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The map label for this gene is tcpI [H]

Identifier: 156976363

GI number: 156976363

Start: 374246

End: 375922

Strand: Reverse

Name: tcpI [H]

Synonym: VIBHAR_05136

Alternate gene names: 156976363

Gene position: 375922-374246 (Counterclockwise)

Preceding gene: 156976369

Following gene: 156976351

Centisome position: 17.06

GC content: 46.15

Gene sequence:

>1677_bases
ATGATAATAGTTATAATCTTTAGAGGGTCAATCATGCGTCAATTACTTAGCACGCTGTCTATTAAGTCACAGGTTTTCGT
GCCCGTGCTTTTCACTGTCATACTGCTCATCGTTGGTTTGAGCATAGGCATAGGAAAGTTAGAGAAAGCATTCGACAAAG
TGACGGTTTCTACCAATAAACTTATCGTGCATAAAGAAGAGCTGGGCTCTATCGTAGACAACACCTACGCGATGCGCATT
AAGGCGATTTATAGTCTATTCAGGGCGGAAGATGTCAAAACACTGAACCAAGAACTGCAACAACGCCAAACAACAAACCG
AGAGTTTCTTAATTCTATCGATAAAATTGAAGGTATTCAGGCTGAAGTAAACGCCATGCGCGACGCCATGAATCACTACG
TCGATTTTACTCGTGTTACCATGACTCCCCTTCTCAATACCAAACATACTTCTGAGTACACCACGTCAGACTTTGAACGA
GAGTACGAGTCTGCAATGGGCCAATACCGCCTTGCGGGTGAAGCCATGATAAAAGCGATCGACAACTTGTCTAAAAAGCT
CAACCAAATCGTTACCGATGAAGTCGAGGAAAATGGCATTCTTCACTCTGATACCCTGACCTATAGCACGGTATCTCTAG
TGGTTATTCTCTCTATTGCCTCTTTGATCAGTTGGCTGCTAGCGAGCTACATTGTTGCTCCAATCCGCAACCTACAACAA
ACCATGCAAGAAGTAGCAAAAGGTAACTTGTTGGTCGAAGCAGACGAAGTGGGCAAAAACGAAGTCTCACAACTGGCGCA
TGACGTAAACCAAACCATCCACCAACTTCGTGGTACGGTCGATTCTCTGGTTCGAATCAGTGAAGATGTCGCTTCGGCAT
CGACAGAGCTGGCAACCGTGATGACGCAAAGCAGTGCGAACTCGGATCAAGAGAAGCAAGAAGTTGAACAAGTCGCGTCT
GCGATTAACCAACTTGAATCCACAGCGGCAGAAGTTTCAAGTAATGCACAACAAGCAGATAGTGCGTCGAATGAAGCAAG
CAAACTGACGTCTCAAAGCTTGAGTATGTTTGAAGAAAGCACACGTGCGAGCGCAAAAATGGCTGACCAGCTGAATGAAG
CAGCGCATGTAGTGACGTCGCTTAAAGATCAGTCCGAGCAGATTGGAAAAGTGATCGAAGTTATTGAGAGCATCTCTGAA
CAAACCAATCTACTTGCATTGAACGCGGCAATTGAAGCGGCACGAGCAGGTGAAAGTGGTCGAGGTTTTGCCGTGGTAGC
TGACGAAGTGCGTATGCTGGCGGCGAGAACTCAAGAGTCGACCAAAGAGATCCAAACCATCATTGAAGAGCTACAACAGC
AGTCTGGTCACGCAAACGAAAGCATGCATTCGAGCCTAGCCATGCTTGAAGACAACCAATCGCTTGCCGCAGAAGTGAGT
CGTTCACTGAGTGACATCAACAGCGCAATTTCAGATCTGAATGCAATCAACACCCAAGTTGCGACCGCTTCTGAAGAACA
AAAGCAAGTCACGTCTGACATAAACAATAACCTAAGCACCATCTATGAATTGGTGAGCCAGAACGTCACTGGCATCACTC
AATCAGCCGCGGCGGCGCAAGAGCTGTCTGGCTTAGCAGAAAACCAAAAGCACCAACTTAAGCAGTTCCAAGTTTAA

Upstream 100 bases:

>100_bases
CAACCACATCACTTTTAATATATTTCATAACAAACAATCATCGTTAAATTATTGATATATCAAGCTTACTAATTAGAATC
GACTGGCTTTATTTACAAAA

Downstream 100 bases:

>100_bases
TCATTCTGCTCAACCCGATACGTTCCAAAGGTTAGAAATGAAGAAAGCTCCGCACTGGCGGAGCTTTTTAATATCTGGAT
TAGAGAAAATCCAACGGGGT

Product: torS; sensor protein TorS

Products: NA

Alternate protein names: TCP pilus biosynthesis protein tcpI [H]

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MIIVIIFRGSIMRQLLSTLSIKSQVFVPVLFTVILLIVGLSIGIGKLEKAFDKVTVSTNKLIVHKEELGSIVDNTYAMRI
KAIYSLFRAEDVKTLNQELQQRQTTNREFLNSIDKIEGIQAEVNAMRDAMNHYVDFTRVTMTPLLNTKHTSEYTTSDFER
EYESAMGQYRLAGEAMIKAIDNLSKKLNQIVTDEVEENGILHSDTLTYSTVSLVVILSIASLISWLLASYIVAPIRNLQQ
TMQEVAKGNLLVEADEVGKNEVSQLAHDVNQTIHQLRGTVDSLVRISEDVASASTELATVMTQSSANSDQEKQEVEQVAS
AINQLESTAAEVSSNAQQADSASNEASKLTSQSLSMFEESTRASAKMADQLNEAAHVVTSLKDQSEQIGKVIEVIESISE
QTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQESTKEIQTIIEELQQQSGHANESMHSSLAMLEDNQSLAAEVS
RSLSDINSAISDLNAINTQVATASEEQKQVTSDINNNLSTIYELVSQNVTGITQSAAAAQELSGLAENQKHQLKQFQV

Sequences:

>Translated_558_residues
MIIVIIFRGSIMRQLLSTLSIKSQVFVPVLFTVILLIVGLSIGIGKLEKAFDKVTVSTNKLIVHKEELGSIVDNTYAMRI
KAIYSLFRAEDVKTLNQELQQRQTTNREFLNSIDKIEGIQAEVNAMRDAMNHYVDFTRVTMTPLLNTKHTSEYTTSDFER
EYESAMGQYRLAGEAMIKAIDNLSKKLNQIVTDEVEENGILHSDTLTYSTVSLVVILSIASLISWLLASYIVAPIRNLQQ
TMQEVAKGNLLVEADEVGKNEVSQLAHDVNQTIHQLRGTVDSLVRISEDVASASTELATVMTQSSANSDQEKQEVEQVAS
AINQLESTAAEVSSNAQQADSASNEASKLTSQSLSMFEESTRASAKMADQLNEAAHVVTSLKDQSEQIGKVIEVIESISE
QTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQESTKEIQTIIEELQQQSGHANESMHSSLAMLEDNQSLAAEVS
RSLSDINSAISDLNAINTQVATASEEQKQVTSDINNNLSTIYELVSQNVTGITQSAAAAQELSGLAENQKHQLKQFQV
>Mature_558_residues
MIIVIIFRGSIMRQLLSTLSIKSQVFVPVLFTVILLIVGLSIGIGKLEKAFDKVTVSTNKLIVHKEELGSIVDNTYAMRI
KAIYSLFRAEDVKTLNQELQQRQTTNREFLNSIDKIEGIQAEVNAMRDAMNHYVDFTRVTMTPLLNTKHTSEYTTSDFER
EYESAMGQYRLAGEAMIKAIDNLSKKLNQIVTDEVEENGILHSDTLTYSTVSLVVILSIASLISWLLASYIVAPIRNLQQ
TMQEVAKGNLLVEADEVGKNEVSQLAHDVNQTIHQLRGTVDSLVRISEDVASASTELATVMTQSSANSDQEKQEVEQVAS
AINQLESTAAEVSSNAQQADSASNEASKLTSQSLSMFEESTRASAKMADQLNEAAHVVTSLKDQSEQIGKVIEVIESISE
QTNLLALNAAIEAARAGESGRGFAVVADEVRMLAARTQESTKEIQTIIEELQQQSGHANESMHSSLAMLEDNQSLAAEVS
RSLSDINSAISDLNAINTQVATASEEQKQVTSDINNNLSTIYELVSQNVTGITQSAAAAQELSGLAENQKHQLKQFQV

Specific function: May function as an environmental regulator of TCP biogenesis. Negatively regulates the synthesis of the major pilin subunit of TCP (tcpA) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788194, Length=351, Percent_Identity=29.0598290598291, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1787690, Length=336, Percent_Identity=29.1666666666667, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI2367378, Length=318, Percent_Identity=29.874213836478, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1788195, Length=279, Percent_Identity=30.8243727598566, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1789453, Length=345, Percent_Identity=29.8550724637681, Blast_Score=109, Evalue=4e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004089 [H]

Pfam domain/function: PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 61032; Mature: 61032

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2 ; PS50192 T_SNARE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIVIIFRGSIMRQLLSTLSIKSQVFVPVLFTVILLIVGLSIGIGKLEKAFDKVTVSTNK
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCE
LIVHKEELGSIVDNTYAMRIKAIYSLFRAEDVKTLNQELQQRQTTNREFLNSIDKIEGIQ
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHH
AEVNAMRDAMNHYVDFTRVTMTPLLNTKHTSEYTTSDFEREYESAMGQYRLAGEAMIKAI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DNLSKKLNQIVTDEVEENGILHSDTLTYSTVSLVVILSIASLISWLLASYIVAPIRNLQQ
HHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMQEVAKGNLLVEADEVGKNEVSQLAHDVNQTIHQLRGTVDSLVRISEDVASASTELATV
HHHHHHCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTQSSANSDQEKQEVEQVASAINQLESTAAEVSSNAQQADSASNEASKLTSQSLSMFEES
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHH
TRASAKMADQLNEAAHVVTSLKDQSEQIGKVIEVIESISEQTNLLALNAAIEAARAGESG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RGFAVVADEVRMLAARTQESTKEIQTIIEELQQQSGHANESMHSSLAMLEDNQSLAAEVS
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
RSLSDINSAISDLNAINTQVATASEEQKQVTSDINNNLSTIYELVSQNVTGITQSAAAAQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH
ELSGLAENQKHQLKQFQV
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIIVIIFRGSIMRQLLSTLSIKSQVFVPVLFTVILLIVGLSIGIGKLEKAFDKVTVSTNK
CEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCE
LIVHKEELGSIVDNTYAMRIKAIYSLFRAEDVKTLNQELQQRQTTNREFLNSIDKIEGIQ
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHH
AEVNAMRDAMNHYVDFTRVTMTPLLNTKHTSEYTTSDFEREYESAMGQYRLAGEAMIKAI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DNLSKKLNQIVTDEVEENGILHSDTLTYSTVSLVVILSIASLISWLLASYIVAPIRNLQQ
HHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TMQEVAKGNLLVEADEVGKNEVSQLAHDVNQTIHQLRGTVDSLVRISEDVASASTELATV
HHHHHHCCCEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MTQSSANSDQEKQEVEQVASAINQLESTAAEVSSNAQQADSASNEASKLTSQSLSMFEES
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHH
TRASAKMADQLNEAAHVVTSLKDQSEQIGKVIEVIESISEQTNLLALNAAIEAARAGESG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RGFAVVADEVRMLAARTQESTKEIQTIIEELQQQSGHANESMHSSLAMLEDNQSLAAEVS
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
RSLSDINSAISDLNAINTQVATASEEQKQVTSDINNNLSTIYELVSQNVTGITQSAAAAQ
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHH
ELSGLAENQKHQLKQFQV
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8005659 [H]