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The map label for this gene is mcpB [H]

Identifier: 156976014

GI number: 156976014

Start: 47162

End: 49048

Strand: Reverse

Name: mcpB [H]

Synonym: VIBHAR_04784

Alternate gene names: 156976014

Gene position: 49048-47162 (Counterclockwise)

Preceding gene: 156976016

Following gene: 156976012

Centisome position: 2.23

GC content: 49.23

Gene sequence:

>1887_bases
ATGCTTAAAAATCTATCTCTAAAGAACAAACTGGCGATCTCCGCCAGTGCTGCCATCATCCTCGGGGGAGTGTTGGTAGA
GGGGCTGTCTTTCCGTGATGCTTTGCAAAGACTTGATGTTGAAGTCGCTCAGTGCCTAGAAAGTACTAGCGCATCTTACA
ACCAATACGTAAGCGACTGGCTACTATCGAAAGAACGTGCACTCACATCGCTTTCTCAAGACGCTGAAAAATCAGCGATT
GTGACGCACCTTAAGCAGGTTCGCGATTCTGCCGCGTTTGATAACGTCTTCCTTGCGTATCCAGACGGTTCTCAAGACAA
CGCGAATGGTGTTGTATTGCCACCGGGTAACGACGACCCTCGCCAATGGGGTTGGTACACCAACGCAATCGCAAACCCTT
CGAAAGTCTTTATGGACAATCCAACCGTTGCTGCGGCAACAGGGGCAAACGTCGTGTCTTTGGGTAAAGCACTCCAGCTT
CACGGTCAAACCAACGTGCTAGGTGCAGACGTAGAAATCGGTGACATCCTAAATAGCCTGAACCAAGTGATTCTGCCGGG
TGAAGGTTATATGTTCATCGCCAACGATCAGGGCAATATCTTTACCCACAACAACAGCAAGCTGCTTAACCAGCCCGTGA
GCAAGCTGGGCTTAAATAACAGCGACATCGTCGCGGCTGCCAACTCTGGACAAGAGCGCACCATCTCCATCAACGGTAAA
GACTTCGTGGTTTACGCGAAAGCCATCGATGGCACCAAATTGACCACAGTAACGGTTCTGGATAATGACTCTTTGGTCGC
CCCACTTTACGATGCCGTTTGGGGACAAATCATCGCAACTACGATTGTGGTGATCATCTGTGTGGCCTTGTTTAACCTAC
TGTGTAACATCCTTTTCCGTCCGCTTTACAACGTGTCAAATGCCCTATCGCAAATCGCCAATGGTAGCGGTGATTTAACT
CAGCGCATCAAAGTTGAGAACCGTGACGAAGTGGGTGAATTGGCAGAAAACTTCAACCAGTTCGTTGCCAGTCTTCAGCA
ACTTATCGGCCATATTCGTCATCAAGCGGAAAACTTAAACGATCAATCAGAGCTGAGCACGAAACGTGCAAACCAATCGG
TTGAAGAGCTTAACCACCAGCAACAAGAAATCACGCTTGTGGCAACGGCAGTAACGGAAATGGCTTCTGCGACGCAAGAG
ATCGCTTCTCACGCTGAACAAACAGCTAAAGTGGCGCAGGACTCTTCCATAAGCACACAAAACGGCCACTCACTGGTAGT
GAACACCAAAGACTCGATCAACAACCTGTCTTCGGAAGTGAACCAAGCCAGCGGTGTTATCAGTGAACTGAACCAGCATG
CTCAAGACATCAATACCGTGCTATCGACCATTCGTGACATTGCTGAGCAAACCAACCTACTTGCATTGAACGCTGCGATT
GAAGCAGCACGTGCAGGCGAACAAGGCCGCGGTTTTGCTGTGGTTGCGGATGAAGTTCGTGTTCTATCGCAACGTACTCA
TACTTCGACAGAAGAAATCAAGTCCACCATCGAGACACTGCAATGCACAACTCAGCGTGCCGTTACTTTGATGGAACGCA
GCTCTGAACTGGCAATAGGTTCGGTAGAAGATGCCGACCGTGCTTCCCAAGCGCTGGATGAAATCAACTCGGCAGTAGCA
ATGATCAGCGATATGGCGACCCAAATCGCCACCGCCGCAGAAGAACAAACCCACGTGACCAATGAAATCACCCAGAACGT
TACTTCCATCAAAGACGTCACGGATCACTTGGTTATCGGGGCAGAGGAATCGATGAATCAGTCGTCTGAGCTGAAATCTC
AAGCAGAAGATCTCAATTCGAAAGTGGCAACGTTCAAACTGGCGTAA

Upstream 100 bases:

>100_bases
CTCAAATACGCGACATAGATCTGAATTTATTTTGACCACTAAAATATAATGTCGCCGCTAAATACCTATTTTTATAAATA
TAAGAGCCAACTATAACTTT

Downstream 100 bases:

>100_bases
TTCTCGCTTCAAACCTCAATTCCAAACCCCGCCACGTTGCGGGGTTTGTTGTTTCTCCCTTGTGTAAATTGGGCTTAAAT
TGACCCGAAAGCCCCAAAAA

Product: histidine kinase

Products: NA

Alternate protein names: H3 [H]

Number of amino acids: Translated: 628; Mature: 628

Protein sequence:

>628_residues
MLKNLSLKNKLAISASAAIILGGVLVEGLSFRDALQRLDVEVAQCLESTSASYNQYVSDWLLSKERALTSLSQDAEKSAI
VTHLKQVRDSAAFDNVFLAYPDGSQDNANGVVLPPGNDDPRQWGWYTNAIANPSKVFMDNPTVAAATGANVVSLGKALQL
HGQTNVLGADVEIGDILNSLNQVILPGEGYMFIANDQGNIFTHNNSKLLNQPVSKLGLNNSDIVAAANSGQERTISINGK
DFVVYAKAIDGTKLTTVTVLDNDSLVAPLYDAVWGQIIATTIVVIICVALFNLLCNILFRPLYNVSNALSQIANGSGDLT
QRIKVENRDEVGELAENFNQFVASLQQLIGHIRHQAENLNDQSELSTKRANQSVEELNHQQQEITLVATAVTEMASATQE
IASHAEQTAKVAQDSSISTQNGHSLVVNTKDSINNLSSEVNQASGVISELNQHAQDINTVLSTIRDIAEQTNLLALNAAI
EAARAGEQGRGFAVVADEVRVLSQRTHTSTEEIKSTIETLQCTTQRAVTLMERSSELAIGSVEDADRASQALDEINSAVA
MISDMATQIATAAEEQTHVTNEITQNVTSIKDVTDHLVIGAEESMNQSSELKSQAEDLNSKVATFKLA

Sequences:

>Translated_628_residues
MLKNLSLKNKLAISASAAIILGGVLVEGLSFRDALQRLDVEVAQCLESTSASYNQYVSDWLLSKERALTSLSQDAEKSAI
VTHLKQVRDSAAFDNVFLAYPDGSQDNANGVVLPPGNDDPRQWGWYTNAIANPSKVFMDNPTVAAATGANVVSLGKALQL
HGQTNVLGADVEIGDILNSLNQVILPGEGYMFIANDQGNIFTHNNSKLLNQPVSKLGLNNSDIVAAANSGQERTISINGK
DFVVYAKAIDGTKLTTVTVLDNDSLVAPLYDAVWGQIIATTIVVIICVALFNLLCNILFRPLYNVSNALSQIANGSGDLT
QRIKVENRDEVGELAENFNQFVASLQQLIGHIRHQAENLNDQSELSTKRANQSVEELNHQQQEITLVATAVTEMASATQE
IASHAEQTAKVAQDSSISTQNGHSLVVNTKDSINNLSSEVNQASGVISELNQHAQDINTVLSTIRDIAEQTNLLALNAAI
EAARAGEQGRGFAVVADEVRVLSQRTHTSTEEIKSTIETLQCTTQRAVTLMERSSELAIGSVEDADRASQALDEINSAVA
MISDMATQIATAAEEQTHVTNEITQNVTSIKDVTDHLVIGAEESMNQSSELKSQAEDLNSKVATFKLA
>Mature_628_residues
MLKNLSLKNKLAISASAAIILGGVLVEGLSFRDALQRLDVEVAQCLESTSASYNQYVSDWLLSKERALTSLSQDAEKSAI
VTHLKQVRDSAAFDNVFLAYPDGSQDNANGVVLPPGNDDPRQWGWYTNAIANPSKVFMDNPTVAAATGANVVSLGKALQL
HGQTNVLGADVEIGDILNSLNQVILPGEGYMFIANDQGNIFTHNNSKLLNQPVSKLGLNNSDIVAAANSGQERTISINGK
DFVVYAKAIDGTKLTTVTVLDNDSLVAPLYDAVWGQIIATTIVVIICVALFNLLCNILFRPLYNVSNALSQIANGSGDLT
QRIKVENRDEVGELAENFNQFVASLQQLIGHIRHQAENLNDQSELSTKRANQSVEELNHQQQEITLVATAVTEMASATQE
IASHAEQTAKVAQDSSISTQNGHSLVVNTKDSINNLSSEVNQASGVISELNQHAQDINTVLSTIRDIAEQTNLLALNAAI
EAARAGEQGRGFAVVADEVRVLSQRTHTSTEEIKSTIETLQCTTQRAVTLMERSSELAIGSVEDADRASQALDEINSAVA
MISDMATQIATAAEEQTHVTNEITQNVTSIKDVTDHLVIGAEESMNQSSELKSQAEDLNSKVATFKLA

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=355, Percent_Identity=31.830985915493, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI2367378, Length=362, Percent_Identity=30.3867403314917, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1788194, Length=368, Percent_Identity=27.9891304347826, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788195, Length=302, Percent_Identity=29.4701986754967, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1789453, Length=362, Percent_Identity=28.1767955801105, Blast_Score=101, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004010
- InterPro:   IPR003122
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR022094 [H]

Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF12332 McpA_N; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 67476; Mature: 67476

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNLSLKNKLAISASAAIILGGVLVEGLSFRDALQRLDVEVAQCLESTSASYNQYVSDW
CCCCCCCCCHHEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LLSKERALTSLSQDAEKSAIVTHLKQVRDSAAFDNVFLAYPDGSQDNANGVVLPPGNDDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEECCCCCCC
RQWGWYTNAIANPSKVFMDNPTVAAATGANVVSLGKALQLHGQTNVLGADVEIGDILNSL
CCCCCHHHCCCCCCCEEECCCCEEEECCCCHHHHHHHHEECCCCCEEECCCHHHHHHHHH
NQVILPGEGYMFIANDQGNIFTHNNSKLLNQPVSKLGLNNSDIVAAANSGQERTISINGK
CCEEECCCCEEEEECCCCCEEECCCCHHHHCCHHHHCCCCCCEEEEECCCCCEEEEECCC
DFVVYAKAIDGTKLTTVTVLDNDSLVAPLYDAVWGQIIATTIVVIICVALFNLLCNILFR
EEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLYNVSNALSQIANGSGDLTQRIKVENRDEVGELAENFNQFVASLQQLIGHIRHQAENLN
HHHHHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DQSELSTKRANQSVEELNHQQQEITLVATAVTEMASATQEIASHAEQTAKVAQDSSISTQ
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
NGHSLVVNTKDSINNLSSEVNQASGVISELNQHAQDINTVLSTIRDIAEQTNLLALNAAI
CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHH
EAARAGEQGRGFAVVADEVRVLSQRTHTSTEEIKSTIETLQCTTQRAVTLMERSSELAIG
HHHHCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
SVEDADRASQALDEINSAVAMISDMATQIATAAEEQTHVTNEITQNVTSIKDVTDHLVIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
AEESMNQSSELKSQAEDLNSKVATFKLA
CHHHCCHHHHHHHHHHHHHCCCEEEECC
>Mature Secondary Structure
MLKNLSLKNKLAISASAAIILGGVLVEGLSFRDALQRLDVEVAQCLESTSASYNQYVSDW
CCCCCCCCCHHEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LLSKERALTSLSQDAEKSAIVTHLKQVRDSAAFDNVFLAYPDGSQDNANGVVLPPGNDDP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCEEEECCCCCCC
RQWGWYTNAIANPSKVFMDNPTVAAATGANVVSLGKALQLHGQTNVLGADVEIGDILNSL
CCCCCHHHCCCCCCCEEECCCCEEEECCCCHHHHHHHHEECCCCCEEECCCHHHHHHHHH
NQVILPGEGYMFIANDQGNIFTHNNSKLLNQPVSKLGLNNSDIVAAANSGQERTISINGK
CCEEECCCCEEEEECCCCCEEECCCCHHHHCCHHHHCCCCCCEEEEECCCCCEEEEECCC
DFVVYAKAIDGTKLTTVTVLDNDSLVAPLYDAVWGQIIATTIVVIICVALFNLLCNILFR
EEEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLYNVSNALSQIANGSGDLTQRIKVENRDEVGELAENFNQFVASLQQLIGHIRHQAENLN
HHHHHHHHHHHHHCCCCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DQSELSTKRANQSVEELNHQQQEITLVATAVTEMASATQEIASHAEQTAKVAQDSSISTQ
CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
NGHSLVVNTKDSINNLSSEVNQASGVISELNQHAQDINTVLSTIRDIAEQTNLLALNAAI
CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHHH
EAARAGEQGRGFAVVADEVRVLSQRTHTSTEEIKSTIETLQCTTQRAVTLMERSSELAIG
HHHHCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
SVEDADRASQALDEINSAVAMISDMATQIATAAEEQTHVTNEITQNVTSIKDVTDHLVIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
AEESMNQSSELKSQAEDLNSKVATFKLA
CHHHCCHHHHHHHHHHHHHCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8188684; 9384377 [H]