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The map label for this gene is yiaD [H]

Identifier: 156976618

GI number: 156976618

Start: 617257

End: 617880

Strand: Direct

Name: yiaD [H]

Synonym: VIBHAR_05392

Alternate gene names: 156976618

Gene position: 617257-617880 (Clockwise)

Preceding gene: 156976615

Following gene: 156976623

Centisome position: 28.01

GC content: 48.4

Gene sequence:

>624_bases
ATGAAGCATTGGTTTTTAGTTGCATGTGGTTTCTTAGCCGGATGCACCAGCATTAATTCAGATATGGTTCCGGGCGGCAA
CATGTTAGACACCGCTCCTCGCACTAATTCAGAGCTTAGACATCCAGAGTGGGGTTATGCAAAGTCATACTCTTCTGCGC
CTCGTTATGTTGCTCAGGTACCGAGCTCAATGGAAAAAAAGTCACAGGGCGTGATGTCATTGGAGATGTTCTTAAATAGA
CATCAGATCGCCCATGAAACCATCAGTGGCGAACATCTTATGATACGTTTGAAGGAGCAAGTTCATTTTCAAACTGGCTC
TGCAAGGTTATTGGCGCAATCTCAAGACTGGATACAGAGCCTTGGGCATTATCTTGCCGGACGCACTGACGTCGATGTGG
TGATTGATGGCCATGCGGACAGCACGGGGGCGGCGAGCTTCAATGATTCGTTGTCTGAGAAACGTGCGCGTGAAGTTGAA
AAGCAGCTACTTGCGACTAGCTTGCCACGCCAAAGAGTGTTCTCTCGAGGCTTTGGTGAATACGTACCGCAGTGTAGTAA
CGCAACGGCGAGTGGTAAAGCATGTAATCGTCGAGTGGAGCTGATGCTGATTGTCGATCAGTAA

Upstream 100 bases:

>100_bases
ATAGGTGCTTGCTAAATGAAGATAAATAGCAATGGGCACTAAAGTTTGGGCAATTTAAGCCGAAACAGTGAACAAGAATT
CATTCTACGTTGGTAACGGT

Downstream 100 bases:

>100_bases
CCACCATTTTAAGTCATTGAGATAAAAGAAAAGAGGCACCGTTTGGTGCCTCTTTTACATCCGCCAATGTTCTTAGGGGG
AACTAGGCAAATTCTTTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MKHWFLVACGFLAGCTSINSDMVPGGNMLDTAPRTNSELRHPEWGYAKSYSSAPRYVAQVPSSMEKKSQGVMSLEMFLNR
HQIAHETISGEHLMIRLKEQVHFQTGSARLLAQSQDWIQSLGHYLAGRTDVDVVIDGHADSTGAASFNDSLSEKRAREVE
KQLLATSLPRQRVFSRGFGEYVPQCSNATASGKACNRRVELMLIVDQ

Sequences:

>Translated_207_residues
MKHWFLVACGFLAGCTSINSDMVPGGNMLDTAPRTNSELRHPEWGYAKSYSSAPRYVAQVPSSMEKKSQGVMSLEMFLNR
HQIAHETISGEHLMIRLKEQVHFQTGSARLLAQSQDWIQSLGHYLAGRTDVDVVIDGHADSTGAASFNDSLSEKRAREVE
KQLLATSLPRQRVFSRGFGEYVPQCSNATASGKACNRRVELMLIVDQ
>Mature_207_residues
MKHWFLVACGFLAGCTSINSDMVPGGNMLDTAPRTNSELRHPEWGYAKSYSSAPRYVAQVPSSMEKKSQGVMSLEMFLNR
HQIAHETISGEHLMIRLKEQVHFQTGSARLLAQSQDWIQSLGHYLAGRTDVDVVIDGHADSTGAASFNDSLSEKRAREVE
KQLLATSLPRQRVFSRGFGEYVPQCSNATASGKACNRRVELMLIVDQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=117, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788957, Length=108, Percent_Identity=35.1851851851852, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22973; Mature: 22973

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHWFLVACGFLAGCTSINSDMVPGGNMLDTAPRTNSELRHPEWGYAKSYSSAPRYVAQV
CCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
PSSMEKKSQGVMSLEMFLNRHQIAHETISGEHLMIRLKEQVHFQTGSARLLAQSQDWIQS
HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCHHEEECCHHHHHH
LGHYLAGRTDVDVVIDGHADSTGAASFNDSLSEKRAREVEKQLLATSLPRQRVFSRGFGE
HHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHH
YVPQCSNATASGKACNRRVELMLIVDQ
HCCCCCCCCCCCHHCCCEEEEEEEECC
>Mature Secondary Structure
MKHWFLVACGFLAGCTSINSDMVPGGNMLDTAPRTNSELRHPEWGYAKSYSSAPRYVAQV
CCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
PSSMEKKSQGVMSLEMFLNRHQIAHETISGEHLMIRLKEQVHFQTGSARLLAQSQDWIQS
HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHCCCCCHHEEECCHHHHHH
LGHYLAGRTDVDVVIDGHADSTGAASFNDSLSEKRAREVEKQLLATSLPRQRVFSRGFGE
HHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHH
YVPQCSNATASGKACNRRVELMLIVDQ
HCCCCCCCCCCCHHCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]