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The map label for this gene is ygjR [H]

Identifier: 156976570

GI number: 156976570

Start: 574898

End: 575887

Strand: Direct

Name: ygjR [H]

Synonym: VIBHAR_05344

Alternate gene names: 156976570

Gene position: 574898-575887 (Clockwise)

Preceding gene: 156976569

Following gene: 156976573

Centisome position: 26.08

GC content: 46.06

Gene sequence:

>990_bases
ATGTTCAAACTTGCTGTGATCGGGACGAACTGGATCTCTCAACAATTTGTTGAAGCGGCGATTCAGACCAAAGAGTTTTA
TCTTCACGCCGTCTATTCTCGTGATGTAGAGAAAGCACGCGAATTTGGCTCACCTTACAACGTAGAAGCTTATTACGATA
ACCTCGATGCTTTAGGGGCGGATGAAAGCGTTGATGCAGTATACATCGCGAGCCCAAACTCATTTCATGCGCCTCAGGCA
GTGCAGATGCTCAAAGCGGGCAAGCACGTGATTTGTGAAAAGCCGATGGCATCAAATTATTCTCTTGCTCAAGCGATGTT
TAAAACGGCTGAAGAAAATAATGTCGTGTTGTTTGAAGCCTTCATGTCGCCATACACTCCGAATTTCCAAGTATTAAAAG
ACAGTCTACCGACGATCGCGCCTCTTTGTCATGCTACGATCAGTTACTGTCAGTACTCTGCTCGCTATCAGAAATATCTA
AATGGTGAGAACCCAAACACCTTCAATCCTGATTTCTCCAATGGCTCCATCATGGACATTGGTTACTACTGCGTTGGTTC
TGCCGTTGAGTTGTTTGGCGAGCCGAATAGTGTACAAGCGAGTGCGCATATTTTGTCTTCTGGCGTTGATGGTTGTGGCA
GCGTGACCTTGGCTTATGACTGCTTTAATGTGAACCTATTGCACTCGAAGGTGAGTGATTCACTCATCCCAAGTGAGTTC
CAAGGTGAACAGGGTAGTCTGCTGGTGGATATGATTGCTACAGGGCGTGGTGTTGAGCGCATTTTGCGTGGTGAGGACAA
AGAAGTACTCACGTTACCTCAAGAAGAGAACCACATGTACTATGAAGTGCAGGCATTTGCTAAGCAACTGAAACTGGGTT
CGATTGCGCCTCAAATGAAGCAACGTTCATTGACGGTCGCGAAAGTGCTAACTGAGGTAAGAAGACAAACAGGCGTTGTA
TTCCCTGCGGATAAAGTCGCACTAAACTAG

Upstream 100 bases:

>100_bases
ATCAACTGTTTGAGTTGTTTAATGAACTAAAGCTTGCTTAAATCGTGTCTGCGAGCCGAACTCCTTACGGCTTCCAGAAC
GATAAAGAAAAGGAAGTAAT

Downstream 100 bases:

>100_bases
GCGCTTGCTTTTCTAAAGCTTTAAAACAGCATCATGCTAAATGGTCTAAAGAACAAAGCCCTCATCGTGAGGGCTTTGTT
TTATTTGGCTCTCTTAAGCC

Product: NAD-dependent oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MFKLAVIGTNWISQQFVEAAIQTKEFYLHAVYSRDVEKAREFGSPYNVEAYYDNLDALGADESVDAVYIASPNSFHAPQA
VQMLKAGKHVICEKPMASNYSLAQAMFKTAEENNVVLFEAFMSPYTPNFQVLKDSLPTIAPLCHATISYCQYSARYQKYL
NGENPNTFNPDFSNGSIMDIGYYCVGSAVELFGEPNSVQASAHILSSGVDGCGSVTLAYDCFNVNLLHSKVSDSLIPSEF
QGEQGSLLVDMIATGRGVERILRGEDKEVLTLPQEENHMYYEVQAFAKQLKLGSIAPQMKQRSLTVAKVLTEVRRQTGVV
FPADKVALN

Sequences:

>Translated_329_residues
MFKLAVIGTNWISQQFVEAAIQTKEFYLHAVYSRDVEKAREFGSPYNVEAYYDNLDALGADESVDAVYIASPNSFHAPQA
VQMLKAGKHVICEKPMASNYSLAQAMFKTAEENNVVLFEAFMSPYTPNFQVLKDSLPTIAPLCHATISYCQYSARYQKYL
NGENPNTFNPDFSNGSIMDIGYYCVGSAVELFGEPNSVQASAHILSSGVDGCGSVTLAYDCFNVNLLHSKVSDSLIPSEF
QGEQGSLLVDMIATGRGVERILRGEDKEVLTLPQEENHMYYEVQAFAKQLKLGSIAPQMKQRSLTVAKVLTEVRRQTGVV
FPADKVALN
>Mature_329_residues
MFKLAVIGTNWISQQFVEAAIQTKEFYLHAVYSRDVEKAREFGSPYNVEAYYDNLDALGADESVDAVYIASPNSFHAPQA
VQMLKAGKHVICEKPMASNYSLAQAMFKTAEENNVVLFEAFMSPYTPNFQVLKDSLPTIAPLCHATISYCQYSARYQKYL
NGENPNTFNPDFSNGSIMDIGYYCVGSAVELFGEPNSVQASAHILSSGVDGCGSVTLAYDCFNVNLLHSKVSDSLIPSEF
QGEQGSLLVDMIATGRGVERILRGEDKEVLTLPQEENHMYYEVQAFAKQLKLGSIAPQMKQRSLTVAKVLTEVRRQTGVV
FPADKVALN

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=350, Percent_Identity=26, Blast_Score=97, Evalue=2e-20,
Organism=Escherichia coli, GI145693182, Length=328, Percent_Identity=51.5243902439024, Blast_Score=340, Evalue=1e-94,
Organism=Saccharomyces cerevisiae, GI6323975, Length=180, Percent_Identity=29.4444444444444, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24581117, Length=344, Percent_Identity=22.9651162790698, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24581115, Length=196, Percent_Identity=27.5510204081633, Blast_Score=75, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36357; Mature: 36357

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKLAVIGTNWISQQFVEAAIQTKEFYLHAVYSRDVEKAREFGSPYNVEAYYDNLDALGA
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHCCC
DESVDAVYIASPNSFHAPQAVQMLKAGKHVICEKPMASNYSLAQAMFKTAEENNVVLFEA
CCCCCEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEEEEH
FMSPYTPNFQVLKDSLPTIAPLCHATISYCQYSARYQKYLNGENPNTFNPDFSNGSIMDI
HCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE
GYYCVGSAVELFGEPNSVQASAHILSSGVDGCGSVTLAYDCFNVNLLHSKVSDSLIPSEF
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEHHHHHHCCCCCCCC
QGEQGSLLVDMIATGRGVERILRGEDKEVLTLPQEENHMYYEVQAFAKQLKLGSIAPQMK
CCCCCCEEEEEHHCCCHHHHHHCCCCCEEEECCCCCCCEEEHHHHHHHHHHCCCCCHHHH
QRSLTVAKVLTEVRRQTGVVFPADKVALN
HHHHHHHHHHHHHHHHCCCCCCCHHHCCC
>Mature Secondary Structure
MFKLAVIGTNWISQQFVEAAIQTKEFYLHAVYSRDVEKAREFGSPYNVEAYYDNLDALGA
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHCCC
DESVDAVYIASPNSFHAPQAVQMLKAGKHVICEKPMASNYSLAQAMFKTAEENNVVLFEA
CCCCCEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCCEEEEEH
FMSPYTPNFQVLKDSLPTIAPLCHATISYCQYSARYQKYLNGENPNTFNPDFSNGSIMDI
HCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE
GYYCVGSAVELFGEPNSVQASAHILSSGVDGCGSVTLAYDCFNVNLLHSKVSDSLIPSEF
HHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEHHHHHHCCCCCCCC
QGEQGSLLVDMIATGRGVERILRGEDKEVLTLPQEENHMYYEVQAFAKQLKLGSIAPQMK
CCCCCCEEEEEHHCCCHHHHHHCCCCCEEEECCCCCCCEEEHHHHHHHHHHCCCCCHHHH
QRSLTVAKVLTEVRRQTGVVFPADKVALN
HHHHHHHHHHHHHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]