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The map label for this gene is ybaF [H]

Identifier: 156976334

GI number: 156976334

Start: 344150

End: 344989

Strand: Reverse

Name: ybaF [H]

Synonym: VIBHAR_05107

Alternate gene names: 156976334

Gene position: 344989-344150 (Counterclockwise)

Preceding gene: 156976335

Following gene: 156976331

Centisome position: 15.65

GC content: 44.4

Gene sequence:

>840_bases
ATGAAAGACAACAAGATGAAGTTTGGTATCAACTACATCGATACCCAATCGCCACTGCACAAACTCAATGGCATCACCAA
GTTTTTGATGTTCATTGCATGGGTAACGGTGGTACTTACGACCTTTGATTTGCGCATCATTGCTCTACTGATCGTTGTAG
GTCTTGGTTTGTTAAAAATGACCAAGATACCTTTCCATGTGTACAAGCCTTTACTGATCGGTACAGGCAGCGTTTTGTTG
ATTAATGCTCTGTTTATGTTCGCATTAGCACCGCAACAAGGCGGTGAATACATGGGCTCAACAACAGTATTGTTGTCGTT
ACCGGGTAATTACTCACTCACCCAAGAGACCTTGTTCTATCTGGTCACCGTGACACTGAAATACTTCAGTATGTTCCCAA
TTGCCTTGGTTTTTGTGTTTACTACGCACCCTACTGAGTTTGCAGCAAGTTTGAACCGCATGGGTGTGCCTTACAAAATC
GCCTATGCAGTAAGTTTGACCTTGCGTTACTTGCCAGAAGTGAAGAAAGACTTCGTCAATATCATGCATGCTCAACAAGC
TCGCGGTGTTGAACTGAGTAAGAAAGCGCCGTTGTTTACGCGAATGAAAAACGTTTCTAAGATCTTAGGCCCTTTGATTT
TCTCTAGCCTAGATCGCGCTGACCAAATCTCTAACGCGATGACATTGCGTGGTTTTGGCCGTCATTCTTCTCGTACTTGG
TACAGCCTAAAGCCGCTGACCAAAGCCGATATGGTGTGTATGGCAGGCATCGTCGTGATTGTTGCCACAGCGATTAGCAA
ACGCGTTATAGACACTCAGCTGTTTTGGTATCCGTTCTAA

Upstream 100 bases:

>100_bases
AAAAAGCACGTCGAGAGCGTGAAAACAAAGCCGATTTACAAACTTCAGAAGCTCAAGATTCACAAAATAATGATGCTAAA
AACATTAAGAAAGTAGTGGC

Downstream 100 bases:

>100_bases
GCGAACCAGTCTTACAACAAACCAGTCTCACGTGGAAAACCGAATATAAAAATGGGATGCCTCTGCATCCCATTTTTATA
ACCAGCTTTCGCGCTAAGCT

Product: ABC-type cobalt transport system permease component CbiQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKDNKMKFGINYIDTQSPLHKLNGITKFLMFIAWVTVVLTTFDLRIIALLIVVGLGLLKMTKIPFHVYKPLLIGTGSVLL
INALFMFALAPQQGGEYMGSTTVLLSLPGNYSLTQETLFYLVTVTLKYFSMFPIALVFVFTTHPTEFAASLNRMGVPYKI
AYAVSLTLRYLPEVKKDFVNIMHAQQARGVELSKKAPLFTRMKNVSKILGPLIFSSLDRADQISNAMTLRGFGRHSSRTW
YSLKPLTKADMVCMAGIVVIVATAISKRVIDTQLFWYPF

Sequences:

>Translated_279_residues
MKDNKMKFGINYIDTQSPLHKLNGITKFLMFIAWVTVVLTTFDLRIIALLIVVGLGLLKMTKIPFHVYKPLLIGTGSVLL
INALFMFALAPQQGGEYMGSTTVLLSLPGNYSLTQETLFYLVTVTLKYFSMFPIALVFVFTTHPTEFAASLNRMGVPYKI
AYAVSLTLRYLPEVKKDFVNIMHAQQARGVELSKKAPLFTRMKNVSKILGPLIFSSLDRADQISNAMTLRGFGRHSSRTW
YSLKPLTKADMVCMAGIVVIVATAISKRVIDTQLFWYPF
>Mature_279_residues
MKDNKMKFGINYIDTQSPLHKLNGITKFLMFIAWVTVVLTTFDLRIIALLIVVGLGLLKMTKIPFHVYKPLLIGTGSVLL
INALFMFALAPQQGGEYMGSTTVLLSLPGNYSLTQETLFYLVTVTLKYFSMFPIALVFVFTTHPTEFAASLNRMGVPYKI
AYAVSLTLRYLPEVKKDFVNIMHAQQARGVELSKKAPLFTRMKNVSKILGPLIFSSLDRADQISNAMTLRGFGRHSSRTW
YSLKPLTKADMVCMAGIVVIVATAISKRVIDTQLFWYPF

Specific function: Unknown

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 31340; Mature: 31340

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECC
>Mature Secondary Structure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EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]