Click here to switch to the map view.

The map label for this gene is yvrC [H]

Identifier: 156937991

GI number: 156937991

Start: 1074234

End: 1075154

Strand: Reverse

Name: yvrC [H]

Synonym: Igni_1204

Alternate gene names: 156937991

Gene position: 1075154-1074234 (Counterclockwise)

Preceding gene: 156937992

Following gene: 156937990

Centisome position: 82.86

GC content: 59.28

Gene sequence:

>921_bases
TTGAATAAGAAGGCTATTACGTTAATATTGTTGTTCTTAGTTCCTCTGTGGTCTTTAACCTTCGTAGACAGAATGGGGTA
CAGAGTAGACGTCAACCCTTACCCGCCTAAGAGGGTAGTTGCCCTCACCCCGGCCTTGAGCGAGGCCGTCTGCTTGCTGA
ACTGTTCCAAGCTCGTAGGGACGGTGGAGCCCGTCACCTACCCCCCGGAGCTGGAGGAGCTGGTGAAGGAGGGCAAGGTC
AAGGTAGTGGGCTACTTCTGGAACCCCAACGTAGAGGCAATAGCCTCGCTCTCCCCGGACTTGGTCCTCGCCGACGCGGG
AAGCGACTTGAGGATGAGGGATCACCTCATAAGCGCCGGGCTAAAGGTGTTCTTCGTCAAGGGAGGGGTGTGCGAGAGCG
TTAAGTGCGTGGAAGAGGACCTAGTGGCTGTGGGGAAGGCGCTGGGCGAAGAGGAGGAAGCCCGGAAGGTGGCTGGGTGG
ATAGAGGGCAACTTGACTCTGGCCCAAGGGGTAGCTAAGTTAATGCCCGTCGTGAAGTACGTCGCGCTGTTCTACCCCTA
CAAGTGGGGGATATACGCCGTGGGCGAGAACAACTTTATCAGCAGCGTGGCCGACTCGCTGAACGCTGTCAACTTGATCA
AGAACAAGGGGTGGCCGAGGGTGAGCGAGGAGAAGTTGGCGACGTTGAGGCCGGACGTGGTAATAGTCCTCACCAGCGGG
CGCCCCGACTTGGGGGACGCTGTTAACTCCACCCTCAAACTGGTCCCGGAGGTCAAGTGGGTGTGCGTGATATACGCGGA
GGCGGCGGACGTGGTGGAGAGGCCGGGGCCGAGGCTAAGCGAGGCCCCGCTAATACTGTTGAACGCGCTCCACCTCCACC
TCGCGGACTCCCGAGGGGTCTACTGCTACTCTCCGCGCTAG

Upstream 100 bases:

>100_bases
AGGAGCTTAAGGATACTCAACAGGTTGTTGAACGTGATAATCGACGAGGCCACCAGCGGCAGCGTTTAAAGGGGAGGGGC
GAAGCCCCACGGGGAAGAAC

Downstream 100 bases:

>100_bases
CCACCCTCGCCTCCCTCCTTTACGGCCCGGCGGGCTTCACCTTGGAGCTTCCAATCCTAAGGATAAGGGCGGAGAGGGTC
TGGGCTGACGCCCTGGCGGC

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MNKKAITLILLFLVPLWSLTFVDRMGYRVDVNPYPPKRVVALTPALSEAVCLLNCSKLVGTVEPVTYPPELEELVKEGKV
KVVGYFWNPNVEAIASLSPDLVLADAGSDLRMRDHLISAGLKVFFVKGGVCESVKCVEEDLVAVGKALGEEEEARKVAGW
IEGNLTLAQGVAKLMPVVKYVALFYPYKWGIYAVGENNFISSVADSLNAVNLIKNKGWPRVSEEKLATLRPDVVIVLTSG
RPDLGDAVNSTLKLVPEVKWVCVIYAEAADVVERPGPRLSEAPLILLNALHLHLADSRGVYCYSPR

Sequences:

>Translated_306_residues
MNKKAITLILLFLVPLWSLTFVDRMGYRVDVNPYPPKRVVALTPALSEAVCLLNCSKLVGTVEPVTYPPELEELVKEGKV
KVVGYFWNPNVEAIASLSPDLVLADAGSDLRMRDHLISAGLKVFFVKGGVCESVKCVEEDLVAVGKALGEEEEARKVAGW
IEGNLTLAQGVAKLMPVVKYVALFYPYKWGIYAVGENNFISSVADSLNAVNLIKNKGWPRVSEEKLATLRPDVVIVLTSG
RPDLGDAVNSTLKLVPEVKWVCVIYAEAADVVERPGPRLSEAPLILLNALHLHLADSRGVYCYSPR
>Mature_306_residues
MNKKAITLILLFLVPLWSLTFVDRMGYRVDVNPYPPKRVVALTPALSEAVCLLNCSKLVGTVEPVTYPPELEELVKEGKV
KVVGYFWNPNVEAIASLSPDLVLADAGSDLRMRDHLISAGLKVFFVKGGVCESVKCVEEDLVAVGKALGEEEEARKVAGW
IEGNLTLAQGVAKLMPVVKYVALFYPYKWGIYAVGENNFISSVADSLNAVNLIKNKGWPRVSEEKLATLRPDVVIVLTSG
RPDLGDAVNSTLKLVPEVKWVCVIYAEAADVVERPGPRLSEAPLILLNALHLHLADSRGVYCYSPR

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 33484; Mature: 33484

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKAITLILLFLVPLWSLTFVDRMGYRVDVNPYPPKRVVALTPALSEAVCLLNCSKLVG
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHC
TVEPVTYPPELEELVKEGKVKVVGYFWNPNVEAIASLSPDLVLADAGSDLRMRDHLISAG
CCCCCCCCHHHHHHHHCCCEEEEEEEECCCHHHHHCCCCCEEEEECCCCCHHHHHHHHCC
LKVFFVKGGVCESVKCVEEDLVAVGKALGEEEEARKVAGWIEGNLTLAQGVAKLMPVVKY
CEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VALFYPYKWGIYAVGENNFISSVADSLNAVNLIKNKGWPRVSEEKLATLRPDVVIVLTSG
HHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEECC
RPDLGDAVNSTLKLVPEVKWVCVIYAEAADVVERPGPRLSEAPLILLNALHLHLADSRGV
CCCHHHHHHHHHHHCCCCEEEEEEEECHHHHHHCCCCCCCCCCCCEEEHHHHEEECCCCE
YCYSPR
EEECCC
>Mature Secondary Structure
MNKKAITLILLFLVPLWSLTFVDRMGYRVDVNPYPPKRVVALTPALSEAVCLLNCSKLVG
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHC
TVEPVTYPPELEELVKEGKVKVVGYFWNPNVEAIASLSPDLVLADAGSDLRMRDHLISAG
CCCCCCCCHHHHHHHHCCCEEEEEEEECCCHHHHHCCCCCEEEEECCCCCHHHHHHHHCC
LKVFFVKGGVCESVKCVEEDLVAVGKALGEEEEARKVAGWIEGNLTLAQGVAKLMPVVKY
CEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VALFYPYKWGIYAVGENNFISSVADSLNAVNLIKNKGWPRVSEEKLATLRPDVVIVLTSG
HHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCEEEEEECC
RPDLGDAVNSTLKLVPEVKWVCVIYAEAADVVERPGPRLSEAPLILLNALHLHLADSRGV
CCCHHHHHHHHHHHCCCCEEEEEEEECHHHHHHCCCCCCCCCCCCEEEHHHHEEECCCCE
YCYSPR
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]