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The map label for this gene is rpl4lp [H]

Identifier: 156937756

GI number: 156937756

Start: 858868

End: 859683

Strand: Direct

Name: rpl4lp [H]

Synonym: Igni_0965

Alternate gene names: 156937756

Gene position: 858868-859683 (Clockwise)

Preceding gene: 156937755

Following gene: 156937757

Centisome position: 66.19

GC content: 59.31

Gene sequence:

>816_bases
ATGTACTCCAGCTTGTGGCTCCACGCCAGGGTGTTCGGGTATAACGACTTGAAGAGGCACGTGTGGGACTTGAACGGCAA
CCCGGTTGAGGAAATAGAGCTCCCGCCGGTCTTCTCCCTGCCAGTCAGGAAGGACCTAATAAGGAGGGCCTTCCTAAGTG
CCTTCACCGCGAGGCTCCAGCCGAAGGGGAGGGACCCCATGGCGGGCAAGCGCACCACCGCCGAGAGCTTGGGGCCCGGA
CACGGCCTCGCGAGGGTGCCGAGGATTAAGGGCACCAGCAGGGCGGCGTTCGTTAACTCCGCGCGTGGCGGACACTTGGC
CTTCCCGCCTAGGCCCGACAAGAAGCTTCACGAGGAGATAAACAAGAAGGAGAGGTTGATCGCGATAGCGAGCGCCCTCG
CGGCGACCTCGAGGAGGGAGCTAGTGGAGGCCAGGGGACACGCGATAAGCTCCGTTAAAGAAGTTCCACTAATAGTAGTG
GACGACATCGAAAACATAGAGAAGGCGAAGGACTTGAGGGAGGCATTCGTCAAGTTGGGCGTCATAGACGACGTTGAGAG
AGCCTCTGAATGGAGGCAGAGGAGCACCAAGGGGAAGATGAGGGGGAGGAGGTACAAGAAGAGGGTGGGCCCCTTGATAA
TAGTGAGCACGGAAGAGGCGCCGGTTAGGAGGGCTGCGAGCGCCTTCCCGGGAACTGACGTGGTCGCCGTGAACTTGTTG
AGCGTAAAGCACCTAGCGCCCGGAGGGGTCCCGGGTAGGTTAACAATCATAAGCAAAAAGGCCCTCGAGGAGATAGGCAA
GAGGTTGACACTATGA

Upstream 100 bases:

>100_bases
GCCTCCCGGTCAGGCCCCCGGCTTGGGTACCTCCCGGACCCCCCAAGATCACTTACATCAGCTTAAGCTCCAAGCAAGGT
AACTAAAGGGGTGGTTGGTG

Downstream 100 bases:

>100_bases
GGGCTCCGGAGGACATCATAATAAGGCCGCTCCACACGGAAAAGGCGCTAATGTTGATGGAAAAGTACAACACTTTGACG
TTCATAGTAAGGAGGGACGC

Product: 50S ribosomal protein L4P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MYSSLWLHARVFGYNDLKRHVWDLNGNPVEEIELPPVFSLPVRKDLIRRAFLSAFTARLQPKGRDPMAGKRTTAESLGPG
HGLARVPRIKGTSRAAFVNSARGGHLAFPPRPDKKLHEEINKKERLIAIASALAATSRRELVEARGHAISSVKEVPLIVV
DDIENIEKAKDLREAFVKLGVIDDVERASEWRQRSTKGKMRGRRYKKRVGPLIIVSTEEAPVRRAASAFPGTDVVAVNLL
SVKHLAPGGVPGRLTIISKKALEEIGKRLTL

Sequences:

>Translated_271_residues
MYSSLWLHARVFGYNDLKRHVWDLNGNPVEEIELPPVFSLPVRKDLIRRAFLSAFTARLQPKGRDPMAGKRTTAESLGPG
HGLARVPRIKGTSRAAFVNSARGGHLAFPPRPDKKLHEEINKKERLIAIASALAATSRRELVEARGHAISSVKEVPLIVV
DDIENIEKAKDLREAFVKLGVIDDVERASEWRQRSTKGKMRGRRYKKRVGPLIIVSTEEAPVRRAASAFPGTDVVAVNLL
SVKHLAPGGVPGRLTIISKKALEEIGKRLTL
>Mature_271_residues
MYSSLWLHARVFGYNDLKRHVWDLNGNPVEEIELPPVFSLPVRKDLIRRAFLSAFTARLQPKGRDPMAGKRTTAESLGPG
HGLARVPRIKGTSRAAFVNSARGGHLAFPPRPDKKLHEEINKKERLIAIASALAATSRRELVEARGHAISSVKEVPLIVV
DDIENIEKAKDLREAFVKLGVIDDVERASEWRQRSTKGKMRGRRYKKRVGPLIIVSTEEAPVRRAASAFPGTDVVAVNLL
SVKHLAPGGVPGRLTIISKKALEEIGKRLTL

Specific function: Forms part of the polypeptide exit tunnel [H]

COG id: COG0088

COG function: function code J; Ribosomal protein L4

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L4P family [H]

Homologues:

Organism=Homo sapiens, GI16579885, Length=242, Percent_Identity=34.7107438016529, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17508669, Length=242, Percent_Identity=35.9504132231405, Blast_Score=150, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6320215, Length=242, Percent_Identity=34.7107438016529, Blast_Score=123, Evalue=3e-29,
Organism=Saccharomyces cerevisiae, GI6319505, Length=242, Percent_Identity=34.7107438016529, Blast_Score=123, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24650747, Length=243, Percent_Identity=32.5102880658436, Blast_Score=130, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002136
- InterPro:   IPR019970 [H]

Pfam domain/function: PF00573 Ribosomal_L4 [H]

EC number: NA

Molecular weight: Translated: 30012; Mature: 30012

Theoretical pI: Translated: 11.19; Mature: 11.19

Prosite motif: PS00939 RIBOSOMAL_L1E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSSLWLHARVFGYNDLKRHVWDLNGNPVEEIELPPVFSLPVRKDLIRRAFLSAFTARLQ
CCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PKGRDPMAGKRTTAESLGPGHGLARVPRIKGTSRAAFVNSARGGHLAFPPRPDKKLHEEI
CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHH
NKKERLIAIASALAATSRRELVEARGHAISSVKEVPLIVVDDIENIEKAKDLREAFVKLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHC
VIDDVERASEWRQRSTKGKMRGRRYKKRVGPLIIVSTEEAPVRRAASAFPGTDVVAVNLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCCCCEEEHHH
SVKHLAPGGVPGRLTIISKKALEEIGKRLTL
HHHHCCCCCCCCEEEEECHHHHHHHHHHCCC
>Mature Secondary Structure
MYSSLWLHARVFGYNDLKRHVWDLNGNPVEEIELPPVFSLPVRKDLIRRAFLSAFTARLQ
CCCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
PKGRDPMAGKRTTAESLGPGHGLARVPRIKGTSRAAFVNSARGGHLAFPPRPDKKLHEEI
CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHH
NKKERLIAIASALAATSRRELVEARGHAISSVKEVPLIVVDDIENIEKAKDLREAFVKLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHC
VIDDVERASEWRQRSTKGKMRGRRYKKRVGPLIIVSTEEAPVRRAASAFPGTDVVAVNLL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCCCCEEEHHH
SVKHLAPGGVPGRLTIISKKALEEIGKRLTL
HHHHCCCCCCCCEEEEECHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA