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The map label for this gene is yfaD [C]

Identifier: 156975959

GI number: 156975959

Start: 4288

End: 5217

Strand: Reverse

Name: yfaD [C]

Synonym: VIBHAR_04729

Alternate gene names: 156975959

Gene position: 5217-4288 (Counterclockwise)

Preceding gene: 156975960

Following gene: 156975957

Centisome position: 0.24

GC content: 43.23

Gene sequence:

>930_bases
ATGAATAGAGTGAAAACCCCAACATCGATACATGACGGATTGTTTAAGTCGTTCTTGACTGTTCCAGAAACCACGAAGGA
CTTTCTTGATGTGCACTTACCAGAGCACATCAAACAGATGTGCAATCTCGATACGCTCCAACTTCAATCCGGTTCATTTT
TGGAAGATGAATTAGTAGCCTATTATTCCGATGTGCTGTATTCAATGGAAACGGACAGTGGAGTAGGGTATGTGTACGCT
TTGGTTGAGCACCAAAGTAGTCCTGATAAACATATGGGCTTTAGATTGATGCGATACGCAATCGCGGCAATGAAACAGCA
TCTAGACGCAGGTAACGAAACATTGCCTTTGGTTGTGCCGTTGCTGTTCTATCATGGGAAAACGAGTCCTTATCCATACA
GTACAAATTGGTTGGATGAATTTGAAAATCCAGAGATAGCTCAAACCCTTTATGCTCAGTCTTTCCCTTTGGTGGATGTC
ACTGTGATACCGGATGATGAAATCATCCGGCATAAACGAGTGGCCTTGTTAGAGCTGGTACAGAAGCATGTGCGGCAAAG
AGATTTGTTGGATTTTACAGACACACTGGTTACACTGTTATTAGAGCGTTTAATAACCAGCAAACAGTTAGATAGTTTAG
TGGAGTATTTGCTTAGAGTAGGGGAAACGTCGAATCTAGAAGATTTGATGCGAACTTTAGCTAGGCAAGTGCCAGAGCAT
GAGGAACGGTTCATGACAGTAGCAGAGCAATTGGAAGCGCGTGGCCGCGAGCAAGGTCTACAGCAAGGTAGACAAGAAGG
CGAACAACAAGGTTGGCAAGAAGCCCAATTGAGCATTGCAAAAAAAATGCTTTCAGCAGGAATTGATATAGCTCTTATCG
CGCAAACAACAGAGCTAACCGAAGATGAGATCTCAAGACTCATCAACTAA

Upstream 100 bases:

>100_bases
CAGCACTAGACAGAGAGATGTTTTCTTTCAGTATCAAAAGTTATCGATGGGTCCACACTAGAATATAATTGATGTATAGT
ATCGAAAGACAAACGTGGTA

Downstream 100 bases:

>100_bases
TGATTTAATTTCATTCCGACATAATGGCGAAGTGTTAATGACATTTCGCCATTTTTTTAACTGTAACTTGTGACGCTGTA
ACTATTTATTTCATGAGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MNRVKTPTSIHDGLFKSFLTVPETTKDFLDVHLPEHIKQMCNLDTLQLQSGSFLEDELVAYYSDVLYSMETDSGVGYVYA
LVEHQSSPDKHMGFRLMRYAIAAMKQHLDAGNETLPLVVPLLFYHGKTSPYPYSTNWLDEFENPEIAQTLYAQSFPLVDV
TVIPDDEIIRHKRVALLELVQKHVRQRDLLDFTDTLVTLLLERLITSKQLDSLVEYLLRVGETSNLEDLMRTLARQVPEH
EERFMTVAEQLEARGREQGLQQGRQEGEQQGWQEAQLSIAKKMLSAGIDIALIAQTTELTEDEISRLIN

Sequences:

>Translated_309_residues
MNRVKTPTSIHDGLFKSFLTVPETTKDFLDVHLPEHIKQMCNLDTLQLQSGSFLEDELVAYYSDVLYSMETDSGVGYVYA
LVEHQSSPDKHMGFRLMRYAIAAMKQHLDAGNETLPLVVPLLFYHGKTSPYPYSTNWLDEFENPEIAQTLYAQSFPLVDV
TVIPDDEIIRHKRVALLELVQKHVRQRDLLDFTDTLVTLLLERLITSKQLDSLVEYLLRVGETSNLEDLMRTLARQVPEH
EERFMTVAEQLEARGREQGLQQGRQEGEQQGWQEAQLSIAKKMLSAGIDIALIAQTTELTEDEISRLIN
>Mature_309_residues
MNRVKTPTSIHDGLFKSFLTVPETTKDFLDVHLPEHIKQMCNLDTLQLQSGSFLEDELVAYYSDVLYSMETDSGVGYVYA
LVEHQSSPDKHMGFRLMRYAIAAMKQHLDAGNETLPLVVPLLFYHGKTSPYPYSTNWLDEFENPEIAQTLYAQSFPLVDV
TVIPDDEIIRHKRVALLELVQKHVRQRDLLDFTDTLVTLLLERLITSKQLDSLVEYLLRVGETSNLEDLMRTLARQVPEH
EERFMTVAEQLEARGREQGLQQGRQEGEQQGWQEAQLSIAKKMLSAGIDIALIAQTTELTEDEISRLIN

Specific function: Unknown

COG id: COG5464

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yadD/yfaD/yhgA/yjiP family [H]

Homologues:

Organism=Escherichia coli, GI1788577, Length=303, Percent_Identity=50.8250825082508, Blast_Score=330, Evalue=7e-92,
Organism=Escherichia coli, GI1788643, Length=301, Percent_Identity=47.1760797342193, Blast_Score=316, Evalue=1e-87,
Organism=Escherichia coli, GI1789816, Length=301, Percent_Identity=49.1694352159468, Blast_Score=310, Evalue=1e-85,
Organism=Escherichia coli, GI1786324, Length=302, Percent_Identity=45.6953642384106, Blast_Score=285, Evalue=2e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010106
- InterPro:   IPR006842 [H]

Pfam domain/function: PF04754 Transposase_31 [H]

EC number: NA

Molecular weight: Translated: 35366; Mature: 35366

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVKTPTSIHDGLFKSFLTVPETTKDFLDVHLPEHIKQMCNLDTLQLQSGSFLEDELVA
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCEEECCCCCHHHHHHH
YYSDVLYSMETDSGVGYVYALVEHQSSPDKHMGFRLMRYAIAAMKQHLDAGNETLPLVVP
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LLFYHGKTSPYPYSTNWLDEFENPEIAQTLYAQSFPLVDVTVIPDDEIIRHKRVALLELV
HHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH
QKHVRQRDLLDFTDTLVTLLLERLITSKQLDSLVEYLLRVGETSNLEDLMRTLARQVPEH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHH
EERFMTVAEQLEARGREQGLQQGRQEGEQQGWQEAQLSIAKKMLSAGIDIALIAQTTELT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCC
EDEISRLIN
HHHHHHHCC
>Mature Secondary Structure
MNRVKTPTSIHDGLFKSFLTVPETTKDFLDVHLPEHIKQMCNLDTLQLQSGSFLEDELVA
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCEEECCCCCHHHHHHH
YYSDVLYSMETDSGVGYVYALVEHQSSPDKHMGFRLMRYAIAAMKQHLDAGNETLPLVVP
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
LLFYHGKTSPYPYSTNWLDEFENPEIAQTLYAQSFPLVDVTVIPDDEIIRHKRVALLELV
HHHHCCCCCCCCCCCCHHHHCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHH
QKHVRQRDLLDFTDTLVTLLLERLITSKQLDSLVEYLLRVGETSNLEDLMRTLARQVPEH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHH
EERFMTVAEQLEARGREQGLQQGRQEGEQQGWQEAQLSIAKKMLSAGIDIALIAQTTELT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCC
EDEISRLIN
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]