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The map label for this gene is napF [H]

Identifier: 156976605

GI number: 156976605

Start: 605909

End: 606394

Strand: Reverse

Name: napF [H]

Synonym: VIBHAR_05379

Alternate gene names: 156976605

Gene position: 606394-605909 (Counterclockwise)

Preceding gene: 156976608

Following gene: 156976604

Centisome position: 27.51

GC content: 47.74

Gene sequence:

>486_bases
GTGGTAGACCTTTCGAGAAGAAGACTTTTTGCACGTAAAACGCAACCGGACAATTCGGTACGTCTTCCTTGGTTAGCTAA
GCCAACTCAATTCACAGACGATTGCACTCGTTGCGGTAAATGCATCGAGGCGTGCGAAACGAAAATTATAACAAAAAGCG
ATGGTGGGTTTCCTGCTGTCGATTTTTCTATTGATGAATGCACCTTTTGTTACCAATGCGCCGAGGCTTGCCCAGAGCCG
CTGTTTTTAGCGGGAGCGGAACAGCCTTGGCAGGCAAAAGCGAGCATCAATGATAGCTGTTTAGCAAAACAAAATGTCGA
ATGCCGAAGCTGTGGAGACATGTGCGACCCGATGGCAATTCAGTTCAAGCTAGAGCTTGGCAAAGTAGCACAACCAAGTT
TAGACCTTGATGAGTGTAACGGCTGCGGCGCCTGTGTCTCAGTGTGCCCGACTTCATCCATTAATGTGAGCAATATAACA
GCCTAG

Upstream 100 bases:

>100_bases
CATATATGTCAAAAACTACACTCTAATGTACTTAAATGACAATTTATTAATGGAATTGTGGACTATGCGTATCTGGGGTT
TCAATTTCCGAGGTGACTAA

Downstream 100 bases:

>100_bases
CCGTCAGTGGTCGGCACGAAAGGCAATAAAACGAGAGAGATGTATGTCACTAAACGAAGTGCACATTTCGAGTCTGGTAG
TCCATGTTCTGCCTGAACAT

Product: ferredoxin-type protein

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MVDLSRRRLFARKTQPDNSVRLPWLAKPTQFTDDCTRCGKCIEACETKIITKSDGGFPAVDFSIDECTFCYQCAEACPEP
LFLAGAEQPWQAKASINDSCLAKQNVECRSCGDMCDPMAIQFKLELGKVAQPSLDLDECNGCGACVSVCPTSSINVSNIT
A

Sequences:

>Translated_161_residues
MVDLSRRRLFARKTQPDNSVRLPWLAKPTQFTDDCTRCGKCIEACETKIITKSDGGFPAVDFSIDECTFCYQCAEACPEP
LFLAGAEQPWQAKASINDSCLAKQNVECRSCGDMCDPMAIQFKLELGKVAQPSLDLDECNGCGACVSVCPTSSINVSNIT
A
>Mature_161_residues
MVDLSRRRLFARKTQPDNSVRLPWLAKPTQFTDDCTRCGKCIEACETKIITKSDGGFPAVDFSIDECTFCYQCAEACPEP
LFLAGAEQPWQAKASINDSCLAKQNVECRSCGDMCDPMAIQFKLELGKVAQPSLDLDECNGCGACVSVCPTSSINVSNIT
A

Specific function: Involved in electron transfer [H]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1788536, Length=161, Percent_Identity=45.3416149068323, Blast_Score=157, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004496 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 17519; Mature: 17519

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
11.8 %Cys+Met (Translated Protein)
9.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
11.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDLSRRRLFARKTQPDNSVRLPWLAKPTQFTDDCTRCGKCIEACETKIITKSDGGFPAV
CCCCHHHHHHHHCCCCCCCEECCEECCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCEE
DFSIDECTFCYQCAEACPEPLFLAGAEQPWQAKASINDSCLAKQNVECRSCGDMCDPMAI
ECCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCEEE
QFKLELGKVAQPSLDLDECNGCGACVSVCPTSSINVSNITA
EEEEECCCCCCCCCCHHHCCCCCHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MVDLSRRRLFARKTQPDNSVRLPWLAKPTQFTDDCTRCGKCIEACETKIITKSDGGFPAV
CCCCHHHHHHHHCCCCCCCEECCEECCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCEE
DFSIDECTFCYQCAEACPEPLFLAGAEQPWQAKASINDSCLAKQNVECRSCGDMCDPMAI
ECCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHCCCCCCEEE
QFKLELGKVAQPSLDLDECNGCGACVSVCPTSSINVSNITA
EEEEECCCCCCCCCCHHHCCCCCHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]