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The map label for this gene is priA [H]

Identifier: 156937648

GI number: 156937648

Start: 758160

End: 759215

Strand: Direct

Name: priA [H]

Synonym: Igni_0855

Alternate gene names: 156937648

Gene position: 758160-759215 (Clockwise)

Preceding gene: 156937647

Following gene: 156937649

Centisome position: 58.43

GC content: 57.39

Gene sequence:

>1056_bases
GTGTCGAATAAGCTGCACTTAATGATACTCGACTATTACAAGGAAGCTAGGTTTGAGGTGCCGGAGGACTTAAGCCAGAG
GGAGGTGGCGGTCCAAACAGTCGACGGCGGGATGGTAAGACACATGAGCGCTTCGGACGTGGAGGAGCTGAGGTCTATAG
TCCTCAAGAAGCGTGGGCTGGACGTTTACGTTTCCACCGCTAGCTACCGGGACCCGGCGGCCCCCAGCATGGAAGCTAAG
GGGTGGCTGAGGGCGGACCTACAGTTCGACATAGACGTGGACCACGCGCCCGGGTGCGGTCCGGCTTACAAGGTCTGCGG
AGAAACGGTCGTGCCCTCCTCGGCGGACTGCGCCGGCGACCCCCTCCCTCTCTTGCCCAAGGAGTGTTTATACTTCGGCT
TCGAGCGGGCGACGAAGCTTATCGACGTCCTCGAGAAGTACTTCGGGGTAGAGAGGGAAAAGGTGGAGCTACACTTCTCG
GGGAACAGAGGTTTCCACGTAGTCGCGCGCGACACCCAGTACGACGCCGCGGACCAAACCTTAAGGAGGGAGGTAGTAGA
CTTTATAGTGGGCGACCTCTTAATTAAAGAAAAGTTCTGTCTAAAGGAAAATTGCTTCGTTCCCAAGCCGGACGAGCCCG
GGTGGAGGGGGAGGTTGGGCGAGGCCCTCTCGAAGCTCCTCCCAGAACGCGTTAGGCTCTGGGGGGAGGTGGACGACCCA
GAGGCCCTCTTCGAACGCGCCCTCTCTTCGGCCAAAATAGACGTTGATAAACAAGTAACCGTCGATACGAGTAGGTTGCT
AAGGGTTCTGGGAAGCGTCAACCGCAAGTCGGCGTTGGTTGTAAAGAGAGTAGATAAATTTGTGTGGGACTTCAGCTTAA
GCCCGTTTGTGAGTTACGTGACCTTGGTGAGGTCCAGATACAATTTCAAGCTGGACGTCTTGGGTAAGCACGTATCGATG
AAGAAGGGGGAGGTAGGGGAGCTCCCGGGGCCCGCGGGGGCCTACCTGGCGGCCAAGGGGTTGGTTGAAATACTTCGCTT
CGACAGGGCCCCTTAG

Upstream 100 bases:

>100_bases
GTGGCGGACAAGGTCGCGCTGGAGATAGGCAACGACATGCCCCTCCGCGCAACCTTCGAGATAGGAGAGGGGGGCAAGCT
TGTCTACTTACTCGCGCCGC

Downstream 100 bases:

>100_bases
CGAGGTGGAGCTGCCGTTGCAAGTTTACTACGCCTTGAAGCACCCGGACGGCACTAAGTCGTTCGATTACTGGCTGCTGA
AGCAAGCCCACTTAGCCAGG

Product: DNA primase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MSNKLHLMILDYYKEARFEVPEDLSQREVAVQTVDGGMVRHMSASDVEELRSIVLKKRGLDVYVSTASYRDPAAPSMEAK
GWLRADLQFDIDVDHAPGCGPAYKVCGETVVPSSADCAGDPLPLLPKECLYFGFERATKLIDVLEKYFGVEREKVELHFS
GNRGFHVVARDTQYDAADQTLRREVVDFIVGDLLIKEKFCLKENCFVPKPDEPGWRGRLGEALSKLLPERVRLWGEVDDP
EALFERALSSAKIDVDKQVTVDTSRLLRVLGSVNRKSALVVKRVDKFVWDFSLSPFVSYVTLVRSRYNFKLDVLGKHVSM
KKGEVGELPGPAGAYLAAKGLVEILRFDRAP

Sequences:

>Translated_351_residues
MSNKLHLMILDYYKEARFEVPEDLSQREVAVQTVDGGMVRHMSASDVEELRSIVLKKRGLDVYVSTASYRDPAAPSMEAK
GWLRADLQFDIDVDHAPGCGPAYKVCGETVVPSSADCAGDPLPLLPKECLYFGFERATKLIDVLEKYFGVEREKVELHFS
GNRGFHVVARDTQYDAADQTLRREVVDFIVGDLLIKEKFCLKENCFVPKPDEPGWRGRLGEALSKLLPERVRLWGEVDDP
EALFERALSSAKIDVDKQVTVDTSRLLRVLGSVNRKSALVVKRVDKFVWDFSLSPFVSYVTLVRSRYNFKLDVLGKHVSM
KKGEVGELPGPAGAYLAAKGLVEILRFDRAP
>Mature_350_residues
SNKLHLMILDYYKEARFEVPEDLSQREVAVQTVDGGMVRHMSASDVEELRSIVLKKRGLDVYVSTASYRDPAAPSMEAKG
WLRADLQFDIDVDHAPGCGPAYKVCGETVVPSSADCAGDPLPLLPKECLYFGFERATKLIDVLEKYFGVEREKVELHFSG
NRGFHVVARDTQYDAADQTLRREVVDFIVGDLLIKEKFCLKENCFVPKPDEPGWRGRLGEALSKLLPERVRLWGEVDDPE
ALFERALSSAKIDVDKQVTVDTSRLLRVLGSVNRKSALVVKRVDKFVWDFSLSPFVSYVTLVRSRYNFKLDVLGKHVSMK
KGEVGELPGPAGAYLAAKGLVEILRFDRAP

Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]

COG id: COG1467

COG function: function code L; Eukaryotic-type DNA primase, catalytic (small) subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic-type primase small subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002755 [H]

Pfam domain/function: PF01896 DNA_primase_S [H]

EC number: 2.7.7.-

Molecular weight: Translated: 39401; Mature: 39270

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKLHLMILDYYKEARFEVPEDLSQREVAVQTVDGGMVRHMSASDVEELRSIVLKKRGL
CCCCEEEEEEEHHHHHCCCCCCCHHHHHEEEEECCCCCEECCCHHHHHHHHHHHHHHCCC
DVYVSTASYRDPAAPSMEAKGWLRADLQFDIDVDHAPGCGPAYKVCGETVVPSSADCAGD
EEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCC
PLPLLPKECLYFGFERATKLIDVLEKYFGVEREKVELHFSGNRGFHVVARDTQYDAADQT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCHHHHH
LRREVVDFIVGDLLIKEKFCLKENCFVPKPDEPGWRGRLGEALSKLLPERVRLWGEVDDP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCH
EALFERALSSAKIDVDKQVTVDTSRLLRVLGSVNRKSALVVKRVDKFVWDFSLSPFVSYV
HHHHHHHHHHCCCCCCCEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
TLVRSRYNFKLDVLGKHVSMKKGEVGELPGPAGAYLAAKGLVEILRFDRAP
HHHHHHCCEEEEECCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SNKLHLMILDYYKEARFEVPEDLSQREVAVQTVDGGMVRHMSASDVEELRSIVLKKRGL
CCCEEEEEEEHHHHHCCCCCCCHHHHHEEEEECCCCCEECCCHHHHHHHHHHHHHHCCC
DVYVSTASYRDPAAPSMEAKGWLRADLQFDIDVDHAPGCGPAYKVCGETVVPSSADCAGD
EEEEEECCCCCCCCCCCCCCCEEEECEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCC
PLPLLPKECLYFGFERATKLIDVLEKYFGVEREKVELHFSGNRGFHVVARDTQYDAADQT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEEEEECCCCCHHHHH
LRREVVDFIVGDLLIKEKFCLKENCFVPKPDEPGWRGRLGEALSKLLPERVRLWGEVDDP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCH
EALFERALSSAKIDVDKQVTVDTSRLLRVLGSVNRKSALVVKRVDKFVWDFSLSPFVSYV
HHHHHHHHHHCCCCCCCEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
TLVRSRYNFKLDVLGKHVSMKKGEVGELPGPAGAYLAAKGLVEILRFDRAP
HHHHHHCCEEEEECCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA