Click here to switch to the map view.

The map label for this gene is ywbA [H]

Identifier: 156976395

GI number: 156976395

Start: 421514

End: 423499

Strand: Direct

Name: ywbA [H]

Synonym: VIBHAR_05168

Alternate gene names: 156976395

Gene position: 421514-423499 (Clockwise)

Preceding gene: 156976394

Following gene: 156976397

Centisome position: 19.12

GC content: 44.56

Gene sequence:

>1986_bases
ATGTTGCTACCAGTCTCGTTAATTTCTGCATTCAGTACATTGCTGAGTAATTTACTGTTGATAGCTGGCTACGAGCAGAT
TGGTATCACTGTAGGTACAGCGAGTGCCATTATCTGGAAGCTATTTCCAATTTTGCTGTTGGTGTACTTCTCTCAGTTTC
TTTCCTCACTGTTGAAAGTCTCTCGTGTGAACGTCATAACGCCATCGTTGATGATTTACTTTATCGTCTGCAATGAATGG
GGCTTATTGCAAGATGGTACGGTCGTTCCAAGTAACTACCCATTGGCAATTCTTGTTCCGACCGTCGTCGCTTGGTCTGT
GCGTTTTATGCAAAACCGAAAATGGTTTATGCGCTCTGATTTGCCGAATGTTGTGGATCAATCCTACAACCTCATCGTGG
CGACGGTGGTGTTGCTCGTTGGTTATACGGTTTTGGGCTATGCGCTTGGGCAAGCGTTTTGTGCTGCGGATGTTGCGCAT
CTTCTACTGCCAAAACTGGATCCTAACTCACTGCTTGATGGTGTGCTCTACGAATTTGTGCGTAACCTATTTTGGTCGAT
TGGCATCAACGGCCACATCATTTTTGCGCCTTACAAAGCCGAGCTTTATGAAGTGACGCGTGTTGCGATAGAAAACCATG
AAGCGCTTGGAACACCACTGCCAATTTTAACTACTAATTTCTTTGATTTTTATGCAGGGATGGGGGGCGCAGGGAACACC
ATTTCACTGGTGCTTTGTATGCTTTTTCTGACCAAAAATCGCAGTTATAAAGCGCTTGCGGTAGCGGCATTGGTTTTGAG
CTTGTTCAATATTAACGAGCCAATCATTTATGGCTTACCCATCATGTTCAATCCCGTCATGATTGTGCCGTTTCTCATTG
CTCCTATTGTAGGATTAGTCATTGCTTACGTTGCGACAGCGATGGGGCTGGTGGCACCGATAACAGAAATCATGAGCTGG
ATGACACCGCCATTAGCCAGTGGTTACATCGGCACAGGCTACACGTGGACGGGCGTGATTTTGCAACTGATCATCATCTT
GGTTGGTGTGGTAATTTACTACCCATTCTTTAAGCAAATGGACAAAATTGGTAATGCGGATACGCTATTTGCAAAGTCAG
TTTCTGATGATTTCTTCAATTATGAAGGATTAGATAATGGCAAAGTGGCGGGGGCATTTTTCCCTGAAATCACGAATAAG
TTTGTGGCGCAAAAACGCATCAGTGACTTGAAAAAGCATGGCGAGTTTGTGTTGTTCTATCAACCACAGGTTAATGCTCG
TACGGGTGAGATTCGTTCGCTTGAAGTACTGATTCGTCATCGCTCTGAAACAGGAGAGATCACACCACCAACGTTTCTTG
AGGACTTTGTAAAAGTCGGCTTAATGAGTGAGTTGGATTTATGGGTGGTCGAAACGACATTGCGTGAAGCAGCGCCTTTG
GCGAATCGACCAAACTTCAAGGTTTCAATTAACCTATCGCCAGAAACTTGCTTGGTACCAGACTTCACTGAAAAGGTACT
GACGATGATTAATGAAAGTGCTCTCTCTTGCTCTCAAGTGGAGTTTGAAATTACCGAAGACATGCTGATTCAGGACGAGC
ATCGTACCCACTTTGTGTTGAGCGCACTGCGAGCTGCGGGGGTGAAGATTGCGTTGGATGACTTCGGTTCTGGTTATTCG
TCTATTGGTTACTTGTCAAAATACGATTTCGATAAAGTGAAAATAGACCGTTCGTTAGTACTTAACCTCAACAACAAAAA
CGGTCGCGAACTGTTTAGGTTAACCGCGAAGCTGGTAAAAATTACCGGAGCCGTCACCGTTGCCGAAGGTATTGAAACAG
AGAGCGAGTTAGAGTTTATGGCAGAATTAGGTATTGATTTGATTCAAGGCTTTTACTTCTACCGCCCAATGCCGTTTGAC
GATGTTGTAAAGCTTGAATACAGCGAGCGAGAAGAGCGTTCAGATTACGATCACTTTGCATGCTAA

Upstream 100 bases:

>100_bases
GATGGATTTACTTAGCCAAATGAACAATCGATATATCAATCGACTTTTTACTTTAATATCTTCCAACTTATACATTAACG
GTTTATGTAACGTCCTCGTG

Downstream 100 bases:

>100_bases
GCAGTAAGTTAACAGCACCAAAAAGGGAAGCGAAATGCTTCCCTTTTCTTTAGGTTCAAATAAGACATCTGTGTGCCCCA
ATCTCAAATTGGGTCATCTA

Product: cellobiose-specific phosphotransferase system enzyme IIC

Products: NA

Alternate protein names: Putative PTS system EIIC component [H]

Number of amino acids: Translated: 661; Mature: 661

Protein sequence:

>661_residues
MLLPVSLISAFSTLLSNLLLIAGYEQIGITVGTASAIIWKLFPILLLVYFSQFLSSLLKVSRVNVITPSLMIYFIVCNEW
GLLQDGTVVPSNYPLAILVPTVVAWSVRFMQNRKWFMRSDLPNVVDQSYNLIVATVVLLVGYTVLGYALGQAFCAADVAH
LLLPKLDPNSLLDGVLYEFVRNLFWSIGINGHIIFAPYKAELYEVTRVAIENHEALGTPLPILTTNFFDFYAGMGGAGNT
ISLVLCMLFLTKNRSYKALAVAALVLSLFNINEPIIYGLPIMFNPVMIVPFLIAPIVGLVIAYVATAMGLVAPITEIMSW
MTPPLASGYIGTGYTWTGVILQLIIILVGVVIYYPFFKQMDKIGNADTLFAKSVSDDFFNYEGLDNGKVAGAFFPEITNK
FVAQKRISDLKKHGEFVLFYQPQVNARTGEIRSLEVLIRHRSETGEITPPTFLEDFVKVGLMSELDLWVVETTLREAAPL
ANRPNFKVSINLSPETCLVPDFTEKVLTMINESALSCSQVEFEITEDMLIQDEHRTHFVLSALRAAGVKIALDDFGSGYS
SIGYLSKYDFDKVKIDRSLVLNLNNKNGRELFRLTAKLVKITGAVTVAEGIETESELEFMAELGIDLIQGFYFYRPMPFD
DVVKLEYSEREERSDYDHFAC

Sequences:

>Translated_661_residues
MLLPVSLISAFSTLLSNLLLIAGYEQIGITVGTASAIIWKLFPILLLVYFSQFLSSLLKVSRVNVITPSLMIYFIVCNEW
GLLQDGTVVPSNYPLAILVPTVVAWSVRFMQNRKWFMRSDLPNVVDQSYNLIVATVVLLVGYTVLGYALGQAFCAADVAH
LLLPKLDPNSLLDGVLYEFVRNLFWSIGINGHIIFAPYKAELYEVTRVAIENHEALGTPLPILTTNFFDFYAGMGGAGNT
ISLVLCMLFLTKNRSYKALAVAALVLSLFNINEPIIYGLPIMFNPVMIVPFLIAPIVGLVIAYVATAMGLVAPITEIMSW
MTPPLASGYIGTGYTWTGVILQLIIILVGVVIYYPFFKQMDKIGNADTLFAKSVSDDFFNYEGLDNGKVAGAFFPEITNK
FVAQKRISDLKKHGEFVLFYQPQVNARTGEIRSLEVLIRHRSETGEITPPTFLEDFVKVGLMSELDLWVVETTLREAAPL
ANRPNFKVSINLSPETCLVPDFTEKVLTMINESALSCSQVEFEITEDMLIQDEHRTHFVLSALRAAGVKIALDDFGSGYS
SIGYLSKYDFDKVKIDRSLVLNLNNKNGRELFRLTAKLVKITGAVTVAEGIETESELEFMAELGIDLIQGFYFYRPMPFD
DVVKLEYSEREERSDYDHFAC
>Mature_661_residues
MLLPVSLISAFSTLLSNLLLIAGYEQIGITVGTASAIIWKLFPILLLVYFSQFLSSLLKVSRVNVITPSLMIYFIVCNEW
GLLQDGTVVPSNYPLAILVPTVVAWSVRFMQNRKWFMRSDLPNVVDQSYNLIVATVVLLVGYTVLGYALGQAFCAADVAH
LLLPKLDPNSLLDGVLYEFVRNLFWSIGINGHIIFAPYKAELYEVTRVAIENHEALGTPLPILTTNFFDFYAGMGGAGNT
ISLVLCMLFLTKNRSYKALAVAALVLSLFNINEPIIYGLPIMFNPVMIVPFLIAPIVGLVIAYVATAMGLVAPITEIMSW
MTPPLASGYIGTGYTWTGVILQLIIILVGVVIYYPFFKQMDKIGNADTLFAKSVSDDFFNYEGLDNGKVAGAFFPEITNK
FVAQKRISDLKKHGEFVLFYQPQVNARTGEIRSLEVLIRHRSETGEITPPTFLEDFVKVGLMSELDLWVVETTLREAAPL
ANRPNFKVSINLSPETCLVPDFTEKVLTMINESALSCSQVEFEITEDMLIQDEHRTHFVLSALRAAGVKIALDDFGSGYS
SIGYLSKYDFDKVKIDRSLVLNLNNKNGRELFRLTAKLVKITGAVTVAEGIETESELEFMAELGIDLIQGFYFYRPMPFD
DVVKLEYSEREERSDYDHFAC

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-3 domain [H]

Homologues:

Organism=Escherichia coli, GI1788849, Length=265, Percent_Identity=30.9433962264151, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI226510982, Length=308, Percent_Identity=28.8961038961039, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI87081845, Length=242, Percent_Identity=31.8181818181818, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=29.957805907173, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1790496, Length=253, Percent_Identity=31.6205533596838, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI1787541, Length=230, Percent_Identity=30, Blast_Score=115, Evalue=9e-27,
Organism=Escherichia coli, GI87081743, Length=265, Percent_Identity=30.188679245283, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1787055, Length=231, Percent_Identity=29.8701298701299, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87081921, Length=267, Percent_Identity=27.7153558052434, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI87082096, Length=248, Percent_Identity=27.4193548387097, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1788032, Length=287, Percent_Identity=27.5261324041812, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87081980, Length=242, Percent_Identity=30.5785123966942, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1786507, Length=234, Percent_Identity=28.6324786324786, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787410, Length=152, Percent_Identity=28.9473684210526, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003352
- InterPro:   IPR004796
- InterPro:   IPR004501 [H]

Pfam domain/function: PF02378 PTS_EIIC [H]

EC number: NA

Molecular weight: Translated: 73708; Mature: 73708

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS51105 PTS_EIIC_TYPE_3 ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLPVSLISAFSTLLSNLLLIAGYEQIGITVGTASAIIWKLFPILLLVYFSQFLSSLLKV
CCCHHHHHHHHHHHHHHHHHHCCHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRVNVITPSLMIYFIVCNEWGLLQDGTVVPSNYPLAILVPTVVAWSVRFMQNRKWFMRSD
HHHHEECHHHEEEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCC
LPNVVDQSYNLIVATVVLLVGYTVLGYALGQAFCAADVAHLLLPKLDPNSLLDGVLYEFV
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
RNLFWSIGINGHIIFAPYKAELYEVTRVAIENHEALGTPLPILTTNFFDFYAGMGGAGNT
HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCH
ISLVLCMLFLTKNRSYKALAVAALVLSLFNINEPIIYGLPIMFNPVMIVPFLIAPIVGLV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH
IAYVATAMGLVAPITEIMSWMTPPLASGYIGTGYTWTGVILQLIIILVGVVIYYPFFKQM
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DKIGNADTLFAKSVSDDFFNYEGLDNGKVAGAFFPEITNKFVAQKRISDLKKHGEFVLFY
HHCCCCHHHHHHHHCCHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
QPQVNARTGEIRSLEVLIRHRSETGEITPPTFLEDFVKVGLMSELDLWVVETTLREAAPL
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC
ANRPNFKVSINLSPETCLVPDFTEKVLTMINESALSCSQVEFEITEDMLIQDEHRTHFVL
CCCCCEEEEEEECCCCEECCCHHHHHHHHHHHHCCCHHHEEEEECHHHHHCCCCHHHHHH
SALRAAGVKIALDDFGSGYSSIGYLSKYDFDKVKIDRSLVLNLNNKNGRELFRLTAKLVK
HHHHHCCCEEEEECCCCCHHHCCCCHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHH
ITGAVTVAEGIETESELEFMAELGIDLIQGFYFYRPMPFDDVVKLEYSEREERSDYDHFA
HHHHEEEHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECHHHHHCCCCCCCC
C
C
>Mature Secondary Structure
MLLPVSLISAFSTLLSNLLLIAGYEQIGITVGTASAIIWKLFPILLLVYFSQFLSSLLKV
CCCHHHHHHHHHHHHHHHHHHCCHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRVNVITPSLMIYFIVCNEWGLLQDGTVVPSNYPLAILVPTVVAWSVRFMQNRKWFMRSD
HHHHEECHHHEEEEEEECCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCC
LPNVVDQSYNLIVATVVLLVGYTVLGYALGQAFCAADVAHLLLPKLDPNSLLDGVLYEFV
CCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
RNLFWSIGINGHIIFAPYKAELYEVTRVAIENHEALGTPLPILTTNFFDFYAGMGGAGNT
HHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCH
ISLVLCMLFLTKNRSYKALAVAALVLSLFNINEPIIYGLPIMFNPVMIVPFLIAPIVGLV
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHH
IAYVATAMGLVAPITEIMSWMTPPLASGYIGTGYTWTGVILQLIIILVGVVIYYPFFKQM
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DKIGNADTLFAKSVSDDFFNYEGLDNGKVAGAFFPEITNKFVAQKRISDLKKHGEFVLFY
HHCCCCHHHHHHHHCCHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEE
QPQVNARTGEIRSLEVLIRHRSETGEITPPTFLEDFVKVGLMSELDLWVVETTLREAAPL
CCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCC
ANRPNFKVSINLSPETCLVPDFTEKVLTMINESALSCSQVEFEITEDMLIQDEHRTHFVL
CCCCCEEEEEEECCCCEECCCHHHHHHHHHHHHCCCHHHEEEEECHHHHHCCCCHHHHHH
SALRAAGVKIALDDFGSGYSSIGYLSKYDFDKVKIDRSLVLNLNNKNGRELFRLTAKLVK
HHHHHCCCEEEEECCCCCHHHCCCCHHCCCCCEEECCEEEEEECCCCHHHHHHHHHHHHH
ITGAVTVAEGIETESELEFMAELGIDLIQGFYFYRPMPFDDVVKLEYSEREERSDYDHFA
HHHHEEEHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEECHHHHHCCCCCCCC
C
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]