATGACGGCTCTGCTCATGGGCATTTATGCACAAACTGGCATCGTTACTTTCTATGGTCCTG
CTTTGGTGGCCTCTCTGGGTGAATTCCCGCCATTGGTGGACGAGACCTTCGCTTCGTTCGAATCGATAGTGAATACATTA
GTTGGCTTGGAGCATCAATACACAATGCCACAAGGTTGGACGGATGAATGGATAGAGTGGGGCGAGCAAGACCGCGCAAA
GCAAACCTTGCAAAACCATTGGCATTTCAAAGGCGAAGGCAAGATCACTGGGCGTTTGATTGGTGGCAACCTTAATACCA
TGACAGGCATCTGGGCAAGTGAGTTTATGCCGAGTATCGAACAAGGCGATATCTTGCTGGTGGAAGATTGTTTGCAGGGC
ATTGAAACGGTCGAACGCTCTTTTGCGTTGCTTAAGCTTTCTGGTGTGTTTGATAAAGTCAGTGCGGTTGTTCTTGGCAA
GCATGAAAAGTTCAACGATAAAGGCACAGGACGAGCACCTATAGACGTGTTGCTAGAAGTGCTTAACGGTCAACCACTAC
CGATTTTGTATGACTTTGATAGCTGCCATACTCACCCAATGCTCACCGTTCCATTGGGATCGACCATGACGCTCGATTTT
GACAATGAAACGGTAGCAGTGAGTTTAAAGAGCTAG

Upstream 100 bases:

>100_bases
CTATCGTTTTAAAAAACAAAAGGTTATTGTTAAGTTTAGATTGTTCTGCTTAGATTGTACGAAAATAAATCAACCATGTA
TCACAAAACAAGGACGAGCC

Downstream 100 bases:

>100_bases
CTTTTTTGACTAGTTCGTCTGAGAAAACTAGTTCTCCTCAAGACGAAAGATTTTGCCGCTGTCGGTGGAAAAGTAGATAT
AACCATCGGGGCTGATGGTT

Product: muramoyltetrapeptide carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSIPKPLQKGDTIGFFSPSSPATVFAPERFERAKAYVEAHGYQVKAGCLTGKTDQYRSGSIQERVEELNALIRDPEVRCI
MSTIGGYNSNSLLPYIDYEALKQDPKIIVGYSDMTALLMGIYAQTGIVTFYGPALVASLGEFPPLVDETFASFESIVNTL
VGLEHQYTMPQGWTDEWIEWGEQDRAKQTLQNHWHFKGEGKITGRLIGGNLNTMTGIWASEFMPSIEQGDILLVEDCLQG
IETVERSFALLKLSGVFDKVSAVVLGKHEKFNDKGTGRAPIDVLLEVLNGQPLPILYDFDSCHTHPMLTVPLGSTMTLDF
DNETVAVSLKS

Sequences:

>Translated_331_residues
MSIPKPLQKGDTIGFFSPSSPATVFAPERFERAKAYVEAHGYQVKAGCLTGKTDQYRSGSIQERVEELNALIRDPEVRCI
MSTIGGYNSNSLLPYIDYEALKQDPKIIVGYSDMTALLMGIYAQTGIVTFYGPALVASLGEFPPLVDETFASFESIVNTL
VGLEHQYTMPQGWTDEWIEWGEQDRAKQTLQNHWHFKGEGKITGRLIGGNLNTMTGIWASEFMPSIEQGDILLVEDCLQG
IETVERSFALLKLSGVFDKVSAVVLGKHEKFNDKGTGRAPIDVLLEVLNGQPLPILYDFDSCHTHPMLTVPLGSTMTLDF
DNETVAVSLKS
>Mature_330_residues
SIPKPLQKGDTIGFFSPSSPATVFAPERFERAKAYVEAHGYQVKAGCLTGKTDQYRSGSIQERVEELNALIRDPEVRCIM
STIGGYNSNSLLPYIDYEALKQDPKIIVGYSDMTALLMGIYAQTGIVTFYGPALVASLGEFPPLVDETFASFESIVNTLV
GLEHQYTMPQGWTDEWIEWGEQDRAKQTLQNHWHFKGEGKITGRLIGGNLNTMTGIWASEFMPSIEQGDILLVEDCLQGI
ETVERSFALLKLSGVFDKVSAVVLGKHEKFNDKGTGRAPIDVLLEVLNGQPLPILYDFDSCHTHPMLTVPLGSTMTLDFD
NETVAVSLKS

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

Organism=Escherichia coli, GI1787441, Length=301, Percent_Identity=28.9036544850498, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 36566; Mature: 36435

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIPKPLQKGDTIGFFSPSSPATVFAPERFERAKAYVEAHGYQVKAGCLTGKTDQYRSGS
CCCCCCCCCCCEEEEECCCCCCEEECHHHHHHHHHHHHHCCEEEEECEECCCCCCCCCCC
IQERVEELNALIRDPEVRCIMSTIGGYNSNSLLPYIDYEALKQDPKIIVGYSDMTALLMG
HHHHHHHHHHHHCCCCCEEHHHHHCCCCCCCCCEEECHHHHCCCCCEEEECCHHHHHHHH
IYAQTGIVTFYGPALVASLGEFPPLVDETFASFESIVNTLVGLEHQYTMPQGWTDEWIEW
HHHHCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHC
GEQDRAKQTLQNHWHFKGEGKITGRLIGGNLNTMTGIWASEFMPSIEQGDILLVEDCLQG
CCHHHHHHHHHHCCEECCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHH
IETVERSFALLKLSGVFDKVSAVVLGKHEKFNDKGTGRAPIDVLLEVLNGQPLPILYDFD
HHHHHHHHHHHEEHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECC
SCHTHPMLTVPLGSTMTLDFDNETVAVSLKS
CCCCCCEEEEECCCEEEEEECCCEEEEEECC
>Mature Secondary Structure 
SIPKPLQKGDTIGFFSPSSPATVFAPERFERAKAYVEAHGYQVKAGCLTGKTDQYRSGS
CCCCCCCCCCEEEEECCCCCCEEECHHHHHHHHHHHHHCCEEEEECEECCCCCCCCCCC
IQERVEELNALIRDPEVRCIMSTIGGYNSNSLLPYIDYEALKQDPKIIVGYSDMTALLMG
HHHHHHHHHHHHCCCCCEEHHHHHCCCCCCCCCEEECHHHHCCCCCEEEECCHHHHHHHH
IYAQTGIVTFYGPALVASLGEFPPLVDETFASFESIVNTLVGLEHQYTMPQGWTDEWIEW
HHHHCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHC
GEQDRAKQTLQNHWHFKGEGKITGRLIGGNLNTMTGIWASEFMPSIEQGDILLVEDCLQG
CCHHHHHHHHHHCCEECCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEHHHHHHH
IETVERSFALLKLSGVFDKVSAVVLGKHEKFNDKGTGRAPIDVLLEVLNGQPLPILYDFD
HHHHHHHHHHHEEHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECC
SCHTHPMLTVPLGSTMTLDFDNETVAVSLKS
CCCCCCEEEEECCCEEEEEECCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]