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The map label for this gene is tnpA [H]

Identifier: 156976499

GI number: 156976499

Start: 516410

End: 517141

Strand: Direct

Name: tnpA [H]

Synonym: VIBHAR_05272

Alternate gene names: 156976499

Gene position: 516410-517141 (Clockwise)

Preceding gene: 156976498

Following gene: 156976503

Centisome position: 23.43

GC content: 42.62

Gene sequence:

>732_bases
ATGCAAAGTCGTTGTCTAGAAGAGCATGCTCAAAAGCTTTACGACTATGCGCAAGCGTTACCAAGCGTCGAGACAAAAGC
GCTTACCATCCCCCAAAAAGGAGGGAGAAAAGCGAGAAATGTAAAGCTTGATGTTAAATATGGTCAGGTGACATTAAAGG
CTCCGGCAAACAAAAAAGAGCACGCAGGCATACCTGTTTATTATGTTGGTTGCCTTGAGCAAGGGACATCAAAAGACAAG
TTAGCATGGCATCTCTTGACGTCGGAGCCAATAAACAACGTTGACGATGCCATGAGAATTATCGGTTATTACGAGCGCCG
ATGGCTGATTGAAGATTTCCATAAAGTCTGGAAAAGTGAAGGGACAGATGTGGAGTCACTCAGGCTACAAAGTAAAGATA
ACTTAGAGAGATTAAGTGTCATCTATGCCTTTGTTGCTACGCGTTTATTGGCATTACGCTTCATGAAAGAAGTTGATGAG
CTAACGAAAGAAAGTTGTGAAAAGGTATTGGGCCAAAAAGCTTGGAAGCTACTATGGTTGAAACTAGAAAGTAAAACGTT
ACCTAAAGAAGTGCCCGATATGGGTTGGGCGTACAAAAATCTCGCTAAATTAGGCGGTTGGAAAGATACCAAAAGGACGG
GTAGAGCTTCAATAAAGGTGCTTTGGGAAGGATGGTTTAAATTACAAACCATCCTTGAGGGCTACGAACTCGCAATGTCT
CTTGATCACTAG

Upstream 100 bases:

>100_bases
GCGCTTGAAGATACAACAACGCTCAGCTTTCCGCATCGAAGTATCATTCGAATACTTAACTTATAAGCGTCAACATCAGC
AGCGTTTTGTCGTTCGCTCA

Downstream 100 bases:

>100_bases
ACTTGTGATCAAGAGACAGCCCAGCGTGGGAGGTTTTTGCTTTTATTGAGGCTGTTCTTTGCAAGGGTTCAGCTCTTGAA
CGTTTTCTTCGTTGAAGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: Tnp [H]

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MQSRCLEEHAQKLYDYAQALPSVETKALTIPQKGGRKARNVKLDVKYGQVTLKAPANKKEHAGIPVYYVGCLEQGTSKDK
LAWHLLTSEPINNVDDAMRIIGYYERRWLIEDFHKVWKSEGTDVESLRLQSKDNLERLSVIYAFVATRLLALRFMKEVDE
LTKESCEKVLGQKAWKLLWLKLESKTLPKEVPDMGWAYKNLAKLGGWKDTKRTGRASIKVLWEGWFKLQTILEGYELAMS
LDH

Sequences:

>Translated_243_residues
MQSRCLEEHAQKLYDYAQALPSVETKALTIPQKGGRKARNVKLDVKYGQVTLKAPANKKEHAGIPVYYVGCLEQGTSKDK
LAWHLLTSEPINNVDDAMRIIGYYERRWLIEDFHKVWKSEGTDVESLRLQSKDNLERLSVIYAFVATRLLALRFMKEVDE
LTKESCEKVLGQKAWKLLWLKLESKTLPKEVPDMGWAYKNLAKLGGWKDTKRTGRASIKVLWEGWFKLQTILEGYELAMS
LDH
>Mature_243_residues
MQSRCLEEHAQKLYDYAQALPSVETKALTIPQKGGRKARNVKLDVKYGQVTLKAPANKKEHAGIPVYYVGCLEQGTSKDK
LAWHLLTSEPINNVDDAMRIIGYYERRWLIEDFHKVWKSEGTDVESLRLQSKDNLERLSVIYAFVATRLLALRFMKEVDE
LTKESCEKVLGQKAWKLLWLKLESKTLPKEVPDMGWAYKNLAKLGGWKDTKRTGRASIKVLWEGWFKLQTILEGYELAMS
LDH

Specific function: Mediates transposition of transposon Tn5 by a 'cut and paste' mechanism. First, the monomeric transposase binds the 19 bp inverted DNA repeats flanking the transposon. Then, dimerization of the DNA-bound transposase creates a synaptic DNA complex. After n

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR002559
- InterPro:   IPR003201
- InterPro:   IPR014737
- InterPro:   IPR014736
- InterPro:   IPR014735 [H]

Pfam domain/function: PF01609 Transposase_11; PF02281 Transposase_Tn5 [H]

EC number: NA

Molecular weight: Translated: 28030; Mature: 28030

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSRCLEEHAQKLYDYAQALPSVETKALTIPQKGGRKARNVKLDVKYGQVTLKAPANKKE
CCCHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCCCCCCCEEEEEEECEEEEECCCCCCC
HAGIPVYYVGCLEQGTSKDKLAWHLLTSEPINNVDDAMRIIGYYERRWLIEDFHKVWKSE
CCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GTDVESLRLQSKDNLERLSVIYAFVATRLLALRFMKEVDELTKESCEKVLGQKAWKLLWL
CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
KLESKTLPKEVPDMGWAYKNLAKLGGWKDTKRTGRASIKVLWEGWFKLQTILEGYELAMS
EECCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
LDH
CCC
>Mature Secondary Structure
MQSRCLEEHAQKLYDYAQALPSVETKALTIPQKGGRKARNVKLDVKYGQVTLKAPANKKE
CCCHHHHHHHHHHHHHHHHCCCCCHHEEECCCCCCCCCCCEEEEEEECEEEEECCCCCCC
HAGIPVYYVGCLEQGTSKDKLAWHLLTSEPINNVDDAMRIIGYYERRWLIEDFHKVWKSE
CCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
GTDVESLRLQSKDNLERLSVIYAFVATRLLALRFMKEVDELTKESCEKVLGQKAWKLLWL
CCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
KLESKTLPKEVPDMGWAYKNLAKLGGWKDTKRTGRASIKVLWEGWFKLQTILEGYELAMS
EECCCCCCCCCCCCCHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC
LDH
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6260374; 6271452; 7867940; 6291786; 10884228; 12367522; 11896402 [H]