Click here to switch to the map view.

The map label for this gene is glxA [H]

Identifier: 156976514

GI number: 156976514

Start: 525852

End: 526814

Strand: Direct

Name: glxA [H]

Synonym: VIBHAR_05287

Alternate gene names: 156976514

Gene position: 525852-526814 (Clockwise)

Preceding gene: 156976513

Following gene: 156976522

Centisome position: 23.86

GC content: 44.03

Gene sequence:

>963_bases
ATGTCTAAAATGGCAATAATTAGGTTAAAAATGACAGGTAGTATGCAAGAGTTTAATATCGCAATTGTGGATTATCCTGG
CAGTTCAAAAGCGTCGATTTATGGCTTGCTGGAGCTGTTTGAAACAGCAAATCGTGCCGCTATTGAAGTGGGGGTAGGGA
AGCGCTTTTGTACGGAAATGATCAATGGAGAAAGCACGTATACTCATAAGGATTACTCGGTCGTTTTATTACCACCTAGT
GGTGAAGAGCAATATTATTTAGCGCCCAATCAACAACTAATGGCTTGGCTATCGGGACAACATAGCGCAGGGGCAATTGT
CGCTTCAGCTTGCGCTGGTGCCTTTATTCTTGCTCATGCTGGTTTGCTGAACAACAAAACGTGCACAACGCACTGGGCAT
TAGCGGGATTGTTTAGAGAGCAATTCCCTCATGTGGCAATGAAGCAGGAGTCAATTTTAATCAACGAAGGCAGTGTTATT
ACTGCTGGTGGCATGATGTCTTGGCTTGACTTGGGGCTAGAGCTTGTTTCTCAGTTAAGTACGCCGACGGTGATGCGTTT
ACTGGGAAAGATGCTGGTAGTAGATACTGGTGCGAGAGAGCAACGCTTCTATCAGCAGTTCATGCCTAATTTGCAACATG
GAGATAGTGCGGTACTGAATGTTCAACATTACATGGCGGACCACTTCTCACAAGTGATTTCAAATCAATCTTTATCAGAA
ATCAGTTGTTTGACTGAACGAACGCTACAAAGACGTTTTCAAAAAGCCACAGGCTTGAACTTAAATCAATACCTACAACA
TCTTCGAGTGCAAAAAGCGTGTGATTTACTCGAATCGAGCAACTTAGCGTTTGAGGTGATTGCTTACCAAGTTGGGTATC
AAGATGCGAGCGCGTTTCGCAAAGTGTTCATTAAAACCATGGGATTGGCACCCAAAGCGTTCCGCGCTCGTTTCAGTGCT
TAG

Upstream 100 bases:

>100_bases
AGGAGGCATTAGCTTTTTTGATTTGACTCAGTTTGAAGTGGGCTCTAACTGTTTTGAAAAGATTCTAAATTAAAAATTGA
GCTTTCCTTAGTATTGCTCT

Downstream 100 bases:

>100_bases
TTATCGATGCACGGCTTGTTCAATATGCTGACAAATCGCTTCTGCAAGTTGGTGGCTAGCAATATTGCGTGCGACGATTT
CAGTTGCGATGTTGCCTGAT

Product: transcriptional activator FtrA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MSKMAIIRLKMTGSMQEFNIAIVDYPGSSKASIYGLLELFETANRAAIEVGVGKRFCTEMINGESTYTHKDYSVVLLPPS
GEEQYYLAPNQQLMAWLSGQHSAGAIVASACAGAFILAHAGLLNNKTCTTHWALAGLFREQFPHVAMKQESILINEGSVI
TAGGMMSWLDLGLELVSQLSTPTVMRLLGKMLVVDTGAREQRFYQQFMPNLQHGDSAVLNVQHYMADHFSQVISNQSLSE
ISCLTERTLQRRFQKATGLNLNQYLQHLRVQKACDLLESSNLAFEVIAYQVGYQDASAFRKVFIKTMGLAPKAFRARFSA

Sequences:

>Translated_320_residues
MSKMAIIRLKMTGSMQEFNIAIVDYPGSSKASIYGLLELFETANRAAIEVGVGKRFCTEMINGESTYTHKDYSVVLLPPS
GEEQYYLAPNQQLMAWLSGQHSAGAIVASACAGAFILAHAGLLNNKTCTTHWALAGLFREQFPHVAMKQESILINEGSVI
TAGGMMSWLDLGLELVSQLSTPTVMRLLGKMLVVDTGAREQRFYQQFMPNLQHGDSAVLNVQHYMADHFSQVISNQSLSE
ISCLTERTLQRRFQKATGLNLNQYLQHLRVQKACDLLESSNLAFEVIAYQVGYQDASAFRKVFIKTMGLAPKAFRARFSA
>Mature_319_residues
SKMAIIRLKMTGSMQEFNIAIVDYPGSSKASIYGLLELFETANRAAIEVGVGKRFCTEMINGESTYTHKDYSVVLLPPSG
EEQYYLAPNQQLMAWLSGQHSAGAIVASACAGAFILAHAGLLNNKTCTTHWALAGLFREQFPHVAMKQESILINEGSVIT
AGGMMSWLDLGLELVSQLSTPTVMRLLGKMLVVDTGAREQRFYQQFMPNLQHGDSAVLNVQHYMADHFSQVISNQSLSEI
SCLTERTLQRRFQKATGLNLNQYLQHLRVQKACDLLESSNLAFEVIAYQVGYQDASAFRKVFIKTMGLAPKAFRARFSA

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35464; Mature: 35333

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKMAIIRLKMTGSMQEFNIAIVDYPGSSKASIYGLLELFETANRAAIEVGVGKRFCTEM
CCCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
INGESTYTHKDYSVVLLPPSGEEQYYLAPNQQLMAWLSGQHSAGAIVASACAGAFILAHA
HCCCCCEEECCEEEEEECCCCCCCEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
GLLNNKTCTTHWALAGLFREQFPHVAMKQESILINEGSVITAGGMMSWLDLGLELVSQLS
CCCCCCCCHHHHHHHHHHHHHCCCHHCCCCEEEEECCCEEEECHHHHHHHHHHHHHHHCC
TPTVMRLLGKMLVVDTGAREQRFYQQFMPNLQHGDSAVLNVQHYMADHFSQVISNQSLSE
CHHHHHHHHHHHEECCCCHHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHHHHHCCCCHHH
ISCLTERTLQRRFQKATGLNLNQYLQHLRVQKACDLLESSNLAFEVIAYQVGYQDASAFR
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHCCCCHHHHH
KVFIKTMGLAPKAFRARFSA
HHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure 
SKMAIIRLKMTGSMQEFNIAIVDYPGSSKASIYGLLELFETANRAAIEVGVGKRFCTEM
CCEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
INGESTYTHKDYSVVLLPPSGEEQYYLAPNQQLMAWLSGQHSAGAIVASACAGAFILAHA
HCCCCCEEECCEEEEEECCCCCCCEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
GLLNNKTCTTHWALAGLFREQFPHVAMKQESILINEGSVITAGGMMSWLDLGLELVSQLS
CCCCCCCCHHHHHHHHHHHHHCCCHHCCCCEEEEECCCEEEECHHHHHHHHHHHHHHHCC
TPTVMRLLGKMLVVDTGAREQRFYQQFMPNLQHGDSAVLNVQHYMADHFSQVISNQSLSE
CHHHHHHHHHHHEECCCCHHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHHHHHCCCCHHH
ISCLTERTLQRRFQKATGLNLNQYLQHLRVQKACDLLESSNLAFEVIAYQVGYQDASAFR
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHCCCCHHHHH
KVFIKTMGLAPKAFRARFSA
HHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]