| Definition | Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequence. |
|---|---|
| Accession | NC_009784 |
| Length | 2,204,018 |
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The map label for this gene is 156976555
Identifier: 156976555
GI number: 156976555
Start: 561824
End: 563233
Strand: Reverse
Name: 156976555
Synonym: VIBHAR_05329
Alternate gene names: NA
Gene position: 563233-561824 (Counterclockwise)
Preceding gene: 156976559
Following gene: 156976554
Centisome position: 25.55
GC content: 46.31
Gene sequence:
>1410_bases GTGACGATCCCTAGCGTCGTTTCCAAAAAGTTTCCAGCCAAACTGCAAGTGGCTGCTGATGCTGGTTTTACCCACTACCT TGAAGTCTCCCTTTCGCAAGACGGGAACAATGCGTCGTTCCATATTATCGCGATGGATGACGGGGCGAATGATGAAAAAA TATTTCGTGCCGCCAAAATCGTTCAGCACCTACTCACAAACCAGCCAAATTCGAAGTATGGTGCCGACAAATCTAGTATC GCAAAGACACTAGCCGAGCGTGATGCAACATTAATGCTGACAGAAAACGACGACCAGAATGACGAAATGCTCACCAAAAT TTTCGTCAGTGAGTTGCTTCGTCAAGATAAATTGGACGACGCGATTGCAGATTCTGGCTTACCACAATCCTTTGATACCG GCTCATTAGAAAACTTTATTGCAACCATGATGGTGCTTAATGAAGACGACATGGACACGCTTATCGAGTCCATTGCATTA ACGTTGATGAGCAGCGGGGATACACCAAACTGGTTGATGAACAGCCAATCCTTGATGTACCGCGAACTGACGGTTGAAGG CGATTGTCACTACATGAGTAACTTTGCCGATTACTGTGCCAATCTGGGTGAACATGCCGACCGAGATGCCGCTTTTGAAG AGATTCTACATTTGGTCCAAGCGCAAGGCATTGCTCCTAACGCATCGACTTCCTCATTACAAAAAGCCATTCAAGCGCAT GCTCTAAGCATTCATAACGACATCCAATCAGGTAAGCCTACGGTGTGGCGCCCAACCCAGAGTGACTGGGAAGATTGGGA GTCTGACGACTTCGATCCAGAACGCGTTAAGCTAACAGGCCCTTCTTACTCTCACGAATATTTTGCTGCTGCTTTTGAAG CTTACATGAGCGTTGCAAAAGCAAACGGGCATGGTTTAGATGGCTACCAAGCGTTAACACGTGAAGAAATGCAAACCCAA GATCCACAAGCGATTGATTGGATTGACGGTTTGTTCCACGACTACCTGCAATACACCGCAAGCATCGACTCTGCAGGCGT CAAACTCTACACAGAAAAAACGAATCCAGGCTCGGTTCCTACCTTCCGCATGGCACCAAACAAACATGGTTTAGTAGAAG CCTACACCTACAAGTCTCAATGGCTGACAAAAGTGAAGATCGTTGGCGACGACGCGATGAATGTCATCGGTAATGACCAA GACAACACATTTGAAGGCAACCATAAAAACAACAGTATTTATGGTGAGGGAGGCGTCAACACTTACGTCGTGCGACACAA ACTGGCTGAATGTATCGTTATCAAAGCGAAAAACGTCTCTGTTGAGTGCCCTAATACAGGCATTGACGAGTTGTACGACA TTCAGAACATCCAGTTCACCGATCAAACTCTAGATGTAACCAAGCTATAA
Upstream 100 bases:
>100_bases ACTTTGTACAGTAAGCCTAACTGCCTGCGGTGGTAGTGACTCAAATTCAAAGTCACCAACAACCACACTGCCACCCCAAC CAGCTCCAACATTGAAAACC
Downstream 100 bases:
>100_bases ACAATGAAAAACATGAAGAAACTTACTCTACTCGCTCCCCTATTCCTTGTTGGTTGTGGTGGCCTTGCTGTCATGGATCG TACTGATGCAGTAAAAGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MTIPSVVSKKFPAKLQVAADAGFTHYLEVSLSQDGNNASFHIIAMDDGANDEKIFRAAKIVQHLLTNQPNSKYGADKSSI AKTLAERDATLMLTENDDQNDEMLTKIFVSELLRQDKLDDAIADSGLPQSFDTGSLENFIATMMVLNEDDMDTLIESIAL TLMSSGDTPNWLMNSQSLMYRELTVEGDCHYMSNFADYCANLGEHADRDAAFEEILHLVQAQGIAPNASTSSLQKAIQAH ALSIHNDIQSGKPTVWRPTQSDWEDWESDDFDPERVKLTGPSYSHEYFAAAFEAYMSVAKANGHGLDGYQALTREEMQTQ DPQAIDWIDGLFHDYLQYTASIDSAGVKLYTEKTNPGSVPTFRMAPNKHGLVEAYTYKSQWLTKVKIVGDDAMNVIGNDQ DNTFEGNHKNNSIYGEGGVNTYVVRHKLAECIVIKAKNVSVECPNTGIDELYDIQNIQFTDQTLDVTKL
Sequences:
>Translated_469_residues MTIPSVVSKKFPAKLQVAADAGFTHYLEVSLSQDGNNASFHIIAMDDGANDEKIFRAAKIVQHLLTNQPNSKYGADKSSI AKTLAERDATLMLTENDDQNDEMLTKIFVSELLRQDKLDDAIADSGLPQSFDTGSLENFIATMMVLNEDDMDTLIESIAL TLMSSGDTPNWLMNSQSLMYRELTVEGDCHYMSNFADYCANLGEHADRDAAFEEILHLVQAQGIAPNASTSSLQKAIQAH ALSIHNDIQSGKPTVWRPTQSDWEDWESDDFDPERVKLTGPSYSHEYFAAAFEAYMSVAKANGHGLDGYQALTREEMQTQ DPQAIDWIDGLFHDYLQYTASIDSAGVKLYTEKTNPGSVPTFRMAPNKHGLVEAYTYKSQWLTKVKIVGDDAMNVIGNDQ DNTFEGNHKNNSIYGEGGVNTYVVRHKLAECIVIKAKNVSVECPNTGIDELYDIQNIQFTDQTLDVTKL >Mature_468_residues TIPSVVSKKFPAKLQVAADAGFTHYLEVSLSQDGNNASFHIIAMDDGANDEKIFRAAKIVQHLLTNQPNSKYGADKSSIA KTLAERDATLMLTENDDQNDEMLTKIFVSELLRQDKLDDAIADSGLPQSFDTGSLENFIATMMVLNEDDMDTLIESIALT LMSSGDTPNWLMNSQSLMYRELTVEGDCHYMSNFADYCANLGEHADRDAAFEEILHLVQAQGIAPNASTSSLQKAIQAHA LSIHNDIQSGKPTVWRPTQSDWEDWESDDFDPERVKLTGPSYSHEYFAAAFEAYMSVAKANGHGLDGYQALTREEMQTQD PQAIDWIDGLFHDYLQYTASIDSAGVKLYTEKTNPGSVPTFRMAPNKHGLVEAYTYKSQWLTKVKIVGDDAMNVIGNDQD NTFEGNHKNNSIYGEGGVNTYVVRHKLAECIVIKAKNVSVECPNTGIDELYDIQNIQFTDQTLDVTKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52090; Mature: 51959
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIPSVVSKKFPAKLQVAADAGFTHYLEVSLSQDGNNASFHIIAMDDGANDEKIFRAAKI CCCHHHHHHCCCCEEEEEECCCCEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHH VQHLLTNQPNSKYGADKSSIAKTLAERDATLMLTENDDQNDEMLTKIFVSELLRQDKLDD HHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH AIADSGLPQSFDTGSLENFIATMMVLNEDDMDTLIESIALTLMSSGDTPNWLMNSQSLMY HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCHHEE RELTVEGDCHYMSNFADYCANLGEHADRDAAFEEILHLVQAQGIAPNASTSSLQKAIQAH EEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH ALSIHNDIQSGKPTVWRPTQSDWEDWESDDFDPERVKLTGPSYSHEYFAAAFEAYMSVAK HHHHHHHHCCCCCCEECCCCCCHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH ANGHGLDGYQALTREEMQTQDPQAIDWIDGLFHDYLQYTASIDSAGVKLYTEKTNPGSVP CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC TFRMAPNKHGLVEAYTYKSQWLTKVKIVGDDAMNVIGNDQDNTFEGNHKNNSIYGEGGVN EEEECCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCEEECCCCC TYVVRHKLAECIVIKAKNVSVECPNTGIDELYDIQNIQFTDQTLDVTKL HHHHHHHHHHEEEEEECCEEEECCCCCHHHHHHCCCCEECCCCCCEECC >Mature Secondary Structure TIPSVVSKKFPAKLQVAADAGFTHYLEVSLSQDGNNASFHIIAMDDGANDEKIFRAAKI CCHHHHHHCCCCEEEEEECCCCEEEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHH VQHLLTNQPNSKYGADKSSIAKTLAERDATLMLTENDDQNDEMLTKIFVSELLRQDKLDD HHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH AIADSGLPQSFDTGSLENFIATMMVLNEDDMDTLIESIALTLMSSGDTPNWLMNSQSLMY HHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCHHEE RELTVEGDCHYMSNFADYCANLGEHADRDAAFEEILHLVQAQGIAPNASTSSLQKAIQAH EEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH ALSIHNDIQSGKPTVWRPTQSDWEDWESDDFDPERVKLTGPSYSHEYFAAAFEAYMSVAK HHHHHHHHCCCCCCEECCCCCCHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH ANGHGLDGYQALTREEMQTQDPQAIDWIDGLFHDYLQYTASIDSAGVKLYTEKTNPGSVP CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC TFRMAPNKHGLVEAYTYKSQWLTKVKIVGDDAMNVIGNDQDNTFEGNHKNNSIYGEGGVN EEEECCCCCCCEEEEEECCCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCEEECCCCC TYVVRHKLAECIVIKAKNVSVECPNTGIDELYDIQNIQFTDQTLDVTKL HHHHHHHHHHEEEEEECCEEEECCCCCHHHHHHCCCCEECCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA